Wall clock time and date at job start Tue Mar 31 2020 02:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47539 * 2 1 4 4 C 1.52994 * 109.46722 * 120.00661 * 2 1 3 5 5 C 1.53006 * 109.47207 * 173.80604 * 4 2 1 6 6 H 1.08999 * 109.29580 * 54.97866 * 5 4 2 7 7 C 1.52915 * 109.30213 * 174.35944 * 5 4 2 8 8 C 1.53345 * 108.67375 * 171.06375 * 7 5 4 9 9 H 1.09005 * 109.70500 * 52.21862 * 8 7 5 10 10 C 1.50699 * 109.67873 * 172.73860 * 8 7 5 11 11 O 1.21295 * 119.99277 * 5.48168 * 10 8 7 12 12 N 1.34772 * 120.00326 * 185.48985 * 10 8 7 13 13 C 1.46499 * 119.99945 * 183.61634 * 12 10 8 14 14 C 1.37101 * 120.00125 * 3.61338 * 12 10 8 15 15 H 1.07999 * 119.99370 * 9.70785 * 14 12 10 16 16 C 1.38941 * 120.00106 * 189.70538 * 14 12 10 17 17 N 1.31414 * 120.00179 * 21.92048 * 16 14 12 18 18 Si 1.86802 * 119.99984 * 201.91958 * 16 14 12 19 19 H 1.48496 * 109.47037 * 94.99367 * 18 16 14 20 20 H 1.48506 * 109.46805 * 214.99091 * 18 16 14 21 21 H 1.48495 * 109.46891 * 334.98941 * 18 16 14 22 22 C 1.53073 * 108.42682 * 292.47368 * 8 7 5 23 23 C 1.50178 * 109.89367 * 48.89492 * 22 8 7 24 24 O 1.21280 * 118.24898 * 162.44048 * 23 22 8 25 25 N 1.33356 * 123.50753 * 342.42172 * 23 22 8 26 26 H 1.09000 * 109.46998 * 304.67232 * 1 2 3 27 27 H 1.09000 * 109.47084 * 64.66524 * 1 2 3 28 28 H 1.08998 * 109.47809 * 184.67125 * 1 2 3 29 29 H 1.09000 * 109.46379 * 240.00129 * 2 1 3 30 30 H 1.08999 * 109.47028 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47080 * 300.00487 * 3 2 1 32 32 H 1.09004 * 109.46606 * 60.00162 * 3 2 1 33 33 H 1.09005 * 109.46878 * 293.79930 * 4 2 1 34 34 H 1.09002 * 109.47970 * 53.80529 * 4 2 1 35 35 H 1.09001 * 109.60594 * 290.81854 * 7 5 4 36 36 H 1.09005 * 109.60133 * 51.31149 * 7 5 4 37 37 H 1.08996 * 109.47203 * 94.76974 * 13 12 10 38 38 H 1.09001 * 109.47103 * 214.77065 * 13 12 10 39 39 H 1.09004 * 109.47145 * 334.76020 * 13 12 10 40 40 H 0.96999 * 120.00211 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.39561 * 288.76991 * 22 8 7 42 42 H 1.08996 * 109.33470 * 168.98337 * 22 8 7 43 43 H 0.97001 * 117.94678 * 182.19410 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5620 -0.8576 1.1738 6 1 4.0050 0.1274 1.0272 7 6 4.0818 -1.4510 2.4838 8 6 5.5677 -1.7897 2.3140 9 1 6.1029 -0.9173 1.9388 10 6 6.1475 -2.2090 3.6403 11 8 5.4245 -2.3319 4.6064 12 7 7.4692 -2.4472 3.7529 13 6 8.0208 -2.9310 5.0209 14 6 8.2975 -2.2368 2.6809 15 1 7.9241 -1.7352 1.8004 16 6 9.6173 -2.6688 2.7273 17 7 9.9671 -3.6240 3.5593 18 14 10.8943 -1.8917 1.6072 19 1 11.5962 -0.8047 2.3359 20 1 11.8781 -2.9224 1.1884 21 1 10.2240 -1.3306 0.4068 22 6 5.6903 -2.9398 1.3113 23 6 4.8766 -2.6381 0.0856 24 8 5.1074 -3.2666 -0.9256 25 7 3.9137 -1.7162 0.0497 26 1 -0.3633 0.5846 0.8452 27 1 -0.3633 0.4397 -0.9288 28 1 -0.3634 -1.0242 0.0837 29 1 1.8932 -0.5138 -0.8900 30 1 3.1301 1.4423 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.7700 -0.1475 2.1357 34 1 1.5889 -1.7121 1.3063 35 1 3.9619 -0.7245 3.2875 36 1 3.5249 -2.3576 2.7210 37 1 8.0875 -4.0187 4.9967 38 1 9.0149 -2.5092 5.1692 39 1 7.3704 -2.6250 5.8404 40 1 10.8885 -3.9253 3.5920 41 1 5.3272 -3.8598 1.7695 42 1 6.7361 -3.0635 1.0302 43 1 3.4164 -1.6102 -0.7763 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357607347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:55 Heat of formation + Delta-G solvation = -88.613960 kcal Electronic energy + Delta-G solvation = -23363.307818 eV Core-core repulsion = 20021.798018 eV Total energy + Delta-G solvation = -3341.509799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36687 -38.43860 -37.46090 -35.20326 -34.71399 -32.56878 -31.49706 -30.18527 -27.37962 -26.66682 -26.57729 -24.99464 -23.03694 -22.06330 -20.21019 -19.07903 -18.81916 -17.27400 -16.64641 -16.28166 -15.81672 -15.43564 -14.66741 -14.52414 -14.23922 -14.22545 -14.09698 -13.62873 -13.30715 -12.99553 -12.86944 -12.49955 -12.32768 -12.13454 -11.77520 -11.56606 -11.54008 -11.43608 -11.17860 -10.90160 -10.84255 -10.81280 -10.73072 -10.57399 -10.44083 -10.27479 -10.23817 -9.58489 -9.11894 -8.84471 -8.38226 -7.90116 -6.47639 -3.94649 3.00891 3.07147 3.19172 3.21159 3.52835 3.79282 4.02608 4.42633 4.64692 4.69719 4.76072 4.93397 5.02700 5.06049 5.27357 5.33936 5.42791 5.44451 5.48991 5.57795 5.66803 5.72015 5.73471 5.81797 5.91296 5.99976 6.10118 6.16440 6.23198 6.27627 6.33231 6.58719 6.63602 6.79257 7.02815 7.03967 7.31073 7.33518 7.61374 7.64962 8.28565 8.53444 8.99316 9.45134 9.85431 10.54369 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021346 B = 0.004768 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.422735 B = 5870.687790 C = 6409.915190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.126 4.126 5 C 0.138 3.862 6 H 0.076 0.924 7 C -0.107 4.107 8 C -0.088 4.088 9 H 0.089 0.911 10 C 0.452 3.548 11 O -0.613 6.613 12 N -0.436 5.436 13 C 0.119 3.881 14 C -0.344 4.344 15 H 0.103 0.897 16 C 0.041 3.959 17 N -0.858 5.858 18 Si 0.915 3.085 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.267 1.267 22 C -0.125 4.125 23 C 0.526 3.474 24 O -0.565 6.565 25 N -0.717 5.717 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.270 0.730 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.086 7.867 -4.989 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.209 4.209 4 C -0.164 4.164 5 C 0.033 3.967 6 H 0.094 0.906 7 C -0.145 4.145 8 C -0.110 4.110 9 H 0.107 0.893 10 C 0.240 3.760 11 O -0.501 6.501 12 N -0.152 5.152 13 C -0.024 4.024 14 C -0.471 4.471 15 H 0.120 0.880 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.742 3.258 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.192 1.192 22 C -0.165 4.165 23 C 0.314 3.686 24 O -0.445 6.445 25 N -0.370 5.370 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.141 0.859 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -11.943 7.319 -4.742 14.788 hybrid contribution 0.690 0.367 -0.858 1.161 sum -11.253 7.686 -5.600 14.733 Atomic orbital electron populations 1.21831 0.95105 1.01790 1.01653 1.21142 0.95871 0.96513 0.98318 1.21923 1.01481 0.95719 1.01735 1.22056 0.94409 1.01456 0.98493 1.21121 0.94889 0.93835 0.86864 0.90636 1.21712 0.95125 1.02471 0.95204 1.21051 0.95752 0.98933 0.95220 0.89270 1.19720 0.82295 0.84602 0.89391 1.90521 1.59498 1.60243 1.39873 1.43666 1.05094 1.55156 1.11326 1.21355 0.97474 0.99354 0.84187 1.19680 0.92162 1.38091 0.97177 0.87990 1.25218 0.98567 0.94898 0.97851 1.70140 1.19089 1.23011 1.37262 0.86088 0.80515 0.79103 0.80131 1.20252 1.20807 1.19172 1.21674 1.02913 0.99616 0.92261 1.20429 0.79474 0.78254 0.90458 1.90712 1.68472 1.50040 1.35240 1.45713 1.37181 1.38185 1.15953 0.92596 0.92847 0.92670 0.91426 0.92187 0.92871 0.92472 0.90178 0.91066 0.89470 0.90720 0.92966 0.91322 0.94457 0.91921 0.88537 0.85888 0.77291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 2 C -0.10 -0.83 2.85 -90.62 -0.26 -1.09 16 3 C -0.15 -1.21 8.97 37.16 0.33 -0.87 16 4 C -0.13 -1.21 4.31 -26.73 -0.12 -1.32 16 5 C 0.14 1.64 2.96 -68.37 -0.20 1.44 16 6 H 0.08 0.85 6.38 -51.93 -0.33 0.52 16 7 C -0.11 -1.62 3.94 -26.60 -0.10 -1.72 16 8 C -0.09 -1.62 1.74 -91.56 -0.16 -1.78 16 9 H 0.09 1.60 7.29 -51.93 -0.38 1.22 16 10 C 0.45 10.38 6.94 -10.99 -0.08 10.30 16 11 O -0.61 -15.39 15.46 5.54 0.09 -15.31 16 12 N -0.44 -10.69 3.03 -122.20 -0.37 -11.06 16 13 C 0.12 2.90 8.81 59.85 0.53 3.43 16 14 C -0.34 -8.37 7.99 -14.93 -0.12 -8.49 16 15 H 0.10 2.35 5.43 -52.49 -0.29 2.06 16 16 C 0.04 1.00 4.98 -17.47 -0.09 0.92 16 17 N -0.86 -21.91 10.52 55.50 0.58 -21.32 16 18 Si 0.92 19.17 29.61 -169.99 -5.03 14.14 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 C -0.12 -2.33 4.98 -28.10 -0.14 -2.47 16 23 C 0.53 9.26 7.71 -11.87 -0.09 9.17 16 24 O -0.57 -11.88 17.78 5.56 0.10 -11.78 16 25 N -0.72 -9.81 5.12 -54.85 -0.28 -10.09 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.58 6.46 -51.93 -0.34 0.25 16 30 H 0.06 0.51 6.50 -51.93 -0.34 0.17 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.32 7.99 -51.93 -0.41 0.90 16 36 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 37 H 0.05 1.31 7.71 -51.93 -0.40 0.91 16 38 H 0.07 1.68 6.64 -51.93 -0.34 1.34 16 39 H 0.04 0.87 7.24 -51.93 -0.38 0.49 16 40 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 41 H 0.10 1.85 8.09 -51.93 -0.42 1.43 16 42 H 0.12 2.54 6.06 -51.93 -0.31 2.23 16 43 H 0.39 4.80 6.92 -40.82 -0.28 4.52 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -29.43 334.35 -6.76 -36.19 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.74 Total: 7.43 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -0.15 Total: 6.76 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.07 Total: -42.48 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: 0.18 Total: -27.09 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.43 -6.76 -36.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357607347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.420 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds