Wall clock time and date at job start Tue Mar 31 2020 02:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46949 * 2 1 4 4 C 1.53005 * 109.47054 * 120.00202 * 2 1 3 5 5 C 1.52996 * 109.46691 * 175.00069 * 4 2 1 6 6 H 1.09001 * 109.13338 * 54.48244 * 5 4 2 7 7 C 1.53108 * 109.20492 * 174.14815 * 5 4 2 8 8 C 1.53334 * 108.53004 * 171.30222 * 7 5 4 9 9 H 1.09002 * 109.70289 * 172.55572 * 8 7 5 10 10 C 1.50697 * 109.67321 * 52.04435 * 8 7 5 11 11 O 1.21297 * 120.00192 * 267.57864 * 10 8 7 12 12 N 1.34779 * 120.00127 * 87.58571 * 10 8 7 13 13 C 1.46503 * 119.99831 * 359.97438 * 12 10 8 14 14 C 1.37103 * 120.00107 * 180.02562 * 12 10 8 15 15 H 1.08000 * 119.99608 * 22.25382 * 14 12 10 16 16 C 1.38947 * 120.00007 * 202.26021 * 14 12 10 17 17 N 1.31414 * 119.99897 * 15.19260 * 16 14 12 18 18 Si 1.86793 * 120.00196 * 195.19287 * 16 14 12 19 19 H 1.48497 * 109.47232 * 59.99556 * 18 16 14 20 20 H 1.48497 * 109.47411 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47141 * 300.00007 * 18 16 14 22 22 C 1.53068 * 108.42657 * 292.30776 * 8 7 5 23 23 C 1.50175 * 109.88977 * 48.90327 * 22 8 7 24 24 O 1.21284 * 118.24892 * 162.43773 * 23 22 8 25 25 N 1.33357 * 123.51020 * 342.41508 * 23 22 8 26 26 H 1.08997 * 109.47020 * 299.99902 * 1 2 3 27 27 H 1.09002 * 109.47168 * 59.99770 * 1 2 3 28 28 H 1.09004 * 109.46966 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47020 * 240.00098 * 2 1 3 30 30 H 1.08993 * 109.47593 * 300.00049 * 3 2 1 31 31 H 1.09011 * 109.47157 * 60.00469 * 3 2 1 32 32 H 1.09003 * 109.47069 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46868 * 55.00314 * 4 2 1 34 34 H 1.09001 * 109.46634 * 294.99804 * 4 2 1 35 35 H 1.09005 * 109.80664 * 51.50907 * 7 5 4 36 36 H 1.09002 * 109.67635 * 291.02454 * 7 5 4 37 37 H 1.08992 * 109.46807 * 89.53191 * 13 12 10 38 38 H 1.09005 * 109.46883 * 209.52952 * 13 12 10 39 39 H 1.09001 * 109.47105 * 329.52606 * 13 12 10 40 40 H 0.96999 * 120.00282 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.40557 * 288.76764 * 22 8 7 42 42 H 1.09006 * 109.33035 * 168.98565 * 22 8 7 43 43 H 0.96993 * 117.94640 * 182.22625 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1879 6 1 3.9890 0.1626 1.0434 7 6 4.0807 -1.4206 2.5034 8 6 5.5749 -1.7271 2.3472 9 1 5.9919 -2.0234 3.3098 10 6 6.2932 -0.5040 1.8382 11 8 6.4533 -0.3469 0.6461 12 7 6.7580 0.4152 2.7075 13 6 6.5643 0.2256 4.1472 14 6 7.4110 1.5282 2.2443 15 1 7.2532 1.8638 1.2300 16 6 8.2759 2.2242 3.0799 17 7 8.7019 1.6704 4.1929 18 14 8.8330 3.9471 2.6212 19 1 7.6493 4.8367 2.5088 20 1 9.7464 4.4677 3.6699 21 1 9.5469 3.9064 1.3196 22 6 5.7317 -2.8720 1.3434 23 6 4.9238 -2.5846 0.1105 24 8 5.1776 -3.2057 -0.8999 25 7 3.9418 -1.6833 0.0672 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1370 35 1 3.5409 -2.3393 2.7332 36 1 3.9371 -0.7009 3.3094 37 1 7.4066 -0.3319 4.5567 38 1 6.4997 1.1976 4.6362 39 1 5.6424 -0.3299 4.3198 40 1 9.3054 2.1564 4.7764 41 1 5.3839 -3.8005 1.7959 42 1 6.7826 -2.9727 1.0722 43 1 3.4502 -1.5862 -0.7632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357607348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:57 Heat of formation + Delta-G solvation = -85.235592 kcal Electronic energy + Delta-G solvation = -23939.203514 eV Core-core repulsion = 20597.840212 eV Total energy + Delta-G solvation = -3341.363302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47162 -38.17700 -37.26381 -35.12330 -34.46757 -32.61593 -31.46754 -30.08775 -27.20178 -26.86592 -26.22791 -24.96686 -23.16097 -22.07598 -20.36018 -19.60430 -18.01386 -16.91965 -16.73747 -15.94956 -15.76824 -15.43513 -14.77188 -14.56191 -14.33353 -14.11769 -13.79012 -13.55397 -13.23925 -13.14352 -12.66807 -12.37053 -12.16030 -12.07663 -11.75344 -11.50611 -11.39305 -11.37403 -11.27597 -11.20275 -10.87175 -10.78312 -10.71410 -10.62586 -10.42878 -10.34583 -10.25812 -9.24343 -9.02789 -8.56294 -8.34455 -7.69718 -6.35674 -3.89550 3.15866 3.22636 3.23138 3.26327 3.73104 3.85119 4.10617 4.56583 4.73590 4.79201 4.84174 4.97889 5.03262 5.16791 5.21207 5.26504 5.45934 5.55782 5.60446 5.64826 5.69958 5.71496 5.82570 5.83952 5.92740 5.94612 6.03616 6.12165 6.14338 6.23579 6.25604 6.31575 6.37610 6.50617 6.78732 7.14084 7.24534 7.54352 7.85527 8.09750 8.45488 8.75386 9.16463 9.39854 9.95900 10.68921 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016444 B = 0.005838 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.295876 B = 4794.630871 C = 5588.029950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.153 4.153 4 C -0.125 4.125 5 C 0.140 3.860 6 H 0.086 0.914 7 C -0.118 4.118 8 C -0.110 4.110 9 H 0.094 0.906 10 C 0.448 3.552 11 O -0.578 6.578 12 N -0.443 5.443 13 C 0.110 3.890 14 C -0.307 4.307 15 H 0.097 0.903 16 C 0.032 3.968 17 N -0.880 5.880 18 Si 0.923 3.077 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.112 4.112 23 C 0.545 3.455 24 O -0.576 6.576 25 N -0.702 5.702 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.028 0.972 40 H 0.268 0.732 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 -3.528 1.595 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.210 4.210 4 C -0.163 4.163 5 C 0.035 3.965 6 H 0.104 0.896 7 C -0.156 4.156 8 C -0.132 4.132 9 H 0.112 0.888 10 C 0.235 3.765 11 O -0.462 6.462 12 N -0.161 5.161 13 C -0.034 4.034 14 C -0.435 4.435 15 H 0.115 0.885 16 C -0.171 4.171 17 N -0.520 5.520 18 Si 0.750 3.250 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.153 4.153 23 C 0.334 3.666 24 O -0.457 6.457 25 N -0.354 5.354 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -13.496 -3.704 0.903 14.024 hybrid contribution 0.299 1.038 -0.095 1.085 sum -13.197 -2.666 0.809 13.488 Atomic orbital electron populations 1.21828 0.95250 1.01469 1.01687 1.21119 0.95578 0.96795 0.98233 1.21930 1.02178 0.95395 1.01542 1.22062 0.94657 1.01004 0.98617 1.21047 0.93948 0.95285 0.86267 0.89625 1.21889 0.94643 1.01950 0.97114 1.21413 0.96082 0.95574 1.00134 0.88789 1.19829 0.85321 0.84316 0.87046 1.90572 1.62282 1.77707 1.15673 1.43558 1.48725 1.18816 1.05005 1.21521 0.97396 1.01886 0.82633 1.19576 1.22251 1.01665 0.99989 0.88491 1.25293 0.95574 1.00078 0.96202 1.69997 1.31907 1.36903 1.13146 0.86044 0.78534 0.82126 0.78298 1.19964 1.20962 1.19821 1.21408 1.02085 0.98233 0.93536 1.19769 0.78835 0.77999 0.90031 1.90675 1.68184 1.51287 1.35557 1.45322 1.35906 1.38658 1.15467 0.92682 0.92818 0.92875 0.91420 0.92921 0.92604 0.91644 0.91411 0.90465 0.90742 0.89645 0.92702 0.91191 0.95311 0.92212 0.88726 0.88117 0.77344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.10 -1.04 2.85 -90.62 -0.26 -1.30 16 3 C -0.15 -1.78 8.95 37.15 0.33 -1.45 16 4 C -0.13 -1.35 4.32 -26.73 -0.12 -1.46 16 5 C 0.14 2.00 2.22 -68.28 -0.15 1.85 16 6 H 0.09 1.50 5.32 -51.93 -0.28 1.22 16 7 C -0.12 -1.59 4.79 -26.50 -0.13 -1.71 16 8 C -0.11 -1.85 2.20 -91.56 -0.20 -2.06 16 9 H 0.09 1.43 6.82 -51.93 -0.35 1.08 16 10 C 0.45 10.14 5.51 -10.99 -0.06 10.08 16 11 O -0.58 -15.26 14.06 5.54 0.08 -15.18 16 12 N -0.44 -10.67 3.02 -122.19 -0.37 -11.04 16 13 C 0.11 2.27 8.12 59.85 0.49 2.75 16 14 C -0.31 -8.28 9.27 -14.93 -0.14 -8.41 16 15 H 0.10 2.77 7.42 -52.49 -0.39 2.38 16 16 C 0.03 0.82 5.01 -17.47 -0.09 0.74 16 17 N -0.88 -22.90 10.84 55.50 0.60 -22.30 16 18 Si 0.92 20.43 29.58 -169.99 -5.03 15.40 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 22 C -0.11 -1.91 5.25 -28.10 -0.15 -2.06 16 23 C 0.55 10.43 6.38 -11.87 -0.08 10.35 16 24 O -0.58 -13.01 17.78 5.55 0.10 -12.91 16 25 N -0.70 -11.45 4.88 -54.76 -0.27 -11.72 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.75 6.51 -51.93 -0.34 0.42 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.06 0.92 6.44 -51.93 -0.33 0.59 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 36 H 0.09 1.08 6.99 -51.93 -0.36 0.71 16 37 H 0.05 1.20 7.68 -51.93 -0.40 0.80 16 38 H 0.07 1.54 6.97 -51.93 -0.36 1.18 16 39 H 0.03 0.47 5.37 -51.93 -0.28 0.19 16 40 H 0.27 6.64 8.31 -40.82 -0.34 6.31 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.10 1.89 8.10 -51.93 -0.42 1.47 16 43 H 0.39 6.02 6.96 -40.82 -0.28 5.73 16 LS Contribution 331.69 15.07 5.00 5.00 Total: -1.00 -32.31 331.69 -6.83 -39.14 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.74 Total: 7.23 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.20 Total: 6.39 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.03 Total: -45.06 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: 0.18 Total: -28.09 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.31 -6.83 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357607348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.100 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds