Wall clock time and date at job start Tue Mar 31 2020 02:05:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52995 * 109.46977 * 2 1
4 4 C 1.52998 * 109.46950 * 240.00462 * 2 1 3
5 5 C 1.50698 * 109.47245 * 59.99972 * 4 2 1
6 6 H 1.08001 * 120.00092 * 359.97438 * 5 4 2
7 7 C 1.37882 * 120.00154 * 180.02562 * 5 4 2
8 8 N 1.31511 * 119.99696 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 119.99906 * 179.97438 * 7 5 4
10 10 H 1.48496 * 109.47329 * 359.97438 * 9 7 5
11 11 H 1.48507 * 109.47077 * 119.99763 * 9 7 5
12 12 H 1.48504 * 109.47058 * 239.99517 * 9 7 5
13 13 C 1.52999 * 109.47258 * 120.00260 * 2 1 3
14 14 N 1.46497 * 109.46992 * 300.00045 * 13 2 1
15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 2
16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13
17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13
18 18 H 1.08992 * 109.67552 * 59.78037 * 17 15 14
19 19 C 1.53346 * 109.67528 * 180.28052 * 17 15 14
20 20 C 1.52923 * 108.67636 * 187.26313 * 19 17 15
21 21 N 1.45742 * 110.48680 * 309.24601 * 20 19 17
22 22 C 1.33357 * 124.10840 * 19.09790 * 21 20 19
23 23 O 1.21284 * 118.24656 * 177.78043 * 22 21 20
24 24 C 1.50170 * 123.50764 * 357.72681 * 22 21 20
25 25 H 1.08998 * 109.46912 * 299.99187 * 1 2 3
26 26 H 1.08994 * 109.47328 * 60.00002 * 1 2 3
27 27 H 1.09007 * 109.46697 * 179.97438 * 1 2 3
28 28 H 1.09003 * 109.47465 * 179.97438 * 3 2 1
29 29 H 1.09001 * 109.47749 * 300.00235 * 3 2 1
30 30 H 1.09003 * 109.46864 * 60.00231 * 3 2 1
31 31 H 1.08995 * 109.47215 * 179.97438 * 4 2 1
32 32 H 1.09001 * 109.47513 * 300.00092 * 4 2 1
33 33 H 0.97008 * 120.00088 * 180.02562 * 8 7 5
34 34 H 1.08995 * 109.46838 * 179.97438 * 13 2 1
35 35 H 1.09001 * 109.46617 * 60.00267 * 13 2 1
36 36 H 0.97000 * 120.00580 * 0.02562 * 14 13 2
37 37 H 1.09007 * 109.59747 * 307.01925 * 19 17 15
38 38 H 1.08999 * 109.60676 * 67.50208 * 19 17 15
39 39 H 1.09001 * 109.29740 * 69.56094 * 20 19 17
40 40 H 1.09004 * 109.29932 * 188.92761 * 20 19 17
41 41 H 0.97004 * 117.94640 * 199.07756 * 21 20 19
42 42 H 1.08996 * 109.42467 * 257.48942 * 24 22 21
43 43 H 1.09004 * 109.39131 * 137.74209 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7211 -1.2493
5 6 1.5377 -0.0107 -2.4797
6 1 0.9164 0.8672 -2.3806
7 6 1.8703 -0.4819 -3.7320
8 7 2.6264 -1.5512 -3.8528
9 14 1.2470 0.3984 -5.2571
10 1 0.4216 1.5648 -4.8529
11 1 2.4017 0.8650 -6.0660
12 1 0.4218 -0.5352 -6.0651
13 6 2.0401 -0.7213 1.2492
14 7 1.5518 -0.0307 2.4454
15 6 1.8770 -0.4916 3.6694
16 8 2.5743 -1.4777 3.7806
17 6 1.3798 0.2223 4.8999
18 1 0.2899 0.2328 4.9029
19 6 1.8926 -0.4940 6.1551
20 6 1.2313 0.1346 7.3823
21 7 1.3736 1.5848 7.3517
22 6 1.6550 2.2855 6.2525
23 8 1.7090 3.4940 6.3404
24 6 1.9097 1.6583 4.9121
25 1 -0.3633 0.5137 0.8901
26 1 -0.3634 0.5138 -0.8899
27 1 -0.3633 -1.0278 -0.0005
28 1 3.1300 1.4426 0.0005
29 1 1.6767 1.9564 -0.8899
30 1 1.6767 1.9562 0.8900
31 1 3.1300 -0.7208 -1.2496
32 1 1.6767 -1.7488 -1.2494
33 1 2.8607 -1.8826 -4.7338
34 1 3.1300 -0.7217 1.2489
35 1 1.6768 -1.7490 1.2490
36 1 0.9938 0.7577 2.3565
37 1 1.6356 -1.5521 6.1029
38 1 2.9745 -0.3811 6.2244
39 1 0.1724 -0.1235 7.3928
40 1 1.7028 -0.2548 8.2847
41 1 1.2559 2.0707 8.1829
42 1 2.9814 1.6505 4.7134
43 1 1.4038 2.2375 4.1395
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000359759647.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:05:26
Heat of formation + Delta-G solvation = -103.566078 kcal
Electronic energy + Delta-G solvation = -22586.094862 eV
Core-core repulsion = 19243.936690 eV
Total energy + Delta-G solvation = -3342.158172 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.87262 -39.47464 -37.33799 -36.41425 -33.87379 -33.27246 -32.04713 -29.96898
-27.26068 -26.65985 -26.54796 -25.16448 -23.54305 -22.52282 -20.33267 -19.52940
-18.44211 -17.68427 -16.89999 -16.57543 -16.32066 -15.68867 -15.40721 -15.15474
-14.61101 -14.44895 -14.20165 -13.83728 -13.73881 -13.30070 -13.12923 -12.80363
-12.22919 -12.18516 -12.08799 -11.99121 -11.43825 -11.39763 -11.18706 -11.05081
-10.85970 -10.67710 -10.45033 -10.42918 -10.26900 -9.91799 -9.70523 -9.45266
-9.19018 -8.94175 -8.81561 -8.38493 -6.02385 -4.03668 2.32858 2.63907
2.93716 3.25678 3.28777 3.37204 3.39629 4.15870 4.29443 4.38451
4.41526 4.43886 4.88798 4.90033 4.94418 5.16619 5.32539 5.33355
5.42807 5.48471 5.57461 5.60778 5.70843 5.81620 6.12583 6.17759
6.23161 6.34479 6.40230 6.49682 6.59792 6.70458 6.95579 7.02586
7.04126 7.08851 7.60535 7.63796 7.72929 7.87826 7.96286 8.29153
8.38455 9.01392 9.59790 11.09088
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.033941 B = 0.003232 C = 0.003057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 824.769573 B = 8661.201725 C = 9158.137874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.073 4.073
3 C -0.128 4.128
4 C 0.036 3.964
5 C -0.511 4.511
6 H 0.060 0.940
7 C 0.056 3.944
8 N -0.894 5.894
9 Si 0.888 3.112
10 H -0.273 1.273
11 H -0.285 1.285
12 H -0.285 1.285
13 C 0.127 3.873
14 N -0.718 5.718
15 C 0.513 3.487
16 O -0.541 6.541
17 C -0.113 4.113
18 H 0.104 0.896
19 C -0.117 4.117
20 C 0.109 3.891
21 N -0.721 5.721
22 C 0.525 3.475
23 O -0.555 6.555
24 C -0.127 4.127
25 H 0.028 0.972
26 H 0.067 0.933
27 H 0.047 0.953
28 H 0.048 0.952
29 H 0.067 0.933
30 H 0.029 0.971
31 H 0.018 0.982
32 H 0.018 0.982
33 H 0.259 0.741
34 H 0.065 0.935
35 H 0.064 0.936
36 H 0.399 0.601
37 H 0.096 0.904
38 H 0.080 0.920
39 H 0.069 0.931
40 H 0.081 0.919
41 H 0.400 0.600
42 H 0.108 0.892
43 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.428 3.328 21.099 21.814
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.074 4.074
3 C -0.185 4.185
4 C -0.001 4.001
5 C -0.549 4.549
6 H 0.078 0.922
7 C -0.145 4.145
8 N -0.534 5.534
9 Si 0.717 3.283
10 H -0.198 1.198
11 H -0.211 1.211
12 H -0.211 1.211
13 C 0.004 3.996
14 N -0.370 5.370
15 C 0.298 3.702
16 O -0.418 6.418
17 C -0.134 4.134
18 H 0.122 0.878
19 C -0.155 4.155
20 C -0.015 4.015
21 N -0.374 5.374
22 C 0.312 3.688
23 O -0.434 6.434
24 C -0.167 4.167
25 H 0.047 0.953
26 H 0.086 0.914
27 H 0.066 0.934
28 H 0.067 0.933
29 H 0.086 0.914
30 H 0.048 0.952
31 H 0.037 0.963
32 H 0.036 0.964
33 H 0.069 0.931
34 H 0.083 0.917
35 H 0.083 0.917
36 H 0.234 0.766
37 H 0.115 0.885
38 H 0.099 0.901
39 H 0.087 0.913
40 H 0.100 0.900
41 H 0.235 0.765
42 H 0.126 0.874
43 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -3.783 2.992 20.844 21.394
hybrid contribution -0.616 0.789 -0.723 1.235
sum -4.399 3.781 20.121 20.940
Atomic orbital electron populations
1.21766 0.95261 1.01148 1.00276 1.20914 0.95482 0.95899 0.95063
1.21768 1.00579 0.95830 1.00313 1.19090 0.96362 0.95203 0.89487
1.21222 1.31144 1.12077 0.90502 0.92184 1.25015 0.95305 0.95068
0.99115 1.69973 1.36988 1.23058 1.23359 0.86595 0.78627 0.79687
0.83433 1.19779 1.21116 1.21137 1.21657 0.98983 0.96037 0.82886
1.46244 1.52938 1.31851 1.05921 1.20297 0.80727 0.84712 0.84509
1.90713 1.37901 1.26438 1.86787 1.21471 1.02575 0.94869 0.94526
0.87773 1.21722 1.01668 1.00996 0.91156 1.21461 1.01133 0.79390
0.99520 1.45499 1.72085 1.08397 1.11380 1.20019 0.75546 0.87043
0.86218 1.90786 1.51990 1.14540 1.86050 1.21663 1.04948 0.94741
0.95394 0.95273 0.91381 0.93359 0.93320 0.91373 0.95234 0.96340
0.96357 0.93079 0.91707 0.91725 0.76591 0.88506 0.90106 0.91301
0.90021 0.76521 0.87411 0.87410
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.13 8.05 37.16 0.30 -1.84 16
2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16
3 C -0.13 -2.16 8.05 37.15 0.30 -1.86 16
4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16
5 C -0.51 -13.35 7.65 -34.44 -0.26 -13.62 16
6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16
7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16
8 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16
9 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16
10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16
13 C 0.13 2.11 4.56 -4.04 -0.02 2.09 16
14 N -0.72 -9.31 4.87 -60.30 -0.29 -9.61 16
15 C 0.51 6.52 7.13 -10.98 -0.08 6.44 16
16 O -0.54 -8.98 15.90 5.55 0.09 -8.89 16
17 C -0.11 -0.97 2.60 -91.55 -0.24 -1.21 16
18 H 0.10 0.73 8.13 -51.93 -0.42 0.30 16
19 C -0.12 -0.87 4.70 -26.59 -0.13 -0.99 16
20 C 0.11 0.55 7.17 -4.49 -0.03 0.52 16
21 N -0.72 -5.16 5.45 -61.39 -0.33 -5.49 16
22 C 0.52 5.38 7.71 -11.87 -0.09 5.29 16
23 O -0.56 -8.03 17.78 5.55 0.10 -7.93 16
24 C -0.13 -1.14 5.21 -28.10 -0.15 -1.29 16
25 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16
26 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16
27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
29 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16
30 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16
31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
36 H 0.40 4.36 5.92 -40.82 -0.24 4.12 16
37 H 0.10 0.74 7.90 -51.93 -0.41 0.33 16
38 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16
39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16
41 H 0.40 2.43 8.80 -40.82 -0.36 2.07 16
42 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16
43 H 0.11 0.90 7.97 -51.93 -0.41 0.48 16
LS Contribution 342.04 15.07 5.15 5.15
Total: -1.00 -33.05 342.04 -7.16 -40.22
By element:
Atomic # 1 Polarization: 8.56 SS G_CDS: -6.90 Total: 1.65 kcal
Atomic # 6 Polarization: -4.99 SS G_CDS: -0.69 Total: -5.68 kcal
Atomic # 7 Polarization: -40.62 SS G_CDS: 0.11 Total: -40.51 kcal
Atomic # 8 Polarization: -17.01 SS G_CDS: 0.19 Total: -16.82 kcal
Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -33.05 -7.16 -40.22 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000359759647.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.348 kcal
(2) G-P(sol) polarization free energy of solvation -33.054 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.402 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.566 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds