Wall clock time and date at job start Tue Mar 31 2020 02:05:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52995 * 109.46977 * 2 1
4 4 C 1.52998 * 109.46950 * 240.00462 * 2 1 3
5 5 C 1.50698 * 109.47245 * 59.99972 * 4 2 1
6 6 H 1.08001 * 120.00092 * 359.97438 * 5 4 2
7 7 C 1.37882 * 120.00154 * 180.02562 * 5 4 2
8 8 N 1.31511 * 119.99696 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 119.99906 * 179.97438 * 7 5 4
10 10 H 1.48496 * 109.47329 * 359.97438 * 9 7 5
11 11 H 1.48507 * 109.47077 * 119.99763 * 9 7 5
12 12 H 1.48504 * 109.47058 * 239.99517 * 9 7 5
13 13 C 1.52999 * 109.47258 * 120.00260 * 2 1 3
14 14 N 1.46497 * 109.46992 * 300.00045 * 13 2 1
15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 2
16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13
17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13
18 18 H 1.08992 * 109.67552 * 59.78037 * 17 15 14
19 19 C 1.53346 * 109.67528 * 180.28052 * 17 15 14
20 20 C 1.52923 * 108.67636 * 187.26313 * 19 17 15
21 21 N 1.45742 * 110.48680 * 309.24601 * 20 19 17
22 22 C 1.33357 * 124.10840 * 19.09790 * 21 20 19
23 23 O 1.21284 * 118.24656 * 177.78043 * 22 21 20
24 24 C 1.50170 * 123.50764 * 357.72681 * 22 21 20
25 25 H 1.08998 * 109.46912 * 299.99187 * 1 2 3
26 26 H 1.08994 * 109.47328 * 60.00002 * 1 2 3
27 27 H 1.09007 * 109.46697 * 179.97438 * 1 2 3
28 28 H 1.09003 * 109.47465 * 179.97438 * 3 2 1
29 29 H 1.09001 * 109.47749 * 300.00235 * 3 2 1
30 30 H 1.09003 * 109.46864 * 60.00231 * 3 2 1
31 31 H 1.08995 * 109.47215 * 179.97438 * 4 2 1
32 32 H 1.09001 * 109.47513 * 300.00092 * 4 2 1
33 33 H 0.97008 * 120.00088 * 180.02562 * 8 7 5
34 34 H 1.08995 * 109.46838 * 179.97438 * 13 2 1
35 35 H 1.09001 * 109.46617 * 60.00267 * 13 2 1
36 36 H 0.97000 * 120.00580 * 0.02562 * 14 13 2
37 37 H 1.09007 * 109.59747 * 307.01925 * 19 17 15
38 38 H 1.08999 * 109.60676 * 67.50208 * 19 17 15
39 39 H 1.09001 * 109.29740 * 69.56094 * 20 19 17
40 40 H 1.09004 * 109.29932 * 188.92761 * 20 19 17
41 41 H 0.97004 * 117.94640 * 199.07756 * 21 20 19
42 42 H 1.08996 * 109.42467 * 257.48942 * 24 22 21
43 43 H 1.09004 * 109.39131 * 137.74209 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7211 -1.2493
5 6 1.5377 -0.0107 -2.4797
6 1 0.9164 0.8672 -2.3806
7 6 1.8703 -0.4819 -3.7320
8 7 2.6264 -1.5512 -3.8528
9 14 1.2470 0.3984 -5.2571
10 1 0.4216 1.5648 -4.8529
11 1 2.4017 0.8650 -6.0660
12 1 0.4218 -0.5352 -6.0651
13 6 2.0401 -0.7213 1.2492
14 7 1.5518 -0.0307 2.4454
15 6 1.8770 -0.4916 3.6694
16 8 2.5743 -1.4777 3.7806
17 6 1.3798 0.2223 4.8999
18 1 0.2899 0.2328 4.9029
19 6 1.8926 -0.4940 6.1551
20 6 1.2313 0.1346 7.3823
21 7 1.3736 1.5848 7.3517
22 6 1.6550 2.2855 6.2525
23 8 1.7090 3.4940 6.3404
24 6 1.9097 1.6583 4.9121
25 1 -0.3633 0.5137 0.8901
26 1 -0.3634 0.5138 -0.8899
27 1 -0.3633 -1.0278 -0.0005
28 1 3.1300 1.4426 0.0005
29 1 1.6767 1.9564 -0.8899
30 1 1.6767 1.9562 0.8900
31 1 3.1300 -0.7208 -1.2496
32 1 1.6767 -1.7488 -1.2494
33 1 2.8607 -1.8826 -4.7338
34 1 3.1300 -0.7217 1.2489
35 1 1.6768 -1.7490 1.2490
36 1 0.9938 0.7577 2.3565
37 1 1.6356 -1.5521 6.1029
38 1 2.9745 -0.3811 6.2244
39 1 0.1724 -0.1235 7.3928
40 1 1.7028 -0.2548 8.2847
41 1 1.2559 2.0707 8.1829
42 1 2.9814 1.6505 4.7134
43 1 1.4038 2.2375 4.1395
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000359759647.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:05:26
Heat of formation + Delta-G solvation = -127.659016 kcal
Electronic energy + Delta-G solvation = -22587.139610 eV
Core-core repulsion = 19243.936690 eV
Total energy + Delta-G solvation = -3343.202920 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.70342 -40.51343 -38.72819 -37.25327 -35.27476 -34.35381 -33.63016 -30.63302
-29.12910 -27.94521 -27.92559 -26.11704 -24.85537 -23.74183 -21.41010 -20.20372
-19.83180 -18.51676 -18.35147 -17.88343 -17.31405 -16.71613 -16.40537 -16.38274
-16.17329 -15.38547 -15.13023 -15.07770 -14.64046 -14.53908 -14.39133 -14.27284
-13.92887 -13.65916 -12.89598 -12.84304 -12.71069 -12.69837 -12.56817 -12.32860
-12.23540 -12.08578 -12.04474 -11.93038 -11.52141 -11.40063 -11.03956 -10.85767
-10.55466 -10.51669 -10.05578 -10.03799 -8.13906 -6.21258 1.41599 1.43164
1.54459 1.55712 1.62772 2.20367 2.33380 2.45196 3.20934 3.44285
3.61890 3.71212 3.78237 3.99121 4.10682 4.22169 4.24450 4.26313
4.43551 4.63855 4.70098 4.74497 4.75661 4.80668 4.90291 4.98224
5.03475 5.12747 5.14498 5.24015 5.41769 5.48817 5.52262 5.55945
5.59041 5.81945 5.83889 5.91184 6.30711 6.31369 6.59201 6.94542
7.18568 7.26615 7.46630 8.98765
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.033941 B = 0.003232 C = 0.003057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 824.769573 B = 8661.201725 C = 9158.137874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.066 4.066
3 C -0.123 4.123
4 C 0.040 3.960
5 C -0.512 4.512
6 H 0.072 0.928
7 C -0.005 4.005
8 N -0.938 5.938
9 Si 0.957 3.043
10 H -0.257 1.257
11 H -0.285 1.285
12 H -0.284 1.284
13 C 0.141 3.859
14 N -0.709 5.709
15 C 0.514 3.486
16 O -0.582 6.582
17 C -0.099 4.099
18 H 0.133 0.867
19 C -0.118 4.118
20 C 0.113 3.887
21 N -0.710 5.710
22 C 0.524 3.476
23 O -0.604 6.604
24 C -0.124 4.124
25 H 0.071 0.929
26 H 0.053 0.947
27 H 0.038 0.962
28 H 0.036 0.964
29 H 0.053 0.947
30 H 0.070 0.930
31 H -0.015 1.015
32 H -0.013 1.013
33 H 0.259 0.741
34 H 0.045 0.955
35 H 0.048 0.952
36 H 0.413 0.587
37 H 0.096 0.904
38 H 0.066 0.934
39 H 0.092 0.908
40 H 0.106 0.894
41 H 0.407 0.593
42 H 0.101 0.899
43 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.409 4.742 22.849 24.200
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.066 4.066
3 C -0.180 4.180
4 C 0.002 3.998
5 C -0.550 4.550
6 H 0.090 0.910
7 C -0.202 4.202
8 N -0.580 5.580
9 Si 0.782 3.218
10 H -0.181 1.181
11 H -0.211 1.211
12 H -0.211 1.211
13 C 0.017 3.983
14 N -0.361 5.361
15 C 0.301 3.699
16 O -0.462 6.462
17 C -0.120 4.120
18 H 0.151 0.849
19 C -0.156 4.156
20 C -0.010 4.010
21 N -0.360 5.360
22 C 0.312 3.688
23 O -0.487 6.487
24 C -0.164 4.164
25 H 0.090 0.910
26 H 0.072 0.928
27 H 0.057 0.943
28 H 0.055 0.945
29 H 0.072 0.928
30 H 0.089 0.911
31 H 0.004 0.996
32 H 0.005 0.995
33 H 0.068 0.932
34 H 0.064 0.936
35 H 0.066 0.934
36 H 0.251 0.749
37 H 0.114 0.886
38 H 0.085 0.915
39 H 0.111 0.889
40 H 0.124 0.876
41 H 0.243 0.757
42 H 0.119 0.881
43 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -5.798 4.409 22.635 23.778
hybrid contribution 0.039 0.264 -1.199 1.228
sum -5.759 4.672 21.436 22.682
Atomic orbital electron populations
1.21699 0.93525 1.01032 1.01661 1.20713 0.96754 0.96209 0.92938
1.21707 0.99917 0.94742 1.01650 1.18972 0.94237 0.94216 0.92364
1.21640 1.30254 1.12016 0.91118 0.90966 1.25931 0.95715 0.95864
1.02679 1.70123 1.38866 1.25001 1.23997 0.85518 0.78044 0.78851
0.79362 1.18068 1.21148 1.21058 1.21197 0.97775 0.95430 0.83920
1.46042 1.53051 1.32021 1.04976 1.21013 0.79587 0.84117 0.85204
1.90705 1.39645 1.28472 1.87340 1.21455 1.04023 0.94022 0.92525
0.84939 1.21735 1.01126 1.01130 0.91652 1.21622 1.02563 0.77634
0.99199 1.45504 1.70278 1.09356 1.10898 1.20143 0.75153 0.86453
0.87063 1.90770 1.54563 1.16552 1.86790 1.21630 1.04738 0.94766
0.95282 0.90994 0.92791 0.94283 0.94456 0.92757 0.91072 0.99647
0.99506 0.93201 0.93612 0.93361 0.74937 0.88561 0.91482 0.88949
0.87589 0.75699 0.88081 0.86408
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.88 8.05 71.98 0.58 -3.30 16
2 C -0.07 -2.38 0.54 -52.18 -0.03 -2.40 16
3 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16
4 C 0.04 1.98 4.04 29.85 0.12 2.10 16
5 C -0.51 -27.11 7.65 25.60 0.20 -26.92 16
6 H 0.07 3.59 5.68 -2.91 -0.02 3.57 16
7 C -0.01 -0.28 5.46 84.66 0.46 0.18 16
8 N -0.94 -56.71 13.29 21.45 0.28 -56.43 16
9 Si 0.96 43.36 29.54 68.60 2.03 45.39 16
10 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16
11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16
12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16
13 C 0.14 4.70 4.56 86.38 0.39 5.09 16
14 N -0.71 -16.99 4.87 -463.07 -2.26 -19.24 16
15 C 0.51 12.20 7.13 87.66 0.62 12.82 16
16 O -0.58 -19.08 15.90 -3.04 -0.05 -19.12 16
17 C -0.10 -1.41 2.60 -11.40 -0.03 -1.44 16
18 H 0.13 1.24 8.13 -2.39 -0.02 1.22 16
19 C -0.12 -1.45 4.70 30.68 0.14 -1.30 16
20 C 0.11 0.71 7.17 86.50 0.62 1.33 16
21 N -0.71 -8.05 5.45 -467.33 -2.55 -10.59 16
22 C 0.52 9.62 7.71 87.71 0.68 10.30 16
23 O -0.60 -16.77 17.78 -3.04 -0.05 -16.83 16
24 C -0.12 -1.92 5.21 29.71 0.15 -1.77 16
25 H 0.07 1.66 6.86 -2.39 -0.02 1.65 16
26 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16
27 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16
28 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16
29 H 0.05 1.92 6.62 -2.39 -0.02 1.90 16
30 H 0.07 1.70 6.86 -2.39 -0.02 1.69 16
31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16
32 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16
33 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16
34 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16
35 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16
36 H 0.41 7.53 5.92 -92.71 -0.55 6.98 16
37 H 0.10 1.25 7.90 -2.38 -0.02 1.23 16
38 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16
39 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16
40 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16
41 H 0.41 3.82 8.80 -92.71 -0.82 3.00 16
42 H 0.10 1.73 8.09 -2.39 -0.02 1.72 16
43 H 0.12 1.59 7.97 -2.39 -0.02 1.57 16
Total: -1.00 -75.21 342.04 1.55 -73.65
By element:
Atomic # 1 Polarization: 12.24 SS G_CDS: -0.35 Total: 11.89 kcal
Atomic # 6 Polarization: -13.21 SS G_CDS: 4.49 Total: -8.72 kcal
Atomic # 7 Polarization: -81.74 SS G_CDS: -4.52 Total: -86.26 kcal
Atomic # 8 Polarization: -35.85 SS G_CDS: -0.10 Total: -35.95 kcal
Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal
Total: -75.21 1.55 -73.65 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000359759647.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.008 kcal
(2) G-P(sol) polarization free energy of solvation -75.205 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.214 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.659 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds