Wall clock time and date at job start Tue Mar 31 2020 02:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47119 * 2 1 4 4 C 1.52998 * 109.47448 * 239.99840 * 2 1 3 5 5 C 1.50692 * 109.47064 * 59.99993 * 4 2 1 6 6 H 1.08002 * 120.00451 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99951 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99896 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46915 * 60.00462 * 9 7 5 11 11 H 1.48507 * 109.46958 * 180.02562 * 9 7 5 12 12 H 1.48488 * 109.47361 * 300.00028 * 9 7 5 13 13 C 1.53000 * 109.46962 * 119.99715 * 2 1 3 14 14 N 1.46502 * 109.47207 * 300.00230 * 13 2 1 15 15 C 1.34778 * 120.00032 * 180.02562 * 14 13 2 16 16 O 1.21277 * 120.00020 * 359.97438 * 15 14 13 17 17 C 1.50705 * 120.00008 * 180.02562 * 15 14 13 18 18 H 1.08999 * 109.66891 * 300.49564 * 17 15 14 19 19 C 1.53337 * 109.67393 * 179.97438 * 17 15 14 20 20 C 1.52916 * 108.67361 * 172.73380 * 19 17 15 21 21 N 1.45755 * 110.49186 * 50.75078 * 20 19 17 22 22 C 1.33356 * 124.10311 * 341.21270 * 21 20 19 23 23 O 1.21278 * 118.24707 * 181.94166 * 22 21 20 24 24 C 1.50165 * 123.51899 * 1.65368 * 22 21 20 25 25 H 1.09000 * 109.47095 * 300.00237 * 1 2 3 26 26 H 1.08997 * 109.46709 * 60.00274 * 1 2 3 27 27 H 1.09002 * 109.46646 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47342 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46422 * 299.99770 * 3 2 1 30 30 H 1.08998 * 109.46732 * 59.99463 * 3 2 1 31 31 H 1.09001 * 109.46834 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47222 * 299.99677 * 4 2 1 33 33 H 0.97000 * 119.99591 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47410 * 180.02562 * 13 2 1 35 35 H 1.09001 * 109.47567 * 60.00081 * 13 2 1 36 36 H 0.96999 * 120.00141 * 359.97438 * 14 13 2 37 37 H 1.09006 * 109.60302 * 52.97745 * 19 17 15 38 38 H 1.09000 * 109.60365 * 292.49112 * 19 17 15 39 39 H 1.09000 * 109.30245 * 290.43987 * 20 19 17 40 40 H 1.09004 * 109.13800 * 170.96139 * 20 19 17 41 41 H 0.97001 * 117.94686 * 160.92028 * 21 20 19 42 42 H 1.08999 * 109.54019 * 222.65674 * 24 22 21 43 43 H 1.09000 * 109.19490 * 102.95044 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4796 6 1 0.9172 0.8674 -2.3806 7 6 1.8714 -0.4817 -3.7319 8 7 2.6275 -1.5510 -3.8524 9 14 1.2482 0.3984 -5.2572 10 1 1.7421 1.7989 -5.2571 11 1 1.7434 -0.3016 -6.4697 12 1 -0.2367 0.3973 -5.2573 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6696 16 8 2.5748 -1.4767 3.7809 17 6 1.3747 0.2194 4.9001 18 1 1.7281 1.2505 4.8988 19 6 1.8833 -0.4997 6.1552 20 6 1.5156 0.3366 7.3815 21 7 0.1009 0.6864 7.3550 22 6 -0.6589 0.6464 6.2597 23 8 -1.8169 0.9947 6.3514 24 6 -0.1558 0.1991 4.9174 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1301 -0.7216 -1.2488 32 1 1.6768 -1.7490 -1.2492 33 1 2.8625 -1.8819 -4.7334 34 1 3.1300 -0.7208 1.2496 35 1 1.6767 -1.7489 1.2494 36 1 0.9942 0.7583 2.3564 37 1 2.9663 -0.6106 6.0996 38 1 1.4160 -1.4817 6.2287 39 1 2.1121 1.2489 7.3875 40 1 1.7277 -0.2384 8.2829 41 1 -0.3150 0.9616 8.1870 42 1 -0.5356 0.8673 4.1446 43 1 -0.5067 -0.8143 4.7227 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359759648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:28 Heat of formation + Delta-G solvation = -103.489371 kcal Electronic energy + Delta-G solvation = -22584.575944 eV Core-core repulsion = 19242.421098 eV Total energy + Delta-G solvation = -3342.154846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87305 -39.47520 -37.33785 -36.41504 -33.87249 -33.27200 -32.04578 -29.97001 -27.25914 -26.66013 -26.54816 -25.16347 -23.54136 -22.52123 -20.33254 -19.52480 -18.44132 -17.68236 -16.90271 -16.57526 -16.31664 -15.69299 -15.40575 -15.15096 -14.61411 -14.45490 -14.19905 -13.83493 -13.73910 -13.29893 -13.13376 -12.80006 -12.23001 -12.18309 -12.07780 -11.98846 -11.43954 -11.39754 -11.18616 -11.02710 -10.89274 -10.65869 -10.44701 -10.42973 -10.29359 -9.91174 -9.70558 -9.45347 -9.18605 -8.96128 -8.81530 -8.37660 -6.01918 -4.03426 2.32974 2.64030 2.93708 3.25611 3.30975 3.36479 3.38049 4.15985 4.29401 4.38476 4.41427 4.44049 4.88868 4.90145 4.94393 5.16653 5.32534 5.33547 5.42740 5.48482 5.57504 5.60788 5.70849 5.81570 6.12580 6.17740 6.23171 6.34562 6.40258 6.49746 6.59744 6.70494 6.95589 7.02531 7.04168 7.08845 7.60395 7.63771 7.73038 7.87878 7.96478 8.29208 8.38608 9.01183 9.59909 11.09495 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033972 B = 0.003230 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.004185 B = 8666.188248 C = 9161.530613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.127 3.873 14 N -0.718 5.718 15 C 0.513 3.487 16 O -0.541 6.541 17 C -0.113 4.113 18 H 0.104 0.896 19 C -0.118 4.118 20 C 0.109 3.891 21 N -0.721 5.721 22 C 0.525 3.475 23 O -0.555 6.555 24 C -0.127 4.127 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.399 0.601 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.400 0.600 42 H 0.108 0.892 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 5.295 21.061 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.370 5.370 15 C 0.298 3.702 16 O -0.418 6.418 17 C -0.134 4.134 18 H 0.122 0.878 19 C -0.156 4.156 20 C -0.015 4.015 21 N -0.374 5.374 22 C 0.312 3.688 23 O -0.434 6.434 24 C -0.168 4.168 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.235 0.765 42 H 0.126 0.874 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.518 4.565 20.802 21.351 hybrid contribution -0.556 0.858 -0.712 1.246 sum -2.074 5.423 20.089 20.911 Atomic orbital electron populations 1.21768 0.95198 1.01215 1.00304 1.20917 0.95523 0.95858 0.95067 1.21764 1.00526 0.95884 1.00268 1.19077 0.96316 0.95209 0.89452 1.21144 1.31309 1.12121 0.90532 0.92296 1.25011 0.95278 0.95064 0.99087 1.69952 1.36856 1.23004 1.23589 0.86709 0.79182 0.79761 0.82646 1.20315 1.21390 1.20300 1.21662 0.98949 0.96064 0.82885 1.46247 1.52898 1.31895 1.05923 1.20297 0.80689 0.84751 0.84507 1.90711 1.38119 1.26223 1.86784 1.21469 0.95592 1.01849 0.94523 0.87764 1.21724 1.03640 0.99022 0.91176 1.21467 0.80937 0.99568 0.99534 1.45503 1.11370 1.68923 1.11569 1.20016 0.85651 0.76914 0.86245 1.90784 1.17981 1.48626 1.85980 1.21659 0.94381 1.05343 0.95370 0.95232 0.91381 0.93320 0.93360 0.91385 0.95278 0.96375 0.96358 0.92958 0.91722 0.91707 0.76597 0.88501 0.90112 0.91252 0.90034 0.76520 0.87379 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 4 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 5 C -0.51 -13.41 7.65 -34.44 -0.26 -13.67 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 9 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.13 2.11 4.56 -4.04 -0.02 2.09 16 14 N -0.72 -9.32 4.87 -60.29 -0.29 -9.61 16 15 C 0.51 6.52 7.13 -10.98 -0.08 6.44 16 16 O -0.54 -8.98 15.90 5.56 0.09 -8.89 16 17 C -0.11 -0.97 2.60 -91.56 -0.24 -1.21 16 18 H 0.10 0.73 8.13 -51.93 -0.42 0.30 16 19 C -0.12 -0.87 4.70 -26.60 -0.13 -1.00 16 20 C 0.11 0.55 7.17 -4.49 -0.03 0.52 16 21 N -0.72 -5.16 5.45 -61.39 -0.33 -5.49 16 22 C 0.52 5.38 7.71 -11.88 -0.09 5.29 16 23 O -0.56 -8.04 17.78 5.56 0.10 -7.94 16 24 C -0.13 -1.14 5.21 -28.11 -0.15 -1.29 16 25 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 26 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 30 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.40 4.36 5.93 -40.82 -0.24 4.12 16 37 H 0.10 0.74 7.90 -51.93 -0.41 0.33 16 38 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.40 2.43 8.80 -40.82 -0.36 2.07 16 42 H 0.11 0.90 7.98 -51.93 -0.41 0.49 16 43 H 0.11 1.00 8.09 -51.93 -0.42 0.58 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -33.03 342.06 -7.16 -40.19 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.90 Total: 1.73 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -0.69 Total: -5.69 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.11 Total: -40.55 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.19 Total: -16.83 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.03 -7.16 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359759648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.299 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds