Wall clock time and date at job start Tue Mar 31 2020 02:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46762 * 124.34850 * 2 1 4 4 C 1.54479 * 105.53509 * 163.21275 * 3 2 1 5 5 H 1.09002 * 110.97085 * 143.33080 * 4 3 2 6 6 C 1.50698 * 110.97021 * 267.08919 * 4 3 2 7 7 O 1.21279 * 120.00477 * 353.83695 * 6 4 3 8 8 N 1.34782 * 119.99866 * 173.83317 * 6 4 3 9 9 C 1.46498 * 119.99918 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47228 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47427 * 300.00358 * 10 9 8 12 12 C 1.52996 * 109.46581 * 60.00239 * 10 9 8 13 13 C 1.52996 * 109.47060 * 179.97438 * 10 9 8 14 14 C 1.50702 * 109.47167 * 180.02562 * 13 10 9 15 15 H 1.08003 * 119.99460 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00376 * 180.02562 * 14 13 10 17 17 N 1.31512 * 120.00199 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00011 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47022 * 90.00248 * 18 16 14 20 20 H 1.48494 * 109.47448 * 210.00135 * 18 16 14 21 21 H 1.48504 * 109.47082 * 330.00470 * 18 16 14 22 22 C 1.54623 * 101.76448 * 25.20998 * 4 3 2 23 23 C 1.34417 * 124.35094 * 179.82764 * 2 1 3 24 24 O 1.21283 * 124.94355 * 0.43141 * 23 2 1 25 25 H 1.08998 * 109.46843 * 180.19427 * 1 2 3 26 26 H 1.09000 * 109.46978 * 300.19813 * 1 2 3 27 27 H 1.09003 * 109.47376 * 60.19602 * 1 2 3 28 28 H 1.09004 * 110.38933 * 44.10688 * 3 2 1 29 29 H 1.08994 * 110.04470 * 282.14598 * 3 2 1 30 30 H 0.96999 * 120.00334 * 359.97438 * 8 6 4 31 31 H 1.09002 * 109.47083 * 300.00210 * 9 8 6 32 32 H 1.09004 * 109.47352 * 60.00010 * 9 8 6 33 33 H 1.08997 * 109.47264 * 59.99449 * 11 10 9 34 34 H 1.08998 * 109.47397 * 179.97438 * 11 10 9 35 35 H 1.09010 * 109.46678 * 299.99744 * 11 10 9 36 36 H 1.08998 * 109.47380 * 60.00080 * 12 10 9 37 37 H 1.09007 * 109.47257 * 179.97438 * 12 10 9 38 38 H 1.09004 * 109.47773 * 299.99718 * 12 10 9 39 39 H 1.08998 * 109.47503 * 300.00289 * 13 10 9 40 40 H 1.09004 * 109.47218 * 60.00694 * 13 10 9 41 41 H 0.97008 * 120.00219 * 179.97438 * 17 16 14 42 42 H 1.09000 * 110.48720 * 216.52574 * 22 4 3 43 43 H 1.09003 * 110.60041 * 93.93250 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7029 0.7493 0.4299 5 1 4.4749 1.3010 -0.1067 6 6 3.8838 0.8841 1.9199 7 8 3.0227 1.4138 2.5899 8 7 5.0025 0.4159 2.5080 9 6 5.1780 0.5464 3.9566 10 6 6.5215 -0.0616 4.3643 11 6 6.5497 -1.5418 3.9785 12 6 7.6536 0.6746 3.6450 13 6 6.7051 0.0753 5.8771 14 6 8.0287 -0.5229 6.2786 15 1 8.6746 -0.9569 5.5296 16 6 8.4152 -0.5162 7.6020 17 7 9.5705 -1.0378 7.9524 18 14 7.2985 0.2351 8.8974 19 1 6.3839 -0.8079 9.4277 20 1 8.1228 0.7805 10.0056 21 1 6.5008 1.3299 8.2886 22 6 3.6898 -0.7377 0.0062 23 6 2.2234 -1.1097 0.0033 24 8 1.7946 -2.2442 -0.0007 25 1 -0.3633 -1.0277 0.0035 26 1 -0.3633 0.5169 0.8882 27 1 -0.3634 0.5108 -0.8917 28 1 1.9016 1.9392 0.7111 29 1 2.3260 1.6417 -1.0010 30 1 5.6910 -0.0082 1.9723 31 1 5.1575 1.6009 4.2315 32 1 4.3717 0.0216 4.4691 33 1 6.4191 -1.6389 2.9007 34 1 7.5070 -1.9748 4.2686 35 1 5.7431 -2.0662 4.4910 36 1 7.6336 1.7291 3.9199 37 1 8.6109 0.2418 3.9358 38 1 7.5231 0.5775 2.5672 39 1 6.6853 1.1300 6.1516 40 1 5.8986 -0.4489 6.3899 41 1 9.8426 -1.0328 8.8835 42 1 4.2359 -1.3449 0.7282 43 1 4.1154 -0.8564 -0.9902 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359760656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:30 Heat of formation + Delta-G solvation = -83.218310 kcal Electronic energy + Delta-G solvation = -22773.340518 eV Core-core repulsion = 19432.064692 eV Total energy + Delta-G solvation = -3341.275826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08863 -39.32281 -37.39347 -36.32105 -33.93276 -33.06816 -32.05220 -28.11756 -27.89723 -27.32612 -26.60451 -26.09814 -23.53927 -22.12201 -20.22268 -19.81780 -18.51938 -17.52016 -17.01911 -16.83533 -16.01736 -15.77947 -15.43920 -15.15201 -14.25076 -14.09195 -13.95154 -13.82138 -13.64390 -13.49013 -12.89709 -12.77305 -12.64370 -12.48781 -12.31735 -12.23428 -12.08843 -11.79659 -11.28308 -11.16913 -11.03622 -10.65184 -10.53872 -10.08858 -10.01931 -10.00828 -9.77186 -9.49638 -9.03037 -8.98669 -8.92642 -8.55729 -6.06410 -4.03948 2.34040 2.52998 2.76297 3.15015 3.30083 3.38172 3.41586 3.93477 4.02125 4.41754 4.43660 4.60939 4.95600 5.00667 5.02041 5.23333 5.25806 5.25936 5.32796 5.41080 5.45457 5.47496 5.49126 5.58718 6.04507 6.06090 6.11784 6.20033 6.25885 6.39645 6.55304 6.61523 6.82065 6.84836 6.97852 7.01471 7.16276 7.32818 7.51785 7.76231 7.91531 8.18773 8.50231 8.97385 9.56237 11.06274 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029931 B = 0.003511 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.256907 B = 7972.481508 C = 8117.607035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.619 5.619 3 C 0.116 3.884 4 C -0.127 4.127 5 H 0.127 0.873 6 C 0.515 3.485 7 O -0.538 6.538 8 N -0.716 5.716 9 C 0.125 3.875 10 C -0.063 4.063 11 C -0.129 4.129 12 C -0.128 4.128 13 C -0.002 4.002 14 C -0.512 4.512 15 H 0.078 0.922 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.148 4.148 23 C 0.517 3.483 24 O -0.532 6.532 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.401 0.599 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.018 0.982 40 H 0.013 0.987 41 H 0.263 0.737 42 H 0.108 0.892 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.115 5.431 -18.959 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.354 5.354 3 C -0.007 4.007 4 C -0.149 4.149 5 H 0.145 0.855 6 C 0.299 3.701 7 O -0.416 6.416 8 N -0.368 5.368 9 C 0.002 3.998 10 C -0.064 4.064 11 C -0.187 4.187 12 C -0.186 4.186 13 C -0.040 4.040 14 C -0.550 4.550 15 H 0.096 0.904 16 C -0.134 4.134 17 N -0.542 5.542 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.188 4.188 23 C 0.304 3.696 24 O -0.409 6.409 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.236 0.764 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.127 0.873 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.933 5.184 -18.299 23.000 hybrid contribution -0.133 0.272 0.646 0.713 sum -13.066 5.456 -17.654 22.631 Atomic orbital electron populations 1.21560 0.77809 1.03725 1.01654 1.48077 1.06743 1.07227 1.73343 1.22006 0.88523 0.87986 1.02193 1.22339 0.99832 0.97873 0.94848 0.85477 1.20152 0.82123 0.78599 0.89196 1.90702 1.42037 1.43705 1.65132 1.46132 1.20335 1.60206 1.10088 1.21680 0.98637 1.01128 0.78316 1.20699 0.91656 0.95085 0.98940 1.21785 1.03332 0.95600 0.97959 1.21774 0.99952 1.00006 0.96834 1.19589 0.97901 0.97003 0.89470 1.21070 1.01907 1.38134 0.93849 0.90369 1.24994 0.94896 0.94942 0.98565 1.69899 1.20921 1.45808 1.17613 0.86863 0.81032 0.80247 0.81644 1.20360 1.21481 1.19024 1.22393 0.95686 0.95227 1.05496 1.20808 0.89140 0.84464 0.75161 1.90736 1.78544 1.21040 1.50533 0.89973 0.91771 0.92016 0.88270 0.90215 0.76353 0.91647 0.91790 0.95028 0.90779 0.93366 0.93380 0.90809 0.95001 0.96368 0.96829 0.92766 0.87326 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.14 59.85 0.67 1.47 16 2 N -0.62 -6.37 3.33 -180.29 -0.60 -6.97 16 3 C 0.12 0.93 6.73 -3.12 -0.02 0.90 16 4 C -0.13 -1.01 3.54 -90.14 -0.32 -1.33 16 5 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 6 C 0.51 6.39 7.16 -10.98 -0.08 6.31 16 7 O -0.54 -8.80 15.51 5.56 0.09 -8.72 16 8 N -0.72 -8.89 4.68 -60.29 -0.28 -9.17 16 9 C 0.13 1.98 4.56 -4.04 -0.02 1.96 16 10 C -0.06 -1.11 0.54 -154.51 -0.08 -1.19 16 11 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 12 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 13 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 14 C -0.51 -13.49 8.20 -34.44 -0.28 -13.77 16 15 H 0.08 2.18 5.92 -52.48 -0.31 1.86 16 16 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 18 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 C -0.15 -1.24 6.39 -26.74 -0.17 -1.41 16 23 C 0.52 6.35 8.02 -10.86 -0.09 6.26 16 24 O -0.53 -8.67 17.35 5.55 0.10 -8.58 16 25 H 0.08 0.79 7.53 -51.93 -0.39 0.40 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.92 6.94 -51.93 -0.36 0.56 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.40 4.06 5.98 -40.82 -0.24 3.82 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 34 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 35 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 38 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 39 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 40 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.11 0.97 7.51 -51.93 -0.39 0.58 16 43 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -34.25 341.22 -6.27 -40.52 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.83 Total: 0.12 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 0.02 Total: -2.79 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.11 Total: -42.37 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.18 Total: -17.29 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.25 -6.27 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359760656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.703 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds