Wall clock time and date at job start Tue Mar 31 2020 02:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52998 * 109.47310 * 240.00093 * 2 1 3 5 5 C 1.50700 * 109.47147 * 59.99696 * 4 2 1 6 6 H 1.07999 * 120.00099 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99796 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00225 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99789 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47496 * 90.00335 * 9 7 5 11 11 H 1.48506 * 109.47280 * 210.00047 * 9 7 5 12 12 H 1.48503 * 109.47455 * 330.00096 * 9 7 5 13 13 C 1.53006 * 109.47140 * 119.99901 * 2 1 3 14 14 N 1.46497 * 109.46826 * 300.00491 * 13 2 1 15 15 C 1.34775 * 119.99843 * 180.02562 * 14 13 2 16 16 O 1.21279 * 120.00041 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00244 * 179.97438 * 15 14 13 18 18 H 1.09000 * 109.60296 * 60.32108 * 17 15 14 19 19 C 1.53347 * 109.60737 * 180.81209 * 17 15 14 20 20 C 1.52879 * 108.58835 * 187.09953 * 19 17 15 21 21 C 1.50174 * 109.99069 * 311.48436 * 20 19 17 22 22 O 1.21283 * 118.25021 * 197.39652 * 21 20 19 23 23 N 1.33350 * 123.50638 * 17.11174 * 21 20 19 24 24 C 1.45761 * 124.10804 * 358.03930 * 23 21 20 25 25 H 1.08999 * 109.47202 * 299.99915 * 1 2 3 26 26 H 1.09002 * 109.47172 * 60.00259 * 1 2 3 27 27 H 1.09003 * 109.46847 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47157 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47004 * 299.99844 * 3 2 1 30 30 H 1.08999 * 109.47130 * 60.00041 * 3 2 1 31 31 H 1.08999 * 109.47323 * 180.02562 * 4 2 1 32 32 H 1.09003 * 109.47126 * 299.99781 * 4 2 1 33 33 H 0.96997 * 120.00250 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46855 * 180.02562 * 13 2 1 35 35 H 1.08997 * 109.46528 * 59.99989 * 13 2 1 36 36 H 0.96997 * 120.00479 * 359.97438 * 14 13 2 37 37 H 1.09001 * 109.67180 * 307.02549 * 19 17 15 38 38 H 1.09007 * 109.67237 * 67.51614 * 19 17 15 39 39 H 1.09003 * 109.50709 * 191.22915 * 20 19 17 40 40 H 1.08998 * 109.19902 * 71.55208 * 20 19 17 41 41 H 0.97001 * 117.94701 * 178.05410 * 23 21 20 42 42 H 1.08997 * 109.29941 * 139.40896 * 24 23 21 43 43 H 1.09001 * 109.30036 * 258.78074 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8713 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2492 0.3993 -5.2571 10 1 2.2275 1.4411 -5.6608 11 1 1.0846 -0.5796 -6.3617 12 1 -0.0591 1.0368 -4.9616 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4908 3.6695 16 8 2.5749 -1.4768 3.7808 17 6 1.3756 0.2199 4.8999 18 1 0.2857 0.2161 4.9054 19 6 1.9022 -0.4883 6.1540 20 6 1.2402 0.1379 7.3815 21 6 1.3304 1.6350 7.3058 22 8 1.1520 2.2730 8.3217 23 7 1.6016 2.3002 6.1823 24 6 1.8838 1.6622 4.9025 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6768 -1.7489 -1.2492 33 1 2.8618 -1.8823 -4.7336 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.9942 0.7582 2.3564 37 1 1.6588 -1.5497 6.1055 38 1 2.9829 -0.3624 6.2201 39 1 1.7434 -0.2099 8.2837 40 1 0.1924 -0.1605 7.4151 41 1 1.6120 3.2695 6.2192 42 1 1.3908 2.2193 4.1058 43 1 2.9597 1.6656 4.7277 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359761579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:19 Heat of formation + Delta-G solvation = -103.574018 kcal Electronic energy + Delta-G solvation = -22522.433034 eV Core-core repulsion = 19180.274518 eV Total energy + Delta-G solvation = -3342.158516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88486 -39.56388 -37.38503 -36.36755 -33.79085 -33.30944 -32.20352 -30.35781 -27.19299 -26.60554 -26.30966 -25.05744 -23.67051 -22.62372 -20.66495 -19.51734 -18.50599 -17.68678 -16.82859 -16.50372 -16.29767 -15.78219 -15.41176 -15.17496 -14.59803 -14.42963 -14.29492 -13.96814 -13.73245 -13.34785 -13.18367 -12.85167 -12.31571 -12.22102 -12.09968 -12.03760 -11.58472 -11.35663 -11.23806 -11.08032 -10.90993 -10.71120 -10.48773 -10.32145 -10.07204 -9.96124 -9.92958 -9.47540 -9.24504 -8.99290 -8.87927 -8.41224 -6.05262 -4.06934 2.32457 2.53865 2.92278 3.21809 3.26936 3.34518 3.35864 4.16509 4.26069 4.31519 4.40109 4.42878 4.87155 4.95263 4.96139 5.08862 5.29660 5.30297 5.40140 5.47454 5.52941 5.65191 5.65946 5.84080 6.06336 6.11934 6.18462 6.29060 6.39515 6.43743 6.54297 6.64655 6.93969 6.97378 6.99223 7.04125 7.55396 7.58410 7.69117 7.87146 7.92982 8.22796 8.34679 8.97883 9.56622 11.06143 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040051 B = 0.003067 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.932240 B = 9128.097056 C = 9527.547147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.127 3.873 14 N -0.719 5.719 15 C 0.516 3.484 16 O -0.536 6.536 17 C -0.126 4.126 18 H 0.107 0.893 19 C -0.104 4.104 20 C -0.136 4.136 21 C 0.520 3.480 22 O -0.560 6.560 23 N -0.718 5.718 24 C 0.119 3.881 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.402 0.598 42 H 0.085 0.915 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 5.663 17.029 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.004 3.996 14 N -0.370 5.370 15 C 0.300 3.700 16 O -0.413 6.413 17 C -0.148 4.148 18 H 0.125 0.875 19 C -0.142 4.142 20 C -0.175 4.175 21 C 0.307 3.693 22 O -0.439 6.439 23 N -0.370 5.370 24 C -0.006 4.006 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.238 0.762 42 H 0.103 0.897 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.074 4.897 17.468 18.400 hybrid contribution -0.558 1.133 -1.238 1.768 sum -3.633 6.030 16.230 17.691 Atomic orbital electron populations 1.21767 0.95242 1.01212 1.00238 1.20915 0.95483 0.95863 0.95078 1.21764 1.00578 0.95860 1.00222 1.19087 0.96358 0.95235 0.89454 1.21171 1.31298 1.12100 0.90510 0.92258 1.25013 0.95289 0.95052 0.99112 1.69959 1.36891 1.22970 1.23513 0.86651 0.79182 0.79428 0.83058 1.20759 1.21317 1.19939 1.21673 0.99005 0.96103 0.82808 1.46262 1.52991 1.31853 1.05925 1.20135 0.80754 0.84854 0.84277 1.90727 1.37630 1.26277 1.86654 1.21665 1.02943 0.95105 0.95104 0.87529 1.21459 1.01239 1.00955 0.90545 1.21661 1.04191 0.90832 1.00865 1.20271 0.75279 0.91187 0.82557 1.90768 1.50688 1.69038 1.33382 1.45422 1.71669 1.10782 1.09113 1.21326 1.01630 0.92213 0.85458 0.95305 0.91380 0.93324 0.93306 0.91386 0.95331 0.96342 0.96336 0.92989 0.91640 0.91662 0.76654 0.89160 0.90345 0.87620 0.87996 0.76223 0.89720 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.05 37.16 0.30 -1.75 16 2 C -0.07 -1.27 0.54 -154.51 -0.08 -1.35 16 3 C -0.13 -2.01 8.05 37.16 0.30 -1.71 16 4 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.10 7.65 -34.44 -0.26 -13.36 16 6 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 C 0.13 2.00 4.56 -4.04 -0.02 1.98 16 14 N -0.72 -8.57 4.86 -60.30 -0.29 -8.86 16 15 C 0.52 6.18 7.14 -10.99 -0.08 6.11 16 16 O -0.54 -8.68 15.89 5.56 0.09 -8.59 16 17 C -0.13 -1.02 2.60 -91.63 -0.24 -1.26 16 18 H 0.11 0.70 8.13 -51.93 -0.42 0.28 16 19 C -0.10 -0.85 4.70 -26.61 -0.13 -0.98 16 20 C -0.14 -1.02 6.03 -28.20 -0.17 -1.19 16 21 C 0.52 5.16 7.72 -11.87 -0.09 5.07 16 22 O -0.56 -7.86 17.78 5.55 0.10 -7.76 16 23 N -0.72 -5.48 5.45 -61.38 -0.33 -5.81 16 24 C 0.12 0.80 6.32 -4.48 -0.03 0.77 16 25 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 26 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.19 6.62 -51.93 -0.34 0.84 16 30 H 0.03 0.34 6.86 -51.93 -0.36 -0.01 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.40 3.81 5.78 -40.82 -0.24 3.58 16 37 H 0.09 0.79 7.89 -51.93 -0.41 0.38 16 38 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.40 2.69 8.80 -40.82 -0.36 2.33 16 42 H 0.08 0.42 7.83 -51.93 -0.41 0.01 16 43 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -32.44 341.74 -7.18 -39.61 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.89 Total: 1.19 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.71 Total: -5.50 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.11 Total: -39.73 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.19 Total: -16.35 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.44 -7.18 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.962 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds