Wall clock time and date at job start Tue Mar 31 2020 02:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 119.99813 * 2 1 4 4 O 1.21281 * 120.00013 * 355.00450 * 3 2 1 5 5 C 1.50706 * 120.00064 * 175.00463 * 3 2 1 6 6 C 1.50700 * 115.54687 * 65.94913 * 5 3 2 7 7 O 1.21275 * 120.00393 * 245.66425 * 6 5 3 8 8 N 1.34781 * 119.99762 * 65.66468 * 6 5 3 9 9 C 1.46497 * 119.99890 * 174.97451 * 8 6 5 10 10 C 1.53000 * 109.47246 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46905 * 300.00171 * 10 9 8 12 12 C 1.52995 * 109.47154 * 59.99955 * 10 9 8 13 13 C 1.53005 * 109.47152 * 180.02562 * 10 9 8 14 14 C 1.50703 * 109.46674 * 179.97438 * 13 10 9 15 15 H 1.07995 * 120.00446 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99391 * 179.97438 * 14 13 10 17 17 N 1.31517 * 120.00542 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99815 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47306 * 59.99752 * 18 16 14 20 20 H 1.48496 * 109.47333 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47146 * 299.99984 * 18 16 14 22 22 C 1.52998 * 117.49838 * 211.62224 * 5 3 2 23 23 C 1.52999 * 117.49794 * 280.28403 * 5 3 2 24 24 H 1.08995 * 109.47515 * 59.99801 * 1 2 3 25 25 H 1.09001 * 109.47336 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46781 * 299.99326 * 1 2 3 27 27 H 0.96998 * 120.00534 * 180.02562 * 2 1 3 28 28 H 0.96997 * 120.00010 * 354.97928 * 8 6 5 29 29 H 1.09001 * 109.47166 * 60.00012 * 9 8 6 30 30 H 1.09004 * 109.47217 * 300.00089 * 9 8 6 31 31 H 1.09001 * 109.47339 * 59.99939 * 11 10 9 32 32 H 1.09001 * 109.46964 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.47250 * 299.99414 * 11 10 9 34 34 H 1.09004 * 109.47124 * 60.00239 * 12 10 9 35 35 H 1.09001 * 109.46897 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.47124 * 300.00082 * 12 10 9 37 37 H 1.08992 * 109.46981 * 299.99364 * 13 10 9 38 38 H 1.08998 * 109.46908 * 59.99908 * 13 10 9 39 39 H 0.96999 * 120.00229 * 179.97438 * 17 16 14 40 40 H 1.09000 * 117.49830 * 214.99981 * 22 5 3 41 41 H 1.08994 * 117.50181 * 0.02562 * 22 5 3 42 42 H 1.09000 * 117.49645 * 359.97438 * 23 5 3 43 43 H 1.08995 * 117.49696 * 144.97113 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5359 2.2155 -0.0915 5 6 3.6416 1.1698 0.1136 6 6 4.3824 0.5632 -1.0501 7 8 5.0263 -0.4528 -0.8960 8 7 4.3293 1.1500 -2.2623 9 6 5.1361 0.6245 -3.3664 10 6 4.8932 1.4658 -4.6211 11 6 3.4116 1.4039 -4.9976 12 6 5.2893 2.9178 -4.3461 13 6 5.7354 0.9166 -5.7744 14 6 5.4956 1.7449 -7.0103 15 1 4.8114 2.5798 -6.9765 16 6 6.1506 1.4374 -8.1839 17 7 6.9843 0.4211 -8.2250 18 14 5.8540 2.4646 -9.7158 19 1 6.2384 3.8739 -9.4489 20 1 6.6713 1.9315 -10.8351 21 1 4.4159 2.4045 -10.0812 22 6 4.2942 2.3565 0.8255 23 6 4.2449 0.9870 1.5077 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.9500 -0.8400 -0.0004 28 1 3.7569 1.9202 -2.4037 29 1 4.8543 -0.4101 -3.5621 30 1 6.1917 0.6690 -3.0983 31 1 2.8112 1.7949 -4.1761 32 1 3.2386 2.0029 -5.8917 33 1 3.1294 0.3694 -5.1936 34 1 6.3449 2.9619 -4.0778 35 1 5.1166 3.5170 -5.2401 36 1 4.6889 3.3088 -3.5246 37 1 6.7910 0.9604 -5.5064 38 1 5.4528 -0.1178 -5.9701 39 1 7.4448 0.2046 -9.0508 40 1 5.2594 2.6985 0.4520 41 1 3.6367 3.1351 1.2119 42 1 3.5549 0.8654 2.3427 43 1 5.1774 0.4278 1.5832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359763068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:07 Heat of formation + Delta-G solvation = -65.737859 kcal Electronic energy + Delta-G solvation = -22801.495032 eV Core-core repulsion = 19460.977215 eV Total energy + Delta-G solvation = -3340.517817 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79799 -39.14675 -37.33750 -36.07476 -34.83724 -33.65064 -32.08592 -28.02974 -27.19196 -26.56847 -26.52054 -24.38041 -22.84175 -22.68204 -21.46089 -19.91175 -18.77737 -17.73482 -16.47786 -16.33050 -16.12608 -15.80110 -15.19188 -15.02385 -14.58252 -14.51086 -14.14822 -13.48589 -13.30115 -13.10694 -13.01248 -12.77049 -12.58339 -12.17913 -12.06581 -11.89594 -11.35675 -11.18117 -11.01074 -10.89580 -10.85364 -10.64039 -10.43163 -10.31108 -10.26650 -9.89724 -9.78506 -9.43196 -9.18860 -8.95298 -8.82853 -8.36601 -6.00886 -4.02249 2.18751 2.49505 2.81618 3.09152 3.31942 3.37193 3.38897 3.61528 4.36339 4.44419 4.50166 4.55128 4.68162 4.94562 5.21044 5.29760 5.34582 5.38184 5.48188 5.51266 5.56883 5.58650 5.73699 5.81747 6.06698 6.16091 6.19606 6.22816 6.36370 6.49316 6.62344 6.71307 7.04428 7.05647 7.09931 7.12966 7.60015 7.62733 7.73953 7.87891 7.97480 8.24049 8.39712 9.02190 9.60987 11.10523 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.003684 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.690282 B = 7598.586141 C = 7914.611984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.727 5.727 3 C 0.558 3.442 4 O -0.528 6.528 5 C -0.200 4.200 6 C 0.549 3.451 7 O -0.535 6.535 8 N -0.710 5.710 9 C 0.127 3.873 10 C -0.073 4.073 11 C -0.128 4.128 12 C -0.128 4.128 13 C 0.037 3.963 14 C -0.512 4.512 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.127 4.127 23 C -0.128 4.128 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.407 0.593 28 H 0.402 0.598 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.448 0.468 18.706 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.379 5.379 3 C 0.342 3.658 4 O -0.403 6.403 5 C -0.207 4.207 6 C 0.332 3.668 7 O -0.412 6.412 8 N -0.361 5.361 9 C 0.004 3.996 10 C -0.073 4.073 11 C -0.185 4.185 12 C -0.185 4.185 13 C 0.000 4.000 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.165 4.165 23 C -0.166 4.166 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.241 0.759 28 H 0.238 0.762 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.312 0.401 18.608 20.812 hybrid contribution -0.206 0.371 -1.116 1.194 sum -9.519 0.773 17.492 19.929 Atomic orbital electron populations 1.21592 0.79054 1.02562 1.02485 1.45744 1.07937 1.08812 1.75376 1.19139 0.86995 0.83823 0.75817 1.90726 1.69468 1.31488 1.48643 1.21514 0.92863 1.09691 0.96584 1.18997 0.81052 0.83902 0.82807 1.90715 1.42916 1.23580 1.83949 1.46203 1.46149 1.33773 1.09940 1.21714 0.94500 0.98110 0.85230 1.20916 0.97078 0.94928 0.94375 1.21765 0.94722 1.01560 1.00434 1.21770 1.00035 0.96251 1.00485 1.19082 0.94159 0.96216 0.90564 1.21145 1.25283 1.14024 0.94591 0.92293 1.25004 0.95292 0.95245 0.98870 1.69951 1.28283 1.27877 1.27322 0.86708 0.78165 0.80582 0.82840 1.20296 1.21384 1.20322 1.23090 1.02104 0.91299 0.99977 1.23069 1.02983 0.99567 0.90937 0.91844 0.90376 0.92134 0.75868 0.76172 0.91565 0.91577 0.95283 0.91314 0.93398 0.93314 0.91337 0.95138 0.96319 0.96349 0.92972 0.87172 0.86875 0.87633 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.71 59.85 0.64 1.32 16 2 N -0.73 -7.10 5.71 -67.08 -0.38 -7.49 16 3 C 0.56 6.84 7.06 -10.98 -0.08 6.77 16 4 O -0.53 -7.94 16.72 5.56 0.09 -7.85 16 5 C -0.20 -2.33 2.28 -156.81 -0.36 -2.69 16 6 C 0.55 8.01 7.07 -10.98 -0.08 7.93 16 7 O -0.53 -9.33 16.71 5.56 0.09 -9.23 16 8 N -0.71 -10.61 4.96 -60.29 -0.30 -10.91 16 9 C 0.13 2.22 4.57 -4.04 -0.02 2.20 16 10 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 11 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 12 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 13 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 14 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 15 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.13 -1.24 9.76 -26.69 -0.26 -1.50 16 23 C -0.13 -1.17 9.76 -26.69 -0.26 -1.43 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.41 3.48 8.83 -40.82 -0.36 3.12 16 28 H 0.40 5.71 6.17 -40.82 -0.25 5.46 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 32 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 36 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.11 1.05 8.00 -51.93 -0.42 0.64 16 42 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.12 1.08 8.00 -51.93 -0.42 0.67 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -32.00 354.73 -6.73 -38.73 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.93 Total: 5.23 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.37 Total: -4.42 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.05 Total: -43.98 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.19 Total: -17.08 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.00 -6.73 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359763068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.012 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds