Wall clock time and date at job start Tue Mar 31 2020 01:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46557 * 2 1 4 4 C 1.50701 * 109.47105 * 240.00549 * 2 1 3 5 5 O 1.21285 * 119.99213 * 257.50500 * 4 2 1 6 6 N 1.34771 * 120.00308 * 77.50257 * 4 2 1 7 7 C 1.46968 * 120.59245 * 174.23505 * 6 4 2 8 8 C 1.53815 * 108.39239 * 124.76410 * 7 6 4 9 9 N 1.46966 * 108.58208 * 49.63879 * 8 7 6 10 10 C 1.36936 * 120.59205 * 124.62555 * 9 8 7 11 11 H 1.08007 * 119.99604 * 214.06256 * 10 9 8 12 12 C 1.38812 * 120.00204 * 34.05931 * 10 9 8 13 13 N 1.31619 * 119.99863 * 7.30523 * 12 10 9 14 14 Si 1.86798 * 119.99916 * 187.29861 * 12 10 9 15 15 H 1.48504 * 109.47200 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46762 * 120.00400 * 14 12 10 17 17 H 1.48493 * 109.47274 * 240.00484 * 14 12 10 18 18 C 1.46962 * 118.81088 * 304.64778 * 9 8 7 19 19 C 1.46962 * 120.59457 * 354.52573 * 6 4 2 20 20 C 1.52997 * 109.47198 * 119.99734 * 2 1 3 21 21 C 1.53775 * 113.61624 * 282.78169 * 20 2 1 22 22 C 1.53963 * 87.01754 * 220.04494 * 21 20 2 23 23 C 1.53775 * 113.61463 * 185.16885 * 20 2 1 24 24 H 1.08998 * 109.47272 * 65.14803 * 1 2 3 25 25 H 1.08998 * 109.47181 * 185.14615 * 1 2 3 26 26 H 1.09003 * 109.46977 * 305.15069 * 1 2 3 27 27 H 0.96703 * 113.99360 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.61182 * 244.54201 * 7 6 4 29 29 H 1.08993 * 109.60740 * 5.05710 * 7 6 4 30 30 H 1.08997 * 109.74199 * 289.84492 * 8 7 6 31 31 H 1.09004 * 109.67124 * 169.39276 * 8 7 6 32 32 H 0.97004 * 119.99586 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.61061 * 295.48047 * 18 9 8 34 34 H 1.09000 * 109.75124 * 175.05312 * 18 9 8 35 35 H 1.09001 * 109.61127 * 354.93788 * 19 6 4 36 36 H 1.08997 * 109.61718 * 115.28297 * 19 6 4 37 37 H 1.09003 * 112.84319 * 53.97693 * 20 2 1 38 38 H 1.08998 * 113.61518 * 334.56455 * 21 20 2 39 39 H 1.09001 * 113.61830 * 105.47272 * 21 20 2 40 40 H 1.08996 * 113.53540 * 270.80764 * 22 21 20 41 41 H 1.09007 * 113.66149 * 139.93112 * 22 21 20 42 42 H 1.09005 * 113.61744 * 254.53371 * 23 20 2 43 43 H 1.08998 * 113.61621 * 25.35429 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.4487 -1.8464 -1.1473 6 7 2.0189 -0.0832 -2.4234 7 6 2.6202 -0.7139 -3.6069 8 6 1.5567 -0.7767 -4.7164 9 7 0.9460 0.5528 -4.8556 10 6 0.9332 1.1904 -6.0674 11 1 1.0188 2.2661 -6.1125 12 6 0.8103 0.4542 -7.2378 13 7 0.5621 -0.8371 -7.1799 14 14 0.9968 1.2962 -8.8947 15 1 1.2707 2.7410 -8.6878 16 1 2.1249 0.6805 -9.6386 17 1 -0.2565 1.1365 -9.6750 18 6 0.3499 1.1860 -3.6709 19 6 1.4084 1.2464 -2.5626 20 6 2.0401 -0.7212 1.2492 21 6 1.9515 0.1265 2.5292 22 6 3.3235 -0.4566 2.9140 23 6 3.5684 -0.6677 1.4106 24 1 -0.3634 0.4319 -0.9325 25 1 -0.3633 -1.0235 0.0922 26 1 -0.3633 0.5917 0.8403 27 1 2.9703 1.4237 0.0004 28 1 3.4705 -0.1217 -3.9447 29 1 2.9497 -1.7221 -3.3563 30 1 0.7905 -1.5052 -4.4512 31 1 2.0250 -1.0647 -5.6576 32 1 0.4758 -1.3515 -7.9978 33 1 -0.5022 0.5972 -3.3312 34 1 0.0216 2.1954 -3.9186 35 1 0.9374 1.5329 -1.6222 36 1 2.1750 1.9755 -2.8248 37 1 1.6241 -1.7227 1.3591 38 1 1.9699 1.2004 2.3438 39 1 1.1451 -0.1749 3.1977 40 1 3.2583 -1.3854 3.4805 41 1 3.9963 0.2711 3.3680 42 1 4.0653 -1.6094 1.1772 43 1 4.0299 0.1879 0.9176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362805166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:42 Heat of formation + Delta-G solvation = -32.221302 kcal Electronic energy + Delta-G solvation = -23966.135638 eV Core-core repulsion = 20627.071208 eV Total energy + Delta-G solvation = -3339.064430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75580 -38.53858 -36.65341 -36.05393 -33.72809 -31.57319 -31.13789 -30.00334 -27.02436 -26.09504 -25.47385 -24.00927 -22.98283 -22.18254 -20.43924 -19.36643 -18.89692 -17.85815 -16.60226 -16.25362 -15.63486 -15.26230 -14.99855 -14.78061 -13.96479 -13.77694 -13.67770 -13.52342 -13.23004 -13.04307 -12.67000 -12.44605 -12.21623 -12.19545 -12.06779 -11.79019 -11.56387 -11.24094 -11.05227 -10.80056 -10.66239 -10.64004 -10.48995 -10.41966 -10.20988 -10.03556 -10.00197 -9.79791 -8.94609 -8.56780 -8.19202 -6.59958 -5.83132 -3.36819 2.89032 3.33425 3.39845 3.41807 3.43832 4.07820 4.39705 4.45213 4.51656 4.60370 4.71636 4.93991 5.10731 5.26476 5.35657 5.41728 5.54614 5.64799 5.65844 5.72899 5.77363 5.80845 5.88003 5.88953 5.96382 6.05414 6.10939 6.17839 6.20498 6.34998 6.40860 6.46379 6.56349 6.77047 6.93704 7.29344 7.38901 7.61339 7.73439 7.96632 8.42561 8.55890 9.15481 9.75247 10.35248 11.23444 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040910 B = 0.004215 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.267461 B = 6640.972933 C = 6859.361915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.130 3.870 3 O -0.541 6.541 4 C 0.484 3.516 5 O -0.550 6.550 6 N -0.585 5.585 7 C 0.082 3.918 8 C 0.161 3.839 9 N -0.591 5.591 10 C -0.257 4.257 11 H 0.065 0.935 12 C 0.007 3.993 13 N -0.903 5.903 14 Si 0.906 3.094 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.289 1.289 18 C 0.129 3.871 19 C 0.081 3.919 20 C -0.116 4.116 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.134 4.134 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.375 0.625 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.022 0.978 31 H 0.099 0.901 32 H 0.255 0.745 33 H 0.020 0.980 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 3.002 17.414 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.086 3.914 3 O -0.349 6.349 4 C 0.270 3.730 5 O -0.429 6.429 6 N -0.317 5.317 7 C -0.042 4.042 8 C 0.035 3.965 9 N -0.314 5.314 10 C -0.387 4.387 11 H 0.083 0.917 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.736 3.264 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.215 1.215 18 C 0.001 3.999 19 C -0.043 4.043 20 C -0.135 4.135 21 C -0.168 4.168 22 C -0.179 4.179 23 C -0.171 4.171 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.224 0.776 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.812 2.436 17.269 17.665 hybrid contribution 0.640 0.189 -1.090 1.278 sum 3.452 2.625 16.179 16.750 Atomic orbital electron populations 1.21862 0.90827 1.03202 1.03948 1.21234 0.96245 0.82179 0.91708 1.86568 1.26951 1.24842 1.96505 1.21249 0.79472 0.87017 0.85235 1.90643 1.48319 1.18043 1.85924 1.48101 1.55950 1.19334 1.08299 1.22639 0.97669 0.97652 0.86203 1.21247 0.92356 0.86766 0.96126 1.43930 1.64764 1.17848 1.04895 1.19221 1.45047 0.91480 0.82959 0.91703 1.25278 0.99266 0.96099 0.98532 1.69949 1.51812 1.06024 1.26919 0.86167 0.77357 0.78972 0.83931 1.20168 1.21524 1.21549 1.21350 0.92867 0.97617 0.88022 1.22698 0.97397 0.82839 1.01337 1.22972 0.96905 1.00158 0.93504 1.22975 0.97229 1.00512 0.96134 1.22825 0.97614 1.01028 0.96426 1.22845 0.95954 1.02177 0.96126 0.90730 0.90766 0.90763 0.77589 0.92328 0.90401 0.95976 0.88286 0.93476 0.96185 0.91655 0.88109 0.92169 0.88012 0.89033 0.91648 0.90358 0.91573 0.90891 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.41 37.16 0.31 -1.43 16 2 C 0.13 1.69 0.52 -91.77 -0.05 1.64 16 3 O -0.54 -6.29 8.92 -35.23 -0.31 -6.61 16 4 C 0.48 8.31 6.33 -10.99 -0.07 8.24 16 5 O -0.55 -11.03 15.27 5.55 0.08 -10.94 16 6 N -0.59 -10.69 2.94 -172.22 -0.51 -11.20 16 7 C 0.08 1.68 6.63 -3.36 -0.02 1.66 16 8 C 0.16 3.92 5.46 -3.36 -0.02 3.90 16 9 N -0.59 -14.65 2.95 -171.76 -0.51 -15.16 16 10 C -0.26 -6.92 9.56 -15.06 -0.14 -7.06 16 11 H 0.07 1.71 7.84 -52.48 -0.41 1.29 16 12 C 0.01 0.20 5.11 -17.43 -0.09 0.11 16 13 N -0.90 -25.95 11.02 55.49 0.61 -25.34 16 14 Si 0.91 21.32 29.56 -169.99 -5.02 16.30 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.13 2.63 6.67 -3.60 -0.02 2.61 16 19 C 0.08 1.38 5.16 -3.60 -0.02 1.36 16 20 C -0.12 -1.35 2.44 -89.82 -0.22 -1.56 16 21 C -0.13 -1.22 7.44 -25.83 -0.19 -1.41 16 22 C -0.14 -1.26 8.09 -25.82 -0.21 -1.47 16 23 C -0.13 -1.46 6.85 -25.92 -0.18 -1.63 16 24 H 0.07 1.01 6.29 -51.93 -0.33 0.68 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.37 3.68 7.21 45.56 0.33 4.00 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.60 6.99 -51.93 -0.36 1.24 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 2.65 6.10 -51.93 -0.32 2.33 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 1.27 7.94 -51.93 -0.41 0.86 16 35 H 0.10 1.49 3.68 -51.93 -0.19 1.30 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.09 0.85 7.14 -51.93 -0.37 0.48 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.74 6.42 -51.93 -0.33 0.41 16 LS Contribution 328.14 15.07 4.94 4.94 Total: -1.00 -30.56 328.14 -7.81 -38.37 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.18 Total: 4.68 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -0.92 Total: 4.96 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.40 Total: -51.70 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.23 Total: -17.55 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.56 -7.81 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362805166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.145 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds