Wall clock time and date at job start Tue Mar 31 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42893 * 109.47191 * 2 1 4 4 C 1.50703 * 109.47114 * 120.00214 * 2 1 3 5 5 O 1.21280 * 120.00171 * 101.57128 * 4 2 1 6 6 N 1.34780 * 119.99696 * 281.57404 * 4 2 1 7 7 C 1.46964 * 120.59350 * 5.05480 * 6 4 2 8 8 C 1.53814 * 108.39776 * 124.75745 * 7 6 4 9 9 N 1.46965 * 108.57780 * 49.63743 * 8 7 6 10 10 C 1.36939 * 120.59648 * 124.67239 * 9 8 7 11 11 H 1.07998 * 119.99734 * 208.15751 * 10 9 8 12 12 C 1.38812 * 119.99832 * 28.15047 * 10 9 8 13 13 N 1.31616 * 120.00107 * 16.24145 * 12 10 9 14 14 Si 1.86797 * 119.99953 * 196.23685 * 12 10 9 15 15 H 1.48502 * 109.47163 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47450 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47126 * 240.00617 * 14 12 10 18 18 C 1.46966 * 118.81085 * 304.64552 * 9 8 7 19 19 C 1.46959 * 120.58978 * 185.32937 * 6 4 2 20 20 C 1.52999 * 109.46673 * 239.99770 * 2 1 3 21 21 C 1.53791 * 113.61097 * 159.13829 * 20 2 1 22 22 C 1.53952 * 87.01907 * 220.05084 * 21 20 2 23 23 C 1.53779 * 87.11374 * 25.36217 * 22 21 20 24 24 H 1.09000 * 109.46839 * 59.99743 * 1 2 3 25 25 H 1.08994 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46614 * 300.00265 * 1 2 3 27 27 H 0.96698 * 114.00098 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.61087 * 244.54121 * 7 6 4 29 29 H 1.09004 * 109.61110 * 5.05161 * 7 6 4 30 30 H 1.08997 * 109.73990 * 289.84499 * 8 7 6 31 31 H 1.09001 * 109.53009 * 169.30251 * 8 7 6 32 32 H 0.96999 * 120.00219 * 180.02562 * 13 12 10 33 33 H 1.09008 * 109.60942 * 295.48323 * 18 9 8 34 34 H 1.09007 * 109.75199 * 175.05769 * 18 9 8 35 35 H 1.08998 * 109.61567 * 354.95702 * 19 6 4 36 36 H 1.09009 * 109.60548 * 115.46065 * 19 6 4 37 37 H 1.08998 * 112.85377 * 290.33465 * 20 2 1 38 38 H 1.08999 * 113.61209 * 334.56866 * 21 20 2 39 39 H 1.09000 * 113.61328 * 105.47031 * 21 20 2 40 40 H 1.09007 * 113.53671 * 270.81041 * 22 21 20 41 41 H 1.09001 * 113.74713 * 139.94525 * 22 21 20 42 42 H 1.09002 * 113.61887 * 220.09129 * 23 22 21 43 43 H 1.09000 * 113.61307 * 89.19126 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.4332 -1.8523 1.1503 6 7 2.0362 -0.0769 2.4200 7 6 1.4524 1.2651 2.5546 8 6 0.3950 1.2248 3.6709 9 7 0.9885 0.5886 4.8553 10 6 0.9924 1.2323 6.0640 11 1 1.7696 1.0237 6.7843 12 6 -0.0026 2.1528 6.3632 13 7 -1.1088 2.1812 5.6507 14 14 0.2285 3.3513 7.7773 15 1 1.5488 3.1158 8.4150 16 1 0.1696 4.7426 7.2617 17 1 -0.8487 3.1485 8.7791 18 6 1.5773 -0.7511 4.7194 19 6 2.6296 -0.7132 3.6044 20 6 2.0399 -0.7213 -1.2492 21 6 3.4867 -0.3577 -1.6231 22 6 3.0233 -0.3619 -3.0912 23 6 1.6121 -0.0509 -2.5654 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 2.9704 1.4236 -0.0004 28 1 2.2339 1.9798 2.8128 29 1 0.9834 1.5560 1.6146 30 1 -0.4683 0.6478 3.3395 31 1 0.0864 2.2408 3.9173 32 1 -1.8039 2.8247 5.8596 33 1 0.7981 -1.4689 4.4628 34 1 2.0489 -1.0431 5.6578 35 1 2.9383 -1.7291 3.3579 36 1 3.4930 -0.1361 3.9357 37 1 1.8519 -1.7947 -1.2247 38 1 3.7963 0.6244 -1.2658 39 1 4.2080 -1.1409 -1.3896 40 1 3.1055 -1.3374 -3.5708 41 1 3.4533 0.4414 -3.6895 42 1 0.8221 -0.5868 -3.0917 43 1 1.4082 1.0153 -2.4663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362805167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:44 Heat of formation + Delta-G solvation = -29.736052 kcal Electronic energy + Delta-G solvation = -24009.174980 eV Core-core repulsion = 20670.218319 eV Total energy + Delta-G solvation = -3338.956662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73963 -38.59058 -36.68814 -36.02241 -33.73124 -31.68906 -31.00931 -29.99661 -27.06072 -26.15766 -25.37185 -24.05538 -22.95708 -22.24861 -20.45111 -19.30222 -18.90177 -17.86987 -16.69353 -16.12596 -15.72374 -15.22422 -15.03232 -14.71869 -14.03149 -13.77347 -13.71221 -13.52512 -13.28494 -13.05607 -12.57890 -12.43199 -12.21475 -12.17480 -11.92722 -11.72920 -11.57902 -11.37298 -11.02622 -10.81762 -10.68349 -10.62722 -10.49382 -10.40740 -10.20307 -10.08661 -9.89093 -9.81285 -8.93917 -8.58498 -8.21113 -6.69450 -5.84371 -3.29364 2.87240 3.33675 3.39632 3.42267 3.44510 4.13253 4.40847 4.45517 4.51248 4.61806 4.70675 4.92133 5.12980 5.31330 5.36444 5.41456 5.54634 5.64840 5.69415 5.76738 5.81518 5.84092 5.86891 5.89647 5.93364 6.02198 6.12219 6.18417 6.20072 6.34641 6.42619 6.47589 6.48873 6.78483 6.96353 7.25197 7.44970 7.51164 7.72450 7.95697 8.37120 8.53006 9.13406 9.75728 10.32731 11.22969 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032907 B = 0.004494 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.687794 B = 6229.133055 C = 6575.225955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.132 3.868 3 O -0.541 6.541 4 C 0.485 3.515 5 O -0.556 6.556 6 N -0.585 5.585 7 C 0.070 3.930 8 C 0.156 3.844 9 N -0.592 5.592 10 C -0.254 4.254 11 H 0.067 0.933 12 C 0.003 3.997 13 N -0.903 5.903 14 Si 0.904 3.096 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.290 1.290 18 C 0.133 3.867 19 C 0.092 3.908 20 C -0.119 4.119 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.130 4.130 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.374 0.626 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.021 0.979 31 H 0.101 0.899 32 H 0.254 0.746 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 -2.361 -14.938 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.088 3.912 3 O -0.348 6.348 4 C 0.272 3.728 5 O -0.436 6.436 6 N -0.316 5.316 7 C -0.053 4.053 8 C 0.029 3.971 9 N -0.315 5.315 10 C -0.384 4.384 11 H 0.085 0.915 12 C -0.196 4.196 13 N -0.547 5.547 14 Si 0.734 3.266 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.217 1.217 18 C 0.005 3.995 19 C -0.033 4.033 20 C -0.138 4.138 21 C -0.177 4.177 22 C -0.176 4.176 23 C -0.168 4.168 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.224 0.776 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.039 0.961 31 H 0.119 0.881 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.561 -2.706 -14.901 16.134 hybrid contribution 0.605 0.518 0.907 1.207 sum 6.166 -2.188 -13.995 15.449 Atomic orbital electron populations 1.21859 0.90605 1.03211 1.04171 1.21200 0.96387 0.82162 0.91466 1.86603 1.26962 1.24821 1.96457 1.21307 0.79152 0.87007 0.85379 1.90625 1.49121 1.17909 1.85957 1.48122 1.56701 1.18779 1.08011 1.23136 0.98224 0.81530 1.02400 1.21335 0.90919 1.00668 0.84160 1.44017 1.68353 1.12889 1.06224 1.19263 1.06191 1.19231 0.93672 0.91486 1.25064 0.94555 1.01532 0.98420 1.70007 1.05780 1.37030 1.41916 0.86197 0.77579 0.81052 0.81782 1.20242 1.21477 1.21687 1.21267 0.93911 0.88639 0.95640 1.22222 0.96879 0.97943 0.86217 1.23025 0.96574 1.01116 0.93100 1.22950 0.96568 1.01600 0.96565 1.22775 0.97073 1.01670 0.96115 1.22924 0.96761 1.01541 0.95539 0.90755 0.90839 0.90409 0.77564 0.92344 0.87950 0.96126 0.88121 0.93554 0.95997 0.91665 0.90215 0.92037 0.87626 0.90286 0.91205 0.90367 0.91516 0.91579 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.37 37.16 0.31 -1.57 16 2 C 0.13 1.79 0.53 -91.77 -0.05 1.74 16 3 O -0.54 -6.81 9.30 -35.23 -0.33 -7.14 16 4 C 0.49 8.36 6.60 -10.98 -0.07 8.29 16 5 O -0.56 -10.94 15.31 5.56 0.09 -10.86 16 6 N -0.58 -10.68 2.94 -172.21 -0.51 -11.19 16 7 C 0.07 1.31 5.28 -3.37 -0.02 1.29 16 8 C 0.16 3.60 5.52 -3.36 -0.02 3.58 16 9 N -0.59 -14.63 2.97 -171.76 -0.51 -15.14 16 10 C -0.25 -6.83 9.59 -15.06 -0.14 -6.97 16 11 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 12 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 13 N -0.90 -25.54 11.11 55.49 0.62 -24.92 16 14 Si 0.90 21.22 29.58 -169.99 -5.03 16.19 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.13 2.83 6.67 -3.60 -0.02 2.81 16 19 C 0.09 1.72 6.60 -3.60 -0.02 1.70 16 20 C -0.12 -1.41 2.62 -89.80 -0.23 -1.65 16 21 C -0.14 -1.46 7.41 -25.82 -0.19 -1.65 16 22 C -0.14 -1.24 8.09 -25.83 -0.21 -1.45 16 23 C -0.13 -1.26 6.64 -25.92 -0.17 -1.44 16 24 H 0.07 0.84 7.50 -51.93 -0.39 0.46 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.17 6.36 -51.93 -0.33 0.84 16 27 H 0.37 3.96 6.81 45.56 0.31 4.27 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.72 3.62 -51.93 -0.19 1.54 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 32 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.06 1.33 7.94 -51.93 -0.41 0.92 16 35 H 0.08 1.47 6.99 -51.93 -0.36 1.10 16 36 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 37 H 0.11 1.40 7.70 -51.93 -0.40 1.00 16 38 H 0.08 0.75 5.92 -51.93 -0.31 0.44 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.89 7.72 -51.93 -0.40 0.49 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -30.25 327.35 -7.81 -38.06 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.14 Total: 5.39 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.93 Total: 4.67 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.40 Total: -51.25 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.24 Total: -18.00 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.25 -7.81 -38.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362805167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.324 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds