Wall clock time and date at job start Tue Mar 31 2020 02:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47013 * 2 1 4 4 C 1.53005 * 109.47514 * 239.99898 * 2 1 3 5 5 C 1.50696 * 109.46811 * 59.99627 * 4 2 1 6 6 O 1.21287 * 120.00108 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00032 * 179.97438 * 5 4 2 8 8 C 1.46964 * 120.59084 * 359.72809 * 7 5 4 9 9 C 1.53809 * 108.40288 * 124.75572 * 8 7 5 10 10 N 1.46970 * 108.57649 * 49.63161 * 9 8 7 11 11 C 1.36940 * 120.59239 * 124.62924 * 10 9 8 12 12 H 1.07992 * 120.00045 * 208.17995 * 11 10 9 13 13 C 1.38819 * 119.99793 * 28.17285 * 11 10 9 14 14 N 1.31613 * 120.00044 * 17.57414 * 13 11 10 15 15 Si 1.86797 * 119.99810 * 197.56856 * 13 11 10 16 16 H 1.48494 * 109.47349 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46712 * 120.00532 * 15 13 11 18 18 H 1.48497 * 109.47047 * 240.00193 * 15 13 11 19 19 C 1.46967 * 118.81449 * 304.65079 * 10 9 8 20 20 C 1.46961 * 120.59765 * 180.02562 * 7 5 4 21 21 C 1.53000 * 109.47320 * 119.99895 * 2 1 3 22 22 C 1.53005 * 117.49556 * 13.62207 * 21 2 1 23 23 C 1.52997 * 59.99860 * 252.50961 * 22 21 2 24 24 H 1.09003 * 109.46535 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47143 * 299.99878 * 1 2 3 26 26 H 1.08997 * 109.47034 * 60.00270 * 1 2 3 27 27 H 0.96700 * 114.00308 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47050 * 180.02562 * 4 2 1 29 29 H 1.08996 * 109.46921 * 300.00184 * 4 2 1 30 30 H 1.09004 * 109.60791 * 244.53999 * 8 7 5 31 31 H 1.09000 * 109.61283 * 5.04412 * 8 7 5 32 32 H 1.09000 * 109.74013 * 289.84748 * 9 8 7 33 33 H 1.08998 * 109.53655 * 169.30037 * 9 8 7 34 34 H 0.97001 * 120.00271 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.60546 * 295.48045 * 19 10 9 36 36 H 1.08999 * 109.74690 * 175.05513 * 19 10 9 37 37 H 1.08998 * 109.60794 * 354.95011 * 20 7 5 38 38 H 1.08993 * 109.60939 * 115.28847 * 20 7 5 39 39 H 1.09001 * 115.55753 * 159.33040 * 21 2 1 40 40 H 1.08998 * 117.49828 * 0.02562 * 22 21 2 41 41 H 1.09004 * 117.49839 * 145.02157 * 22 21 2 42 42 H 1.09003 * 117.50000 * 252.50324 * 23 22 21 43 43 H 1.09005 * 117.49741 * 107.49256 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 8 0.8407 0.9754 -2.3684 7 7 1.8638 -0.4711 -3.7038 8 6 2.7133 -1.6609 -3.8537 9 6 1.9678 -2.6827 -4.7289 10 7 1.4851 -2.0000 -5.9376 11 6 1.8171 -2.4671 -7.1813 12 1 1.8756 -1.7848 -8.0164 13 6 2.0785 -3.8175 -7.3686 14 7 1.6836 -4.6949 -6.4707 15 14 2.9907 -4.3892 -8.8952 16 1 3.3232 -3.2155 -9.7418 17 1 4.2424 -5.0802 -8.4940 18 1 2.1321 -5.3265 -9.6629 19 6 0.6401 -0.8070 -5.7876 20 6 1.3816 0.2118 -4.9125 21 6 2.0401 -0.7212 1.2492 22 6 1.0319 -1.5509 2.0470 23 6 1.5416 -0.2213 2.6066 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.9703 1.4237 0.0004 28 1 3.1301 -0.7216 -1.2489 29 1 1.6768 -1.7489 -1.2492 30 1 3.6524 -1.3819 -4.3318 31 1 2.9134 -2.0934 -2.8735 32 1 1.1214 -3.0918 -4.1772 33 1 2.6478 -3.4869 -5.0098 34 1 1.8659 -5.6386 -6.6017 35 1 -0.3007 -1.0826 -5.3113 36 1 0.4406 -0.3715 -6.7667 37 1 0.7018 1.0162 -4.6316 38 1 2.2279 0.6233 -5.4624 39 1 3.0642 -1.0901 1.1940 40 1 0.0056 -1.5832 1.6816 41 1 1.3928 -2.4660 2.5166 42 1 2.2377 -0.2615 3.4445 43 1 0.8503 0.6216 2.6096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408000242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:33 Heat of formation + Delta-G solvation = -46.450952 kcal Electronic energy + Delta-G solvation = -23376.950561 eV Core-core repulsion = 20037.269087 eV Total energy + Delta-G solvation = -3339.681474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38927 -39.75347 -38.25994 -36.30457 -35.55374 -33.46735 -32.56770 -31.68903 -29.42596 -28.17734 -25.65371 -24.90875 -24.15584 -23.19633 -22.09339 -20.57759 -20.08745 -18.73519 -17.93260 -17.64350 -16.85355 -16.76526 -16.57626 -16.09208 -15.65167 -15.46775 -15.16482 -15.05359 -14.87245 -14.31602 -14.02607 -13.90814 -13.37120 -13.28130 -13.20534 -12.75981 -12.68826 -12.63382 -12.46476 -12.20018 -12.07099 -12.02294 -11.87939 -11.72453 -11.63585 -11.36700 -11.04770 -10.85994 -10.62099 -10.39804 -9.74425 -8.64955 -7.89111 -5.37020 1.47658 1.50841 1.60754 1.74178 2.09313 2.51467 2.83180 3.25380 3.44041 3.58047 3.61855 3.66168 3.99431 4.00230 4.18267 4.21928 4.25157 4.31801 4.39871 4.40328 4.58914 4.60259 4.67039 4.75570 4.79241 4.83091 4.85186 4.95827 5.01658 5.06806 5.08594 5.24261 5.29199 5.32026 5.46433 5.55531 5.62055 5.70212 6.35404 6.58608 6.97718 7.11005 7.31489 7.78385 8.31951 9.15998 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030508 B = 0.003973 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.579439 B = 7046.659403 C = 7542.493970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.184 3.816 3 O -0.560 6.560 4 C -0.159 4.159 5 C 0.508 3.492 6 O -0.566 6.566 7 N -0.607 5.607 8 C 0.096 3.904 9 C 0.162 3.838 10 N -0.609 5.609 11 C -0.267 4.267 12 H 0.067 0.933 13 C -0.044 4.044 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.269 1.269 17 H -0.286 1.286 18 H -0.295 1.295 19 C 0.133 3.867 20 C 0.107 3.893 21 C -0.187 4.187 22 C -0.177 4.177 23 C -0.165 4.165 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.381 0.619 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.000 1.000 33 H 0.075 0.925 34 H 0.252 0.748 35 H 0.007 0.993 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 5.716 15.715 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.143 3.857 3 O -0.367 6.367 4 C -0.199 4.199 5 C 0.298 3.702 6 O -0.446 6.446 7 N -0.340 5.340 8 C -0.028 4.028 9 C 0.036 3.964 10 N -0.333 5.333 11 C -0.397 4.397 12 H 0.085 0.915 13 C -0.239 4.239 14 N -0.577 5.577 15 Si 0.796 3.204 16 H -0.193 1.193 17 H -0.212 1.212 18 H -0.222 1.222 19 C 0.006 3.994 20 C -0.017 4.017 21 C -0.206 4.206 22 C -0.214 4.214 23 C -0.202 4.202 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.229 0.771 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.018 0.982 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.025 0.975 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.267 6.201 15.742 17.232 hybrid contribution 0.667 -0.789 -1.131 1.531 sum 3.934 5.412 14.612 16.071 Atomic orbital electron populations 1.22068 0.93987 1.02136 1.02920 1.20244 0.94056 0.81302 0.90109 1.86666 1.27066 1.26078 1.96863 1.22460 1.04133 1.01498 0.91784 1.21070 0.79953 0.84322 0.84893 1.90619 1.39548 1.27990 1.86413 1.48191 1.50846 1.29348 1.05629 1.22542 0.93203 0.85461 1.01553 1.21120 0.95926 0.93510 0.85872 1.44263 1.56472 1.29959 1.02560 1.19547 1.41064 0.91244 0.87818 0.91528 1.25760 1.01587 0.95883 1.00713 1.70161 1.48536 1.01093 1.37954 0.85211 0.77965 0.77876 0.79363 1.19327 1.21196 1.22208 1.21342 0.91841 0.88142 0.98035 1.21927 0.98985 0.95130 0.85704 1.22974 1.00449 1.04893 0.92237 1.23194 0.99337 0.95600 1.03226 1.22886 1.03768 0.97648 0.95921 0.90663 0.92234 0.92215 0.77096 0.86175 0.87132 0.91403 0.87358 0.98206 0.90697 0.93847 0.97512 0.91233 0.89948 0.91526 0.85846 0.88525 0.87342 0.87434 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 7.18 71.98 0.52 -3.53 16 2 C 0.18 4.15 0.80 -10.79 -0.01 4.14 16 3 O -0.56 -14.23 11.85 -131.52 -1.56 -15.79 16 4 C -0.16 -3.64 3.29 29.85 0.10 -3.54 16 5 C 0.51 16.48 7.26 87.66 0.64 17.12 16 6 O -0.57 -21.98 12.36 14.41 0.18 -21.80 16 7 N -0.61 -20.90 2.94 -817.10 -2.40 -23.31 16 8 C 0.10 3.19 6.53 86.56 0.57 3.76 16 9 C 0.16 7.24 5.53 86.56 0.48 7.72 16 10 N -0.61 -29.73 2.97 -697.27 -2.07 -31.80 16 11 C -0.27 -14.19 9.58 84.03 0.80 -13.38 16 12 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 13 C -0.04 -2.33 4.90 84.86 0.42 -1.91 16 14 N -0.93 -52.54 11.20 21.65 0.24 -52.30 16 15 Si 0.97 43.03 29.59 68.60 2.03 45.06 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 19 C 0.13 5.64 6.67 86.43 0.58 6.21 16 20 C 0.11 3.92 6.59 86.43 0.57 4.49 16 21 C -0.19 -3.11 5.32 -10.79 -0.06 -3.17 16 22 C -0.18 -2.76 9.65 30.59 0.30 -2.46 16 23 C -0.17 -2.63 9.85 30.59 0.30 -2.33 16 24 H 0.07 1.75 6.74 -2.39 -0.02 1.73 16 25 H 0.06 1.47 6.96 -2.39 -0.02 1.46 16 26 H 0.06 2.01 5.51 -2.39 -0.01 1.99 16 27 H 0.38 6.66 9.05 -74.06 -0.67 5.99 16 28 H 0.12 2.06 7.90 -2.39 -0.02 2.05 16 29 H 0.11 2.38 7.73 -2.39 -0.02 2.36 16 30 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.11 2.75 5.91 -2.39 -0.01 2.74 16 32 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.07 3.72 5.99 -2.39 -0.01 3.71 16 34 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 35 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.07 2.83 7.94 -2.39 -0.02 2.81 16 37 H 0.08 3.01 6.99 -2.39 -0.02 2.99 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 1.63 5.89 -2.39 -0.01 1.62 16 41 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.58 7.29 -2.38 -0.02 1.56 16 Total: -1.00 -67.40 332.49 1.96 -65.44 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.34 Total: 21.37 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.19 Total: 13.11 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -4.23 Total: -107.40 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.38 Total: -37.59 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -67.40 1.96 -65.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408000242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.991 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds