Wall clock time and date at job start Tue Mar 31 2020 01:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.52466 * 2 1 4 4 O 1.21281 * 119.99508 * 234.71509 * 3 2 1 5 5 N 1.34776 * 119.99870 * 54.71548 * 3 2 1 6 6 C 1.46956 * 120.59797 * 4.87612 * 5 3 2 7 7 C 1.53810 * 108.40014 * 124.75687 * 6 5 3 8 8 N 1.46967 * 108.57525 * 49.63821 * 7 6 5 9 9 C 1.36945 * 120.59263 * 124.62832 * 8 7 6 10 10 H 1.07998 * 119.99570 * 208.07623 * 9 8 7 11 11 C 1.38814 * 119.99762 * 28.07384 * 9 8 7 12 12 N 1.31613 * 120.00199 * 14.67481 * 11 9 8 13 13 Si 1.86803 * 119.99579 * 194.67306 * 11 9 8 14 14 H 1.48503 * 109.47107 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47248 * 120.00518 * 13 11 9 16 16 H 1.48502 * 109.46950 * 240.00129 * 13 11 9 17 17 C 1.46960 * 118.81411 * 304.64216 * 8 7 6 18 18 C 1.46967 * 120.58924 * 185.15798 * 5 3 2 19 19 C 1.53181 * 109.51978 * 120.12044 * 2 1 3 20 20 C 1.53183 * 109.03313 * 176.82287 * 19 2 1 21 21 C 1.53093 * 109.21399 * 303.11438 * 20 19 2 22 22 O 1.42900 * 109.41340 * 57.57594 * 21 20 19 23 23 C 1.42909 * 114.09930 * 298.84256 * 22 21 20 24 24 H 1.09008 * 109.46910 * 52.67728 * 1 2 3 25 25 H 1.09000 * 109.47370 * 292.68080 * 1 2 3 26 26 H 1.08996 * 109.47488 * 172.67839 * 1 2 3 27 27 H 1.09010 * 109.61117 * 244.54293 * 6 5 3 28 28 H 1.09002 * 109.61118 * 5.05128 * 6 5 3 29 29 H 1.08995 * 109.73995 * 289.84875 * 7 6 5 30 30 H 1.09000 * 109.67157 * 169.38372 * 7 6 5 31 31 H 0.97000 * 119.99602 * 179.97438 * 12 11 9 32 32 H 1.08991 * 109.61357 * 295.48951 * 17 8 7 33 33 H 1.08995 * 109.60815 * 174.97036 * 17 8 7 34 34 H 1.09007 * 109.61044 * 354.94585 * 18 5 3 35 35 H 1.08995 * 109.61291 * 115.28667 * 18 5 3 36 36 H 1.09005 * 109.54650 * 296.75487 * 19 2 1 37 37 H 1.09005 * 109.54051 * 57.01830 * 19 2 1 38 38 H 1.09004 * 109.52285 * 183.17834 * 20 19 2 39 39 H 1.09001 * 109.51990 * 63.05262 * 20 19 2 40 40 H 1.09000 * 109.48069 * 297.59170 * 21 20 19 41 41 H 1.08999 * 109.47890 * 177.55662 * 21 20 19 42 42 H 1.09002 * 109.47654 * 301.17530 * 23 22 21 43 43 H 1.08994 * 109.49370 * 181.14882 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4204 0.0000 4 8 2.8082 1.7890 -0.8574 5 7 1.6234 2.2808 0.9528 6 6 0.7706 1.8219 2.0581 7 6 1.4566 2.1885 3.3851 8 7 1.8491 3.6039 3.3338 9 6 1.4315 4.4784 4.3014 10 1 1.3124 5.5259 4.0674 11 6 1.1615 4.0183 5.5829 12 7 1.5724 2.8242 5.9537 13 14 0.2148 5.0941 6.7813 14 1 -0.1306 6.3807 6.1250 15 1 -1.0305 4.3983 7.1939 16 1 1.0536 5.3589 7.9778 17 6 2.6974 4.0639 2.2255 18 6 2.0159 3.6962 0.9015 19 6 2.0418 -0.7245 1.2488 20 6 3.5715 -0.7878 1.1979 21 6 4.0043 -1.4817 -0.0963 22 8 3.4695 -0.7738 -1.2165 23 6 2.0416 -0.7243 -1.2479 24 1 -0.3633 0.6231 -0.8173 25 1 -0.3634 0.3963 0.9482 26 1 -0.3634 -1.0192 -0.1310 27 1 -0.2014 2.3119 1.9980 28 1 0.6426 0.7412 1.9970 29 1 2.3417 1.5682 3.5255 30 1 0.7641 2.0306 4.2119 31 1 1.3840 2.5030 6.8494 32 1 3.6709 3.5772 2.2834 33 1 2.8221 5.1451 2.2847 34 1 2.7107 3.8535 0.0764 35 1 1.1312 4.3162 0.7580 36 1 1.7278 -0.1811 2.1401 37 1 1.6366 -1.7361 1.2753 38 1 3.9415 -1.3512 2.0546 39 1 3.9789 0.2229 1.2232 40 1 3.6315 -2.5059 -0.1018 41 1 5.0925 -1.4904 -0.1576 42 1 1.6431 -1.7386 -1.2685 43 1 1.7158 -0.1876 -2.1388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408167080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:30 Heat of formation + Delta-G solvation = -38.080093 kcal Electronic energy + Delta-G solvation = -24512.542515 eV Core-core repulsion = 21173.224029 eV Total energy + Delta-G solvation = -3339.318486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81505 -38.24534 -36.60467 -34.93242 -33.57611 -32.06824 -31.17587 -30.11006 -27.05743 -26.94142 -25.13946 -24.15212 -22.85352 -22.41706 -21.41817 -19.83139 -18.51523 -16.76998 -16.20072 -15.98383 -15.87297 -15.23085 -15.08832 -14.79153 -14.36630 -14.05852 -13.73719 -13.58058 -13.33375 -13.31843 -12.70942 -12.58484 -12.27389 -12.18538 -11.92819 -11.75647 -11.46726 -11.22016 -11.02536 -10.84169 -10.69598 -10.54823 -10.48240 -10.28439 -10.21865 -9.89134 -9.83454 -9.39053 -8.97971 -8.61565 -8.16397 -6.71668 -5.87277 -3.32773 3.10262 3.31172 3.39496 3.41233 3.48600 4.02593 4.41741 4.55342 4.68142 4.79620 4.97439 5.08374 5.22715 5.26335 5.32950 5.40450 5.44767 5.57397 5.63434 5.68813 5.75306 5.80491 5.83568 5.86427 5.97462 5.98630 6.05985 6.15194 6.21683 6.28537 6.34292 6.41008 6.46173 6.79940 6.97342 7.23061 7.33807 7.47770 7.69380 8.00780 8.34214 8.69675 9.10639 9.72598 10.29427 11.19828 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028325 B = 0.005116 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.282862 B = 5471.756690 C = 5683.161614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C 0.523 3.477 4 O -0.541 6.541 5 N -0.596 5.596 6 C 0.058 3.942 7 C 0.156 3.844 8 N -0.591 5.591 9 C -0.251 4.251 10 H 0.068 0.932 11 C 0.001 3.999 12 N -0.905 5.905 13 Si 0.905 3.095 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.290 1.290 17 C 0.132 3.868 18 C 0.096 3.904 19 C -0.125 4.125 20 C -0.157 4.157 21 C 0.060 3.940 22 O -0.363 6.363 23 C 0.091 3.909 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.022 0.978 30 H 0.104 0.896 31 H 0.254 0.746 32 H 0.023 0.977 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -9.247 -9.762 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.119 4.119 3 C 0.310 3.690 4 O -0.419 6.419 5 N -0.328 5.328 6 C -0.065 4.065 7 C 0.029 3.971 8 N -0.314 5.314 9 C -0.380 4.380 10 H 0.086 0.914 11 C -0.197 4.197 12 N -0.550 5.550 13 Si 0.735 3.265 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.217 1.217 17 C 0.005 3.995 18 C -0.028 4.028 19 C -0.162 4.162 20 C -0.194 4.194 21 C -0.017 4.017 22 O -0.281 6.281 23 C 0.014 3.986 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.040 0.960 30 H 0.122 0.878 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.517 -8.999 -10.179 13.671 hybrid contribution -0.700 0.409 1.112 1.376 sum -2.218 -8.590 -9.067 12.685 Atomic orbital electron populations 1.22162 0.92373 1.02662 1.04093 1.21472 0.97459 0.94243 0.98705 1.20157 0.80949 0.86594 0.81251 1.90665 1.34652 1.78184 1.38352 1.47968 1.50524 1.09363 1.24995 1.23372 0.94195 0.99637 0.89303 1.21338 0.97957 0.84851 0.92934 1.43986 1.55901 1.05929 1.25590 1.19283 1.38777 0.91302 0.88662 0.91438 1.25071 1.00704 0.97322 0.96599 1.69975 1.47623 1.18768 1.18654 0.86175 0.79447 0.79899 0.80977 1.20236 1.21511 1.21670 1.21285 0.92719 0.98306 0.87153 1.22155 0.99790 0.80717 1.00160 1.22028 0.96039 1.00781 0.97381 1.22179 0.96058 1.02755 0.98453 1.22569 0.99043 0.93995 0.86107 1.88052 1.19514 1.76021 1.44484 1.22337 0.81719 0.98049 0.96514 0.92057 0.89913 0.91667 0.92134 0.88843 0.96014 0.87839 0.93565 0.95928 0.91695 0.90142 0.92201 0.88771 0.90970 0.90577 0.90814 0.93616 0.89182 0.92988 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.07 37.16 0.30 -1.46 16 2 C -0.12 -1.59 0.50 -155.52 -0.08 -1.67 16 3 C 0.52 9.32 5.29 -10.98 -0.06 9.26 16 4 O -0.54 -11.35 14.70 -12.53 -0.18 -11.54 16 5 N -0.60 -10.86 2.93 -172.21 -0.50 -11.37 16 6 C 0.06 1.03 4.30 -3.37 -0.01 1.02 16 7 C 0.16 3.47 5.34 -3.37 -0.02 3.45 16 8 N -0.59 -14.33 2.97 -171.77 -0.51 -14.84 16 9 C -0.25 -6.62 9.60 -15.05 -0.14 -6.77 16 10 H 0.07 1.76 7.87 -52.49 -0.41 1.35 16 11 C 0.00 0.03 4.98 -17.43 -0.09 -0.06 16 12 N -0.91 -25.05 11.00 55.49 0.61 -24.44 16 13 Si 0.91 20.93 29.58 -169.99 -5.03 15.90 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.13 2.81 6.67 -3.60 -0.02 2.79 16 18 C 0.10 1.81 6.60 -3.59 -0.02 1.79 16 19 C -0.13 -1.63 4.49 -26.54 -0.12 -1.75 16 20 C -0.16 -2.15 5.87 -26.59 -0.16 -2.31 16 21 C 0.06 0.76 6.84 37.21 0.25 1.01 16 22 O -0.36 -5.67 9.70 -53.32 -0.52 -6.19 16 23 C 0.09 1.22 5.09 37.20 0.19 1.41 16 24 H 0.06 0.70 8.13 -51.92 -0.42 0.28 16 25 H 0.08 0.96 4.75 -51.93 -0.25 0.72 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 28 H 0.09 1.40 2.40 -51.93 -0.12 1.27 16 29 H 0.02 0.52 7.95 -51.93 -0.41 0.10 16 30 H 0.10 2.55 5.87 -51.93 -0.30 2.24 16 31 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 34 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.35 4.59 -51.93 -0.24 1.11 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.26 7.40 -51.93 -0.38 0.88 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -30.99 319.44 -7.98 -38.97 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.68 Total: 1.96 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 0.02 Total: 6.72 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.40 Total: -50.65 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.70 Total: -17.72 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.99 -7.98 -38.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408167080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.890 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds