Wall clock time and date at job start Tue Mar 31 2020 01:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.52308 * 2 1 4 4 O 1.21288 * 119.99650 * 242.12122 * 3 2 1 5 5 N 1.34771 * 120.00669 * 62.11574 * 3 2 1 6 6 C 1.46963 * 120.59004 * 354.90164 * 5 3 2 7 7 C 1.53374 * 108.63757 * 124.74892 * 6 5 3 8 8 N 1.46967 * 108.63027 * 49.42431 * 7 6 5 9 9 C 1.36932 * 120.59135 * 124.75967 * 8 7 6 10 10 H 1.08001 * 120.00051 * 332.94926 * 9 8 7 11 11 C 1.38815 * 120.00082 * 152.96092 * 9 8 7 12 12 N 1.31622 * 120.00095 * 160.19373 * 11 9 8 13 13 Si 1.86802 * 120.00021 * 340.19923 * 11 9 8 14 14 H 1.48499 * 109.47103 * 92.17197 * 13 11 9 15 15 H 1.48493 * 109.46868 * 212.17116 * 13 11 9 16 16 H 1.48496 * 109.46787 * 332.17128 * 13 11 9 17 17 C 1.46967 * 118.81280 * 304.76797 * 8 7 6 18 18 C 1.46961 * 120.59984 * 174.87509 * 5 3 2 19 19 C 1.53178 * 109.52256 * 239.86816 * 2 1 3 20 20 C 1.53313 * 108.96453 * 183.11081 * 19 2 1 21 21 C 1.53093 * 109.19663 * 56.94505 * 20 19 2 22 22 O 1.42901 * 109.41182 * 302.38776 * 21 20 19 23 23 C 1.42905 * 114.09724 * 61.16192 * 22 21 20 24 24 H 1.08999 * 109.46649 * 73.11728 * 1 2 3 25 25 H 1.09000 * 109.46938 * 193.11704 * 1 2 3 26 26 H 1.09004 * 109.46633 * 313.12022 * 1 2 3 27 27 H 1.08999 * 109.61150 * 5.00503 * 6 5 3 28 28 H 1.08998 * 109.61086 * 244.49364 * 6 5 3 29 29 H 1.09003 * 109.60802 * 169.16653 * 7 6 5 30 30 H 1.09001 * 109.60639 * 289.68089 * 7 6 5 31 31 H 0.96996 * 120.00166 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.61143 * 295.49155 * 17 8 7 33 33 H 1.08999 * 109.61088 * 174.97449 * 17 8 7 34 34 H 1.09006 * 109.60658 * 354.99648 * 18 5 3 35 35 H 1.08997 * 109.60896 * 115.50174 * 18 5 3 36 36 H 1.08993 * 109.54375 * 302.92037 * 19 2 1 37 37 H 1.09002 * 109.54138 * 63.19002 * 19 2 1 38 38 H 1.09003 * 109.50447 * 297.02628 * 20 19 2 39 39 H 1.09004 * 109.55914 * 176.89599 * 20 19 2 40 40 H 1.08995 * 109.47811 * 182.40791 * 21 20 19 41 41 H 1.08994 * 109.48643 * 62.37661 * 21 20 19 42 42 H 1.08998 * 109.48080 * 178.85496 * 23 22 21 43 43 H 1.08999 * 109.49251 * 58.82310 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 8 2.6992 1.8277 -0.9285 5 7 1.7445 2.2380 1.0316 6 6 0.8479 1.7950 2.1084 7 6 1.5778 1.9490 3.4485 8 7 2.1538 3.2994 3.5169 9 6 1.8600 4.1300 4.5652 10 1 0.9256 4.0203 5.0956 11 6 2.7629 5.1132 4.9459 12 7 2.3550 6.1403 5.6608 13 14 4.5571 4.9787 4.4435 14 1 4.7671 5.6968 3.1608 15 1 5.4124 5.5842 5.4956 16 1 4.9179 3.5481 4.2747 17 6 3.0505 3.7424 2.4401 18 6 2.3204 3.5883 1.1001 19 6 2.0419 -0.7247 -1.2486 20 6 3.5730 -0.7856 -1.1968 21 6 4.0057 -1.4794 0.0975 22 8 3.4696 -0.7722 1.2175 23 6 2.0416 -0.7241 1.2481 24 1 -0.3632 0.2985 -0.9834 25 1 -0.3633 -1.0009 0.2332 26 1 -0.3633 0.7025 0.7502 27 1 0.5810 0.7493 1.9554 28 1 -0.0530 2.4085 2.1100 29 1 0.8721 1.8103 4.2676 30 1 2.3739 1.2077 3.5187 31 1 2.9858 6.8274 5.9265 32 1 3.9514 3.1287 2.4385 33 1 3.3173 4.7881 2.5932 34 1 3.0261 3.7270 0.2810 35 1 1.5244 4.3295 1.0298 36 1 1.6376 -1.7366 -1.2744 37 1 1.7271 -0.1820 -2.1400 38 1 3.9785 0.2259 -1.2211 39 1 3.9450 -1.3478 -2.0534 40 1 5.0938 -1.4872 0.1594 41 1 3.6339 -2.5040 0.1026 42 1 1.7150 -0.1878 2.1390 43 1 1.6439 -1.7387 1.2683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408167082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:32 Heat of formation + Delta-G solvation = -29.833981 kcal Electronic energy + Delta-G solvation = -24639.407012 eV Core-core repulsion = 21300.446104 eV Total energy + Delta-G solvation = -3338.960908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.05175 -38.41551 -37.04338 -34.82765 -34.01498 -32.23731 -31.42118 -30.52938 -27.33878 -27.14163 -25.27105 -24.04771 -23.51347 -22.43695 -21.50497 -20.20372 -18.54765 -17.09493 -16.45487 -16.40248 -15.78191 -15.44593 -15.31207 -14.99278 -14.29642 -14.21618 -14.16246 -14.14811 -13.58489 -13.14036 -12.71690 -12.59408 -12.46979 -12.37991 -12.25718 -12.00598 -11.84067 -11.73359 -11.13725 -11.05080 -10.90266 -10.56580 -10.45538 -10.34640 -10.23509 -9.96715 -9.61829 -9.53244 -9.15864 -8.82890 -8.26680 -6.98781 -5.98877 -3.36204 2.86542 3.27892 3.31803 3.48860 3.52688 3.84778 4.37525 4.49265 4.50192 4.68806 4.81278 4.86678 4.98991 5.09901 5.25512 5.28522 5.31272 5.38757 5.42013 5.46468 5.51058 5.63058 5.64795 5.72517 5.77128 5.83632 5.87320 5.98311 6.04703 6.06889 6.15155 6.23117 6.37196 6.42730 6.52502 6.71210 6.91980 7.14041 7.78389 7.88000 8.27353 8.47421 8.86408 9.66287 10.02641 11.16682 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.005764 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.341040 B = 4856.808296 C = 5077.348191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C 0.532 3.468 4 O -0.550 6.550 5 N -0.594 5.594 6 C 0.068 3.932 7 C 0.131 3.869 8 N -0.604 5.604 9 C -0.263 4.263 10 H 0.088 0.912 11 C 0.025 3.975 12 N -0.907 5.907 13 Si 0.882 3.118 14 H -0.287 1.287 15 H -0.302 1.302 16 H -0.270 1.270 17 C 0.113 3.887 18 C 0.098 3.902 19 C -0.092 4.092 20 C -0.166 4.166 21 C 0.058 3.942 22 O -0.371 6.371 23 C 0.057 3.943 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.033 0.967 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.114 0.886 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 -16.017 -11.790 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.121 4.121 3 C 0.320 3.680 4 O -0.428 6.428 5 N -0.326 5.326 6 C -0.056 4.056 7 C 0.004 3.996 8 N -0.327 5.327 9 C -0.391 4.391 10 H 0.105 0.895 11 C -0.174 4.174 12 N -0.550 5.550 13 Si 0.712 3.288 14 H -0.215 1.215 15 H -0.230 1.230 16 H -0.195 1.195 17 C -0.013 4.013 18 C -0.026 4.026 19 C -0.129 4.129 20 C -0.203 4.203 21 C -0.019 4.019 22 O -0.289 6.289 23 C -0.019 4.019 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.132 0.868 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.532 -15.540 -12.000 19.797 hybrid contribution 0.843 -0.049 -0.404 0.936 sum -1.690 -15.589 -12.405 19.994 Atomic orbital electron populations 1.22177 0.92058 1.03343 1.03789 1.21463 0.97639 0.94055 0.98915 1.20110 0.79694 0.86524 0.81703 1.90580 1.40483 1.76423 1.35360 1.47889 1.47147 1.15377 1.22169 1.22937 0.93558 0.99958 0.89147 1.21379 0.96395 0.87676 0.94163 1.44255 1.54904 1.11244 1.22346 1.18917 1.01731 1.10157 1.08315 0.89453 1.25256 0.97823 0.96819 0.97497 1.69816 1.34553 1.09892 1.40691 0.86994 0.87062 0.78337 0.76363 1.21541 1.23049 1.19462 1.21755 0.92667 0.99896 0.87011 1.22207 0.98484 0.82216 0.99717 1.21416 0.95848 0.99271 0.96401 1.22388 0.96271 1.03996 0.97683 1.22622 0.99072 0.94102 0.86057 1.88050 1.19467 1.76289 1.45141 1.23162 0.81979 0.99527 0.97268 0.91620 0.91294 0.90219 0.88873 0.90985 0.90588 0.94929 0.92674 0.94943 0.89944 0.89862 0.91329 0.91608 0.90795 0.88665 0.91278 0.89102 0.93562 0.86842 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.09 37.16 0.30 -1.21 16 2 C -0.12 -1.46 0.50 -155.52 -0.08 -1.54 16 3 C 0.53 8.86 5.88 -10.99 -0.06 8.80 16 4 O -0.55 -10.66 13.34 5.55 0.07 -10.59 16 5 N -0.59 -10.28 2.94 -172.49 -0.51 -10.78 16 6 C 0.07 1.03 4.19 -3.60 -0.02 1.01 16 7 C 0.13 2.41 6.36 -3.59 -0.02 2.39 16 8 N -0.60 -14.05 2.75 -172.03 -0.47 -14.53 16 9 C -0.26 -7.16 10.04 -15.06 -0.15 -7.31 16 10 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 11 C 0.03 0.72 5.26 -17.43 -0.09 0.63 16 12 N -0.91 -27.45 13.97 55.49 0.78 -26.67 16 13 Si 0.88 22.54 24.33 -169.99 -4.14 18.41 16 14 H -0.29 -7.11 6.57 56.52 0.37 -6.74 16 15 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 16 H -0.27 -6.91 6.63 56.52 0.37 -6.53 16 17 C 0.11 2.53 4.35 -3.59 -0.02 2.52 16 18 C 0.10 1.89 6.58 -3.60 -0.02 1.87 16 19 C -0.09 -1.05 4.42 -26.48 -0.12 -1.16 16 20 C -0.17 -2.02 5.82 -26.52 -0.15 -2.17 16 21 C 0.06 0.69 6.84 37.21 0.25 0.94 16 22 O -0.37 -5.52 10.45 -35.23 -0.37 -5.88 16 23 C 0.06 0.70 5.17 37.21 0.19 0.89 16 24 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 25 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 26 H 0.08 0.79 4.82 -51.93 -0.25 0.54 16 27 H 0.09 1.10 2.73 -51.93 -0.14 0.96 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.32 7.93 -51.93 -0.41 0.91 16 30 H 0.03 0.61 7.41 -51.93 -0.38 0.23 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.03 0.76 7.18 -51.93 -0.37 0.39 16 33 H 0.08 1.99 4.22 -51.93 -0.22 1.77 16 34 H 0.08 1.61 7.02 -51.93 -0.36 1.25 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.90 7.99 -51.93 -0.42 0.48 16 38 H 0.09 1.49 5.90 -51.93 -0.31 1.19 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.11 1.42 3.80 -51.93 -0.20 1.22 16 43 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 LS Contribution 310.11 15.07 4.67 4.67 Total: -1.00 -32.73 310.11 -6.43 -39.15 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.48 Total: 0.57 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 0.01 Total: 5.65 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.21 Total: -51.98 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.29 Total: -16.47 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.14 Total: 18.41 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.73 -6.43 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408167082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.318 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds