Wall clock time and date at job start Tue Mar 31 2020 01:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 113.38595 * 2 1 4 4 C 1.53512 * 114.16886 * 226.91571 * 2 1 3 5 5 N 1.47476 * 87.93413 * 220.33190 * 4 2 1 6 6 C 1.46902 * 111.00156 * 138.70470 * 5 4 2 7 7 C 1.50694 * 109.47132 * 74.02867 * 6 5 4 8 8 O 1.21294 * 119.99943 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00457 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00302 * 180.02562 * 9 7 6 11 11 H 1.07997 * 119.99769 * 0.02562 * 10 9 7 12 12 C 1.38949 * 119.99700 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00093 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99513 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47327 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47219 * 120.00072 * 14 12 10 17 17 H 1.48497 * 109.47216 * 239.99783 * 14 12 10 18 18 C 1.47481 * 87.83388 * 27.01341 * 5 4 2 19 19 H 1.09005 * 113.47766 * 87.81847 * 18 5 4 20 20 C 1.53004 * 113.47758 * 218.21895 * 18 5 4 21 21 H 1.09006 * 110.41382 * 42.80969 * 20 18 5 22 22 C 1.54477 * 110.37491 * 280.49894 * 20 18 5 23 23 C 1.54510 * 104.18108 * 217.25643 * 22 20 18 24 24 C 1.54478 * 104.06500 * 359.93120 * 23 22 20 25 25 O 1.44415 * 104.80258 * 23.97587 * 24 23 22 26 26 H 1.09002 * 109.47404 * 286.92489 * 1 2 3 27 27 H 1.08998 * 109.46588 * 46.91882 * 1 2 3 28 28 H 1.09000 * 109.47133 * 166.92006 * 1 2 3 29 29 H 1.08993 * 109.47357 * 193.07817 * 3 2 1 30 30 H 1.09000 * 109.47294 * 313.07928 * 3 2 1 31 31 H 1.09006 * 109.46807 * 73.07557 * 3 2 1 32 32 H 1.08997 * 113.47255 * 105.56644 * 4 2 1 33 33 H 1.08997 * 113.47980 * 335.10468 * 4 2 1 34 34 H 1.08997 * 109.47477 * 194.03162 * 6 5 4 35 35 H 1.09004 * 109.46926 * 314.03437 * 6 5 4 36 36 H 0.96996 * 119.99751 * 0.02562 * 9 7 6 37 37 H 0.96995 * 119.99524 * 180.02562 * 13 12 10 38 38 H 1.09002 * 110.51371 * 98.54158 * 22 20 18 39 39 H 1.08994 * 110.51108 * 335.96806 * 22 20 18 40 40 H 1.09000 * 110.51039 * 118.57850 * 23 22 20 41 41 H 1.09007 * 110.50911 * 241.14516 * 23 22 20 42 42 H 1.08998 * 110.37372 * 142.81215 * 24 23 22 43 43 H 1.09003 * 110.36949 * 265.14479 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1373 1.4043 0.0000 4 6 2.1586 -0.9567 -1.0229 5 7 3.1618 -1.3060 0.0000 6 6 3.4330 -2.7498 0.0001 7 6 4.2659 -3.1045 -1.2046 8 8 4.6012 -2.2396 -1.9861 9 7 4.6384 -4.3828 -1.4137 10 6 5.3967 -4.7054 -2.5094 11 1 5.6959 -3.9351 -3.2048 12 6 5.7802 -6.0233 -2.7252 13 7 5.4157 -6.9606 -1.8793 14 14 6.8140 -6.4627 -4.2177 15 1 7.0895 -5.2358 -5.0077 16 1 8.0973 -7.0623 -3.7719 17 1 6.0775 -7.4392 -5.0599 18 6 2.1585 -0.9566 1.0230 19 1 1.5096 -1.7886 1.2968 20 6 2.7515 -0.2438 2.2400 21 1 3.4790 0.5045 1.9252 22 6 3.4093 -1.2653 3.1940 23 6 3.0877 -0.7263 4.6059 24 6 2.2742 0.5598 4.3404 25 8 1.7053 0.3719 3.0264 26 1 -0.3634 0.2992 0.9831 27 1 -0.3632 0.7019 -0.7506 28 1 -0.3633 -1.0010 -0.2326 29 1 3.2002 1.3405 -0.2325 30 1 1.6373 2.0164 -0.7506 31 1 2.0069 1.8565 0.9832 32 1 2.5811 -0.4488 -1.8898 33 1 1.5090 -1.7883 -1.2960 34 1 3.9739 -3.0179 0.9076 35 1 2.4906 -3.2964 -0.0361 36 1 4.3701 -5.0745 -0.7890 37 1 5.6838 -7.8805 -2.0298 38 1 4.4870 -1.2983 3.0341 39 1 2.9730 -2.2543 3.0542 40 1 2.4904 -1.4479 5.1632 41 1 4.0066 -0.4951 5.1449 42 1 1.4845 0.6695 5.0837 43 1 2.9287 1.4314 4.3494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408211106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:02 Heat of formation + Delta-G solvation = -51.789453 kcal Electronic energy + Delta-G solvation = -23198.088068 eV Core-core repulsion = 19858.175099 eV Total energy + Delta-G solvation = -3339.912969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94106 -38.82865 -37.75562 -33.96241 -32.88227 -31.97595 -31.19050 -30.05321 -27.96794 -27.31019 -25.16596 -24.81695 -22.44360 -21.99948 -20.89312 -19.19384 -18.24437 -17.82245 -16.39893 -16.25541 -15.95894 -15.48148 -14.99475 -14.68260 -14.44874 -14.02651 -13.87094 -13.71857 -13.64534 -12.90446 -12.78282 -12.38914 -12.15982 -12.08322 -11.83263 -11.71749 -11.56101 -11.49962 -11.36295 -11.20600 -11.06760 -10.84578 -10.67056 -10.34903 -10.30146 -10.18906 -9.77545 -9.70220 -9.49762 -8.66935 -8.21786 -7.95265 -6.40990 -3.81674 3.16691 3.27144 3.34428 3.56073 3.91797 4.15627 4.36137 4.48938 4.57032 4.67669 4.86402 4.89445 4.98741 5.18078 5.20763 5.24037 5.35376 5.38735 5.41969 5.53656 5.59345 5.67789 5.70285 5.74848 5.79516 5.85748 5.91340 5.94097 6.02862 6.05348 6.08828 6.15930 6.26841 6.31285 6.35470 6.55951 6.65695 6.83769 7.32453 7.56136 8.07021 8.62564 9.19109 9.55297 10.07225 10.76990 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024357 B = 0.003992 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.275919 B = 7012.641255 C = 7725.390748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 C -0.121 4.121 4 C 0.020 3.980 5 N -0.431 5.431 6 C 0.009 3.991 7 C 0.446 3.554 8 O -0.577 6.577 9 N -0.566 5.566 10 C -0.297 4.297 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.037 3.963 19 H 0.079 0.921 20 C 0.096 3.904 21 H 0.081 0.919 22 C -0.151 4.151 23 C -0.155 4.155 24 C 0.046 3.954 25 O -0.369 6.369 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.391 0.609 37 H 0.271 0.729 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 11.515 11.846 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.083 4.083 3 C -0.178 4.178 4 C -0.109 4.109 5 N -0.154 5.154 6 C -0.123 4.123 7 C 0.231 3.769 8 O -0.461 6.461 9 N -0.203 5.203 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.073 4.073 19 H 0.097 0.903 20 C 0.038 3.962 21 H 0.099 0.901 22 C -0.189 4.189 23 C -0.193 4.193 24 C -0.031 4.031 25 O -0.288 6.288 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.224 0.776 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.937 12.228 11.236 18.406 hybrid contribution -0.092 -1.629 -0.121 1.636 sum -8.029 10.599 11.115 17.330 Atomic orbital electron populations 1.21686 0.93850 1.01485 1.02025 1.21981 0.95037 0.95485 0.95839 1.21504 1.01247 0.93484 1.01555 1.23834 0.92663 0.97681 0.96722 1.68613 1.28860 1.15140 1.02829 1.22496 0.99776 0.90257 0.99753 1.19651 0.85642 0.83602 0.87990 1.90525 1.59380 1.48012 1.48136 1.41874 1.47097 1.06736 1.24586 1.19748 1.27136 0.93761 1.02034 0.87894 1.25250 0.98388 0.95350 0.98972 1.69622 1.46439 1.01647 1.36725 0.85811 0.79136 0.78631 0.80845 1.19218 1.20755 1.20776 1.23563 0.93569 0.97774 0.92398 0.90328 1.22810 0.88855 0.93893 0.90648 0.90124 1.22986 1.02077 0.99960 0.93876 1.22939 1.00656 0.97941 0.97763 1.23350 0.97280 0.96771 0.85738 1.89121 1.36520 1.81510 1.21611 0.91905 0.92518 0.92911 0.91456 0.92828 0.92025 0.89003 0.91764 0.89317 0.92809 0.77554 0.91962 0.90213 0.90899 0.90925 0.90741 0.89426 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.30 37.16 0.35 -1.17 16 2 C -0.08 -1.10 1.38 -153.98 -0.21 -1.31 16 3 C -0.12 -1.52 7.99 37.16 0.30 -1.22 16 4 C 0.02 0.32 5.81 -7.56 -0.04 0.28 16 5 N -0.43 -7.33 5.66 -237.89 -1.35 -8.67 16 6 C 0.01 0.17 5.31 -4.98 -0.03 0.14 16 7 C 0.45 10.70 7.62 -10.99 -0.08 10.61 16 8 O -0.58 -15.84 15.34 5.54 0.09 -15.75 16 9 N -0.57 -14.53 5.29 -10.97 -0.06 -14.58 16 10 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 14 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 C 0.04 0.51 2.14 -71.44 -0.15 0.36 16 19 H 0.08 1.08 7.69 -51.93 -0.40 0.68 16 20 C 0.10 1.21 2.33 -25.95 -0.06 1.15 16 21 H 0.08 1.09 7.15 -51.93 -0.37 0.71 16 22 C -0.15 -1.74 6.62 -25.16 -0.17 -1.90 16 23 C -0.16 -1.43 7.09 -25.16 -0.18 -1.60 16 24 C 0.05 0.43 7.64 37.93 0.29 0.72 16 25 O -0.37 -4.55 10.82 -35.23 -0.38 -4.93 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 29 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.74 6.94 -51.93 -0.36 0.38 16 32 H 0.09 1.65 8.11 -51.93 -0.42 1.23 16 33 H 0.06 1.03 7.49 -51.93 -0.39 0.64 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.05 0.90 7.56 -51.93 -0.39 0.51 16 36 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.85 7.84 -51.93 -0.41 0.45 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -31.04 344.65 -8.24 -39.27 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.20 Total: 9.28 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -0.23 Total: -1.97 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.68 Total: -47.27 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.30 Total: -20.68 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.04 -8.24 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408211106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.517 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds