Wall clock time and date at job start Tue Mar 31 2020 01:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 113.38354 * 2 1 4 4 C 1.53508 * 114.17173 * 226.91788 * 2 1 3 5 5 N 1.47478 * 87.93624 * 272.38103 * 4 2 1 6 6 C 1.46904 * 111.00151 * 221.30038 * 5 4 2 7 7 C 1.50701 * 109.46810 * 265.96661 * 6 5 4 8 8 O 1.21289 * 120.00289 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99997 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00029 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00304 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00107 * 180.02562 * 10 9 7 13 13 N 1.31413 * 119.99987 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99663 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47309 * 90.00093 * 14 12 10 16 16 H 1.48510 * 109.46683 * 209.99656 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99460 * 14 12 10 18 18 C 1.47477 * 87.83285 * 332.98711 * 5 4 2 19 19 H 1.09003 * 113.48242 * 272.18426 * 18 5 4 20 20 C 1.53002 * 113.47510 * 141.77827 * 18 5 4 21 21 H 1.09001 * 109.89998 * 318.98399 * 20 18 5 22 22 C 1.54381 * 109.83209 * 79.92283 * 20 18 5 23 23 C 1.55301 * 102.25481 * 140.87135 * 22 20 18 24 24 C 1.54945 * 100.94080 * 325.86233 * 23 22 20 25 25 O 1.43240 * 109.82975 * 198.05268 * 20 18 5 26 26 H 1.09000 * 109.47127 * 286.91837 * 1 2 3 27 27 H 1.08995 * 109.47255 * 46.92008 * 1 2 3 28 28 H 1.09000 * 109.47109 * 166.91900 * 1 2 3 29 29 H 1.09004 * 109.47355 * 193.08007 * 3 2 1 30 30 H 1.08993 * 109.47133 * 313.07974 * 3 2 1 31 31 H 1.08999 * 109.47096 * 73.08156 * 3 2 1 32 32 H 1.08998 * 113.47715 * 157.61007 * 4 2 1 33 33 H 1.09005 * 113.47605 * 27.14503 * 4 2 1 34 34 H 1.09003 * 109.46731 * 25.96188 * 6 5 4 35 35 H 1.08991 * 109.47326 * 145.96575 * 6 5 4 36 36 H 0.97001 * 119.99722 * 0.02562 * 9 7 6 37 37 H 0.97000 * 119.99736 * 180.02562 * 13 12 10 38 38 H 1.09006 * 110.84233 * 259.05900 * 22 20 18 39 39 H 1.09000 * 110.84827 * 22.67545 * 22 20 18 40 40 H 1.09002 * 111.12094 * 207.94390 * 23 22 20 41 41 H 1.08995 * 111.12749 * 83.78531 * 23 22 20 42 42 H 1.09004 * 110.31131 * 277.53032 * 24 23 22 43 43 H 1.09001 * 110.30800 * 155.36466 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1372 1.4043 0.0000 4 6 2.1586 -0.9566 -1.0229 5 7 2.0810 -2.0161 0.0000 6 6 3.2985 -2.8381 0.0001 7 6 3.0883 -4.0473 -0.8743 8 8 2.0287 -4.2083 -1.4422 9 7 4.0781 -4.9493 -1.0263 10 6 3.8867 -6.0496 -1.8214 11 1 2.9429 -6.1935 -2.3263 12 6 4.9070 -6.9799 -1.9776 13 7 4.7237 -8.0343 -2.7401 14 14 6.5392 -6.7315 -1.1037 15 1 6.4896 -7.3798 0.2314 16 1 7.6292 -7.3391 -1.9088 17 1 6.7965 -5.2783 -0.9390 18 6 2.1585 -0.9566 1.0229 19 1 3.1797 -0.6912 1.2968 20 6 1.2688 -1.2181 2.2399 21 1 0.3074 -1.6180 1.9175 22 6 1.9609 -2.2195 3.1893 23 6 1.6089 -1.6445 4.5884 24 6 1.6119 -0.1239 4.2907 25 8 1.0692 0.0001 2.9665 26 1 -0.3633 0.2991 0.9832 27 1 -0.3633 0.7019 -0.7506 28 1 -0.3633 -1.0010 -0.2326 29 1 3.2002 1.3405 -0.2326 30 1 1.6372 2.0163 -0.7506 31 1 2.0069 1.8565 0.9832 32 1 3.1797 -0.6905 -1.2959 33 1 1.5247 -1.1429 -1.8899 34 1 4.1327 -2.2516 -0.3852 35 1 3.5198 -3.1596 1.0177 36 1 4.9257 -4.8203 -0.5725 37 1 5.4358 -8.6839 -2.8489 38 1 1.5472 -3.2204 3.0659 39 1 3.0394 -2.2221 3.0311 40 1 2.3721 -1.9027 5.3225 41 1 0.6240 -1.9791 4.9142 42 1 2.6296 0.2654 4.3205 43 1 0.9832 0.4033 5.0083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408211108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:06 Heat of formation + Delta-G solvation = -43.719702 kcal Electronic energy + Delta-G solvation = -23308.214480 eV Core-core repulsion = 19968.651442 eV Total energy + Delta-G solvation = -3339.563038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.05554 -38.89232 -37.94197 -33.97826 -33.00653 -32.07180 -31.60641 -30.14400 -28.16295 -27.34351 -25.28197 -24.75309 -22.35066 -21.91588 -21.12694 -19.35662 -18.50841 -17.98181 -16.84633 -16.29868 -15.79407 -15.56513 -15.29872 -14.80496 -14.60152 -13.99737 -13.90405 -13.45014 -13.27408 -13.07146 -12.78893 -12.55053 -12.53508 -12.26031 -12.05290 -11.88946 -11.83518 -11.61244 -11.40570 -11.25685 -11.14875 -10.90046 -10.86551 -10.59110 -10.40115 -9.97100 -9.92256 -9.53963 -9.47461 -8.78983 -8.27448 -8.14986 -6.28821 -3.79891 3.02459 3.06711 3.14915 3.50621 3.77639 4.10960 4.15551 4.34849 4.46713 4.61138 4.75119 4.78328 4.89421 5.09259 5.12163 5.20581 5.24865 5.31994 5.32801 5.44763 5.52979 5.55590 5.61803 5.63737 5.67904 5.74647 5.78315 5.86915 5.92871 5.97392 6.00723 6.09808 6.10526 6.22843 6.26871 6.54320 6.54672 6.97687 7.20944 7.61125 8.17170 8.63516 8.98414 9.45345 9.87917 10.84619 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.004461 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.361518 B = 6275.237148 C = 6961.823584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 C -0.132 4.132 4 C 0.009 3.991 5 N -0.427 5.427 6 C 0.005 3.995 7 C 0.457 3.543 8 O -0.554 6.554 9 N -0.595 5.595 10 C -0.303 4.303 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.883 5.883 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.271 1.271 18 C 0.020 3.980 19 H 0.074 0.926 20 C 0.100 3.900 21 H 0.094 0.906 22 C -0.151 4.151 23 C -0.157 4.157 24 C 0.050 3.950 25 O -0.373 6.373 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.369 0.631 37 H 0.273 0.727 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 17.957 13.602 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.190 4.190 4 C -0.120 4.120 5 N -0.150 5.150 6 C -0.127 4.127 7 C 0.243 3.757 8 O -0.435 6.435 9 N -0.236 5.236 10 C -0.431 4.431 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.524 5.524 14 Si 0.705 3.295 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.196 1.196 18 C -0.090 4.090 19 H 0.092 0.908 20 C 0.042 3.958 21 H 0.112 0.888 22 C -0.189 4.189 23 C -0.194 4.194 24 C -0.027 4.027 25 O -0.291 6.291 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.201 0.799 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.257 17.295 13.033 21.900 hybrid contribution 2.582 0.140 0.720 2.684 sum -0.675 17.435 13.753 22.217 Atomic orbital electron populations 1.21523 0.92131 1.02468 1.01806 1.21890 0.96765 0.93639 0.95429 1.21684 0.99773 0.95433 1.02107 1.24036 1.00279 0.90745 0.96961 1.68629 1.33050 1.10412 1.02910 1.22566 0.92733 0.96486 1.00926 1.19555 0.85389 0.84803 0.85986 1.90565 1.26120 1.76848 1.49947 1.42225 1.13656 1.22476 1.45221 1.19424 1.03118 0.97081 1.23511 0.86322 1.25019 0.98122 0.95713 0.97313 1.69622 1.33783 1.11266 1.37696 0.86689 0.84134 0.78314 0.80332 1.19660 1.20196 1.19631 1.23920 0.98529 0.92799 0.93720 0.90817 1.22529 0.98987 0.83734 0.90507 0.88820 1.23188 1.01367 1.00534 0.93815 1.23267 1.02751 0.95689 0.97737 1.23346 0.98557 0.95834 0.84942 1.88419 1.80093 1.36018 1.24611 0.91650 0.92912 0.91348 0.93083 0.92489 0.91870 0.91673 0.89220 0.92335 0.89585 0.79878 0.91677 0.89529 0.90894 0.90193 0.90383 0.92624 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 8.00 37.16 0.30 -1.19 16 2 C -0.08 -0.95 1.31 -153.98 -0.20 -1.15 16 3 C -0.13 -1.37 9.30 37.15 0.35 -1.03 16 4 C 0.01 0.13 6.81 -7.56 -0.05 0.07 16 5 N -0.43 -6.93 5.42 -237.90 -1.29 -8.22 16 6 C 0.01 0.09 5.30 -4.97 -0.03 0.06 16 7 C 0.46 10.63 7.85 -10.98 -0.09 10.55 16 8 O -0.55 -15.31 16.01 5.55 0.09 -15.22 16 9 N -0.60 -14.43 5.09 -10.96 -0.06 -14.48 16 10 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 11 H 0.12 3.89 7.39 -52.48 -0.39 3.51 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -26.06 13.96 55.50 0.77 -25.29 16 14 Si 0.88 19.55 27.74 -169.99 -4.71 14.83 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 18 C 0.02 0.26 2.07 -71.45 -0.15 0.11 16 19 H 0.07 0.91 7.81 -51.93 -0.41 0.50 16 20 C 0.10 1.23 2.63 -26.01 -0.07 1.16 16 21 H 0.09 1.28 7.23 -51.93 -0.38 0.90 16 22 C -0.15 -1.66 6.32 -24.79 -0.16 -1.82 16 23 C -0.16 -1.36 7.16 -24.49 -0.18 -1.54 16 24 C 0.05 0.45 7.78 38.18 0.30 0.75 16 25 O -0.37 -4.37 10.14 -35.23 -0.36 -4.73 16 26 H 0.06 0.78 6.75 -51.93 -0.35 0.43 16 27 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 29 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.89 7.21 -51.93 -0.37 0.52 16 33 H 0.09 1.44 8.12 -51.93 -0.42 1.02 16 34 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 35 H 0.09 1.29 7.40 -51.93 -0.38 0.91 16 36 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.78 7.36 -51.93 -0.38 0.40 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -32.73 340.81 -7.70 -40.43 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -7.07 Total: 9.35 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.22 Total: -1.81 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.57 Total: -47.99 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.27 Total: -19.95 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.73 -7.70 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408211108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.287 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds