Wall clock time and date at job start Tue Mar 31 2020 01:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 113.38354 * 2 1 4 4 C 1.53508 * 114.17173 * 226.91788 * 2 1 3 5 5 N 1.47478 * 87.93624 * 272.38103 * 4 2 1 6 6 C 1.46904 * 111.00151 * 221.30038 * 5 4 2 7 7 C 1.50701 * 109.46810 * 265.96661 * 6 5 4 8 8 O 1.21289 * 120.00289 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99997 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00029 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00304 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00107 * 180.02562 * 10 9 7 13 13 N 1.31413 * 119.99987 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99663 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47309 * 90.00093 * 14 12 10 16 16 H 1.48510 * 109.46683 * 209.99656 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99460 * 14 12 10 18 18 C 1.47477 * 87.83285 * 332.98711 * 5 4 2 19 19 H 1.09003 * 113.48242 * 272.18426 * 18 5 4 20 20 C 1.53002 * 113.47510 * 141.77827 * 18 5 4 21 21 H 1.09001 * 109.89998 * 318.98399 * 20 18 5 22 22 C 1.54381 * 109.83209 * 79.92283 * 20 18 5 23 23 C 1.55301 * 102.25481 * 140.87135 * 22 20 18 24 24 C 1.54945 * 100.94080 * 325.86233 * 23 22 20 25 25 O 1.43240 * 109.82975 * 198.05268 * 20 18 5 26 26 H 1.09000 * 109.47127 * 286.91837 * 1 2 3 27 27 H 1.08995 * 109.47255 * 46.92008 * 1 2 3 28 28 H 1.09000 * 109.47109 * 166.91900 * 1 2 3 29 29 H 1.09004 * 109.47355 * 193.08007 * 3 2 1 30 30 H 1.08993 * 109.47133 * 313.07974 * 3 2 1 31 31 H 1.08999 * 109.47096 * 73.08156 * 3 2 1 32 32 H 1.08998 * 113.47715 * 157.61007 * 4 2 1 33 33 H 1.09005 * 113.47605 * 27.14503 * 4 2 1 34 34 H 1.09003 * 109.46731 * 25.96188 * 6 5 4 35 35 H 1.08991 * 109.47326 * 145.96575 * 6 5 4 36 36 H 0.97001 * 119.99722 * 0.02562 * 9 7 6 37 37 H 0.97000 * 119.99736 * 180.02562 * 13 12 10 38 38 H 1.09006 * 110.84233 * 259.05900 * 22 20 18 39 39 H 1.09000 * 110.84827 * 22.67545 * 22 20 18 40 40 H 1.09002 * 111.12094 * 207.94390 * 23 22 20 41 41 H 1.08995 * 111.12749 * 83.78531 * 23 22 20 42 42 H 1.09004 * 110.31131 * 277.53032 * 24 23 22 43 43 H 1.09001 * 110.30800 * 155.36466 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1372 1.4043 0.0000 4 6 2.1586 -0.9566 -1.0229 5 7 2.0810 -2.0161 0.0000 6 6 3.2985 -2.8381 0.0001 7 6 3.0883 -4.0473 -0.8743 8 8 2.0287 -4.2083 -1.4422 9 7 4.0781 -4.9493 -1.0263 10 6 3.8867 -6.0496 -1.8214 11 1 2.9429 -6.1935 -2.3263 12 6 4.9070 -6.9799 -1.9776 13 7 4.7237 -8.0343 -2.7401 14 14 6.5392 -6.7315 -1.1037 15 1 6.4896 -7.3798 0.2314 16 1 7.6292 -7.3391 -1.9088 17 1 6.7965 -5.2783 -0.9390 18 6 2.1585 -0.9566 1.0229 19 1 3.1797 -0.6912 1.2968 20 6 1.2688 -1.2181 2.2399 21 1 0.3074 -1.6180 1.9175 22 6 1.9609 -2.2195 3.1893 23 6 1.6089 -1.6445 4.5884 24 6 1.6119 -0.1239 4.2907 25 8 1.0692 0.0001 2.9665 26 1 -0.3633 0.2991 0.9832 27 1 -0.3633 0.7019 -0.7506 28 1 -0.3633 -1.0010 -0.2326 29 1 3.2002 1.3405 -0.2326 30 1 1.6372 2.0163 -0.7506 31 1 2.0069 1.8565 0.9832 32 1 3.1797 -0.6905 -1.2959 33 1 1.5247 -1.1429 -1.8899 34 1 4.1327 -2.2516 -0.3852 35 1 3.5198 -3.1596 1.0177 36 1 4.9257 -4.8203 -0.5725 37 1 5.4358 -8.6839 -2.8489 38 1 1.5472 -3.2204 3.0659 39 1 3.0394 -2.2221 3.0311 40 1 2.3721 -1.9027 5.3225 41 1 0.6240 -1.9791 4.9142 42 1 2.6296 0.2654 4.3205 43 1 0.9832 0.4033 5.0083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408211108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:05 Heat of formation + Delta-G solvation = -69.027740 kcal Electronic energy + Delta-G solvation = -23309.311919 eV Core-core repulsion = 19968.651442 eV Total energy + Delta-G solvation = -3340.660477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.13929 -40.12089 -39.48005 -36.01353 -34.20380 -33.69926 -32.90731 -31.00364 -29.54900 -28.27628 -26.65315 -26.20676 -23.68657 -22.66146 -22.05345 -21.27471 -20.28634 -19.20133 -17.91640 -17.50760 -17.06578 -16.81529 -16.68383 -16.28518 -15.85804 -15.32774 -15.09010 -14.82550 -14.48235 -14.34678 -14.27717 -14.01241 -13.72142 -13.44422 -13.23478 -12.99980 -12.86561 -12.69585 -12.55791 -12.43299 -12.27940 -12.05815 -11.98712 -11.93420 -11.67349 -11.52234 -11.45828 -10.86265 -10.56708 -10.27560 -10.25309 -9.70224 -8.42025 -6.03000 1.28116 1.34149 1.42945 1.95291 2.21860 2.46246 2.93938 3.13298 3.34521 3.40258 3.66972 3.67987 3.97367 4.00624 4.06175 4.19855 4.23297 4.30192 4.32428 4.34666 4.39000 4.48042 4.63591 4.76142 4.85680 4.87167 4.90186 4.95211 4.99068 5.05484 5.09525 5.15887 5.19320 5.25562 5.35334 5.45970 5.52683 5.55666 5.91906 6.08529 6.17780 6.59402 6.87901 7.39045 7.97478 8.75973 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.004461 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.361518 B = 6275.237148 C = 6961.823584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.068 4.068 3 C -0.125 4.125 4 C 0.002 3.998 5 N -0.461 5.461 6 C 0.019 3.981 7 C 0.455 3.545 8 O -0.608 6.608 9 N -0.593 5.593 10 C -0.328 4.328 11 H 0.053 0.947 12 C -0.015 4.015 13 N -0.935 5.935 14 Si 0.965 3.035 15 H -0.256 1.256 16 H -0.274 1.274 17 H -0.232 1.232 18 C 0.029 3.971 19 H 0.093 0.907 20 C 0.103 3.897 21 H 0.069 0.931 22 C -0.155 4.155 23 C -0.150 4.150 24 C 0.045 3.955 25 O -0.384 6.384 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.389 0.611 37 H 0.279 0.721 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 20.513 16.453 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.069 4.069 3 C -0.183 4.183 4 C -0.127 4.127 5 N -0.184 5.184 6 C -0.113 4.113 7 C 0.242 3.758 8 O -0.492 6.492 9 N -0.236 5.236 10 C -0.458 4.458 11 H 0.071 0.929 12 C -0.213 4.213 13 N -0.576 5.576 14 Si 0.785 3.215 15 H -0.180 1.180 16 H -0.199 1.199 17 H -0.155 1.155 18 C -0.080 4.080 19 H 0.110 0.890 20 C 0.045 3.955 21 H 0.087 0.913 22 C -0.192 4.192 23 C -0.187 4.187 24 C -0.031 4.031 25 O -0.303 6.303 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.224 0.776 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.393 19.883 15.906 25.465 hybrid contribution 1.518 -0.675 -0.224 1.676 sum 1.125 19.208 15.682 24.822 Atomic orbital electron populations 1.21462 0.92578 1.01134 1.02283 1.21865 0.96436 0.94644 0.93949 1.21638 1.00252 0.93703 1.02711 1.24118 1.00893 0.91262 0.96396 1.68583 1.33090 1.11887 1.04835 1.22486 0.94199 0.93908 1.00719 1.20823 0.84038 0.85756 0.85153 1.90543 1.28360 1.78262 1.52006 1.42040 1.14952 1.21550 1.45029 1.18988 1.01529 0.99921 1.25317 0.92931 1.26112 1.03109 0.94396 0.97690 1.69809 1.35869 1.12550 1.39397 0.85370 0.76592 0.80677 0.78900 1.18022 1.19914 1.15530 1.23936 0.99591 0.91218 0.93281 0.88959 1.22349 0.97867 0.84461 0.90838 0.91284 1.23193 1.01588 0.99424 0.95037 1.23255 1.03367 0.95327 0.96759 1.23562 0.99557 0.96142 0.83878 1.88400 1.80510 1.35503 1.25894 0.91303 0.91746 0.94057 0.92063 0.91714 0.91341 0.90113 0.91957 0.89251 0.86802 0.77582 0.91135 0.91082 0.89970 0.88240 0.90497 0.91317 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 8.00 71.98 0.58 -2.27 16 2 C -0.07 -1.58 1.31 -51.84 -0.07 -1.65 16 3 C -0.13 -2.22 9.30 71.98 0.67 -1.55 16 4 C 0.00 0.06 6.81 83.56 0.57 0.63 16 5 N -0.46 -14.60 5.42 -906.57 -4.91 -19.51 16 6 C 0.02 0.60 5.30 85.56 0.45 1.05 16 7 C 0.45 21.33 7.85 87.66 0.69 22.02 16 8 O -0.61 -35.37 16.01 -3.06 -0.05 -35.42 16 9 N -0.59 -28.65 5.09 -306.98 -1.56 -30.21 16 10 C -0.33 -19.63 10.16 84.04 0.85 -18.77 16 11 H 0.05 3.76 7.39 -2.91 -0.02 3.73 16 12 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 13 N -0.94 -57.07 13.96 21.66 0.30 -56.77 16 14 Si 0.96 39.00 27.74 68.60 1.90 40.90 16 15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.23 -7.87 6.52 99.48 0.65 -7.23 16 18 C 0.03 0.69 2.07 42.18 0.09 0.77 16 19 H 0.09 1.88 7.81 -2.39 -0.02 1.86 16 20 C 0.10 2.38 2.63 31.06 0.08 2.46 16 21 H 0.07 1.92 7.23 -2.39 -0.02 1.90 16 22 C -0.15 -3.07 6.32 31.85 0.20 -2.87 16 23 C -0.15 -2.18 7.16 32.05 0.23 -1.95 16 24 C 0.04 0.66 7.78 72.65 0.56 1.22 16 25 O -0.38 -8.11 10.14 -148.98 -1.51 -9.62 16 26 H 0.07 1.61 6.75 -2.39 -0.02 1.59 16 27 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 28 H 0.04 1.21 7.89 -2.39 -0.02 1.19 16 29 H 0.06 0.97 7.90 -2.39 -0.02 0.95 16 30 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 2.02 7.21 -2.39 -0.02 2.01 16 33 H 0.06 2.09 8.12 -2.38 -0.02 2.07 16 34 H 0.09 2.35 7.30 -2.39 -0.02 2.33 16 35 H 0.11 3.02 7.40 -2.39 -0.02 3.00 16 36 H 0.39 15.44 5.76 -92.71 -0.53 14.91 16 37 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.08 1.47 7.36 -2.39 -0.02 1.45 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -77.37 340.81 -0.05 -77.42 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.40 Total: 34.47 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.37 Total: -1.26 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -6.17 Total: -106.49 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.56 Total: -45.04 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.90 Total: 40.90 kcal Total: -77.37 -0.05 -77.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408211108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.388 kcal (2) G-P(sol) polarization free energy of solvation -77.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds