Wall clock time and date at job start Tue Mar 31 2020 02:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46911 * 2 1 4 4 H 1.09002 * 109.89365 * 305.93158 * 3 2 1 5 5 C 1.54381 * 109.82943 * 184.99720 * 3 2 1 6 6 C 1.55306 * 102.25103 * 219.12765 * 5 3 2 7 7 C 1.54949 * 100.94162 * 34.13483 * 6 5 3 8 8 H 1.08993 * 110.30973 * 82.57054 * 7 6 5 9 9 C 1.50698 * 110.30727 * 204.64024 * 7 6 5 10 10 O 1.21282 * 120.00090 * 114.99838 * 9 7 6 11 11 N 1.34784 * 120.00128 * 294.99748 * 9 7 6 12 12 C 1.47045 * 120.44698 * 359.90734 * 11 9 7 13 13 C 1.53368 * 108.58898 * 235.04717 * 12 11 9 14 14 N 1.46964 * 108.77820 * 310.83069 * 13 12 11 15 15 C 1.36936 * 120.59906 * 235.12180 * 14 13 12 16 16 H 1.07997 * 120.00487 * 152.31818 * 15 14 13 17 17 C 1.38819 * 119.99611 * 332.31708 * 15 14 13 18 18 N 1.31621 * 119.99881 * 159.31762 * 17 15 14 19 19 Si 1.86801 * 120.00057 * 339.31096 * 17 15 14 20 20 H 1.48501 * 109.46750 * 93.64944 * 19 17 15 21 21 H 1.48499 * 109.47129 * 213.64865 * 19 17 15 22 22 H 1.48498 * 109.47258 * 333.65199 * 19 17 15 23 23 C 1.46965 * 118.80789 * 55.14588 * 14 13 12 24 24 C 1.46956 * 120.59624 * 180.02562 * 11 9 7 25 25 O 1.43239 * 109.83077 * 66.86090 * 3 2 1 26 26 H 1.08996 * 109.47105 * 60.00730 * 1 2 3 27 27 H 1.08999 * 109.46616 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47258 * 300.00193 * 1 2 3 29 29 H 1.08991 * 109.47552 * 239.99359 * 2 1 3 30 30 H 1.09004 * 109.46832 * 119.99415 * 2 1 3 31 31 H 1.08999 * 110.84481 * 100.93651 * 5 3 2 32 32 H 1.09001 * 111.02342 * 337.39936 * 5 3 2 33 33 H 1.08998 * 111.12711 * 276.21569 * 6 5 3 34 34 H 1.09003 * 111.12401 * 152.05125 * 6 5 3 35 35 H 1.08998 * 109.48817 * 115.39763 * 12 11 9 36 36 H 1.08996 * 109.77440 * 354.85711 * 12 11 9 37 37 H 1.09003 * 109.61382 * 191.00470 * 13 12 11 38 38 H 1.08999 * 109.61384 * 70.66512 * 13 12 11 39 39 H 0.96993 * 119.99726 * 179.97438 * 18 17 15 40 40 H 1.08993 * 109.61439 * 64.52034 * 23 14 13 41 41 H 1.09008 * 109.60703 * 184.85754 * 23 14 13 42 42 H 1.09000 * 109.61096 * 5.03093 * 24 11 9 43 43 H 1.08997 * 109.61351 * 244.52552 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9927 -0.8299 5 6 3.5786 1.4541 -0.1265 6 6 3.9797 2.6056 0.8354 7 6 2.8992 2.4590 1.9363 8 1 3.1871 1.6857 2.6484 9 6 2.6943 3.7724 2.6461 10 8 1.6304 4.3484 2.5607 11 7 3.6934 4.3071 3.3760 12 6 4.9866 3.6162 3.4879 13 6 5.3087 3.4195 4.9744 14 7 5.1232 4.6996 5.6721 15 6 6.1381 5.2426 6.4139 16 1 6.1971 6.3128 6.5468 17 6 7.0912 4.4175 6.9951 18 7 8.2598 4.9092 7.3486 19 14 6.7151 2.6094 7.2758 20 1 7.2062 1.8165 6.1202 21 1 7.3918 2.1496 8.5150 22 1 5.2482 2.4247 7.4151 23 6 3.8287 5.3863 5.5598 24 6 3.5076 5.5869 4.0741 25 8 1.7027 2.0772 1.2391 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 3.8820 1.6792 -1.1489 32 1 4.0052 0.5068 0.2032 33 1 3.9074 3.5740 0.3405 34 1 4.9787 2.4478 1.2420 35 1 5.7639 4.2218 3.0221 36 1 4.9303 2.6460 2.9944 37 1 6.3417 3.0894 5.0844 38 1 4.6387 2.6715 5.3982 39 1 8.9256 4.3327 7.7550 40 1 3.0511 4.7792 6.0232 41 1 3.8834 6.3538 6.0589 42 1 2.4746 5.9168 3.9645 43 1 4.1796 6.3344 3.6525 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408244183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:27 Heat of formation + Delta-G solvation = -49.215882 kcal Electronic energy + Delta-G solvation = -23476.090575 eV Core-core repulsion = 20136.289204 eV Total energy + Delta-G solvation = -3339.801370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54733 -38.89225 -36.99260 -34.14189 -33.72244 -32.43974 -31.52865 -30.85647 -28.89663 -27.12506 -24.66218 -23.38421 -23.29857 -21.99889 -21.32773 -20.46520 -18.89799 -17.83051 -16.76612 -16.35046 -15.93593 -15.73245 -15.08488 -14.62445 -14.41248 -14.26835 -14.08035 -13.92283 -13.51915 -13.35963 -13.09328 -12.81231 -12.59219 -12.21638 -12.07758 -12.05764 -11.95863 -11.64784 -11.20788 -11.13034 -11.07165 -11.00689 -10.83308 -10.43732 -10.33771 -10.12118 -9.91928 -9.60481 -9.21876 -8.91506 -8.35489 -7.04977 -6.04821 -3.42119 2.75846 2.98211 3.20149 3.41206 3.43589 3.79319 4.19372 4.41350 4.42339 4.50279 4.75995 4.85010 4.86673 4.92620 5.05217 5.16601 5.23862 5.25517 5.37858 5.48330 5.52008 5.54951 5.60242 5.66173 5.72675 5.74738 5.79805 5.81868 5.98902 6.02504 6.05262 6.13458 6.15252 6.34855 6.43823 6.66141 6.76390 6.93668 7.67137 7.83206 8.22828 8.40272 8.81445 9.60250 9.96759 11.10898 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.004551 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.716706 B = 6150.479185 C = 6634.061703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.081 0.919 5 C -0.150 4.150 6 C -0.149 4.149 7 C 0.065 3.935 8 H 0.094 0.906 9 C 0.511 3.489 10 O -0.535 6.535 11 N -0.597 5.597 12 C 0.085 3.915 13 C 0.111 3.889 14 N -0.604 5.604 15 C -0.263 4.263 16 H 0.088 0.912 17 C 0.025 3.975 18 N -0.905 5.905 19 Si 0.880 3.120 20 H -0.288 1.288 21 H -0.301 1.301 22 H -0.270 1.270 23 C 0.134 3.866 24 C 0.097 3.903 25 O -0.346 6.346 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.264 0.736 40 H 0.028 0.972 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.579 -8.762 -15.466 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.099 0.901 5 C -0.188 4.188 6 C -0.186 4.186 7 C 0.004 3.996 8 H 0.112 0.888 9 C 0.298 3.702 10 O -0.412 6.412 11 N -0.331 5.331 12 C -0.040 4.040 13 C -0.015 4.015 14 N -0.328 5.328 15 C -0.391 4.391 16 H 0.106 0.894 17 C -0.174 4.174 18 N -0.547 5.547 19 Si 0.710 3.290 20 H -0.215 1.215 21 H -0.229 1.229 22 H -0.195 1.195 23 C 0.008 3.992 24 C -0.027 4.027 25 O -0.264 6.264 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.196 -8.417 -15.329 19.758 hybrid contribution 0.290 -1.185 0.232 1.242 sum -8.906 -9.602 -15.097 19.986 Atomic orbital electron populations 1.21712 0.95235 1.01295 1.02497 1.21908 0.97118 0.95625 1.02349 1.22870 0.94260 0.93581 0.87444 0.90133 1.23195 0.95292 0.99336 1.00933 1.23383 0.99301 1.00206 0.95756 1.22782 0.86318 0.95135 0.95334 0.88803 1.20343 0.83951 0.86468 0.79429 1.90668 1.25685 1.62479 1.62340 1.47972 1.13292 1.23139 1.48706 1.22594 0.84684 0.96587 1.00112 1.21736 1.00692 0.89347 0.89734 1.44287 1.10601 1.22065 1.55876 1.18944 1.01753 0.93044 1.25399 0.89420 1.25296 0.96092 0.97748 0.98283 1.69829 1.04329 1.36139 1.44424 0.86997 0.78576 0.86650 0.76785 1.21540 1.22892 1.19544 1.21333 0.87656 0.97728 0.92503 1.22211 1.02040 0.84060 0.94382 1.88558 1.27408 1.77841 1.32594 0.92910 0.92991 0.91799 0.91068 0.91412 0.89676 0.89970 0.89719 0.88509 0.90572 0.90505 0.89798 0.95142 0.92631 0.95373 0.90450 0.89549 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.83 37.16 0.37 -1.01 16 2 C -0.13 -1.16 5.51 -26.73 -0.15 -1.31 16 3 C 0.08 0.79 3.51 -26.01 -0.09 0.70 16 4 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 5 C -0.15 -1.25 6.54 -24.78 -0.16 -1.42 16 6 C -0.15 -1.55 5.73 -24.48 -0.14 -1.69 16 7 C 0.07 0.89 2.92 -26.86 -0.08 0.81 16 8 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 9 C 0.51 8.80 7.12 -10.98 -0.08 8.73 16 10 O -0.53 -11.08 15.95 -13.80 -0.22 -11.30 16 11 N -0.60 -10.12 2.95 -172.46 -0.51 -10.63 16 12 C 0.08 1.35 5.76 -3.55 -0.02 1.33 16 13 C 0.11 2.26 4.37 -3.60 -0.02 2.24 16 14 N -0.60 -13.78 2.74 -172.07 -0.47 -14.25 16 15 C -0.26 -7.06 10.03 -15.06 -0.15 -7.21 16 16 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 17 C 0.03 0.70 5.23 -17.43 -0.09 0.61 16 18 N -0.90 -26.77 13.97 55.49 0.78 -25.99 16 19 Si 0.88 21.34 24.37 -169.99 -4.14 17.20 16 20 H -0.29 -6.54 6.64 56.52 0.38 -6.17 16 21 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 22 H -0.27 -6.55 6.63 56.52 0.37 -6.18 16 23 C 0.13 2.63 6.67 -3.62 -0.02 2.60 16 24 C 0.10 1.68 6.60 -3.62 -0.02 1.66 16 25 O -0.35 -5.03 9.90 -54.58 -0.54 -5.57 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.71 7.90 -51.93 -0.41 0.30 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.60 7.86 -51.93 -0.41 0.19 16 33 H 0.08 0.93 8.05 -51.93 -0.42 0.52 16 34 H 0.10 0.87 6.33 -51.93 -0.33 0.55 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 0.98 4.36 -51.93 -0.23 0.75 16 37 H 0.08 1.82 4.41 -51.93 -0.23 1.59 16 38 H 0.03 0.63 7.17 -51.93 -0.37 0.25 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.46 7.93 -51.92 -0.41 1.05 16 42 H 0.09 1.49 6.99 -51.93 -0.36 1.12 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -32.48 328.30 -7.80 -40.28 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.98 Total: -0.73 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -0.66 Total: 6.05 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.21 Total: -50.88 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.76 Total: -16.87 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.20 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.48 -7.80 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408244183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.937 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds