Wall clock time and date at job start Tue Mar 31 2020 02:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46989 * 2 1 4 4 H 1.09006 * 109.86679 * 54.55827 * 3 2 1 5 5 C 1.54102 * 109.87811 * 175.71504 * 3 2 1 6 6 C 1.54804 * 104.18520 * 121.45723 * 5 3 2 7 7 C 1.54995 * 102.09475 * 20.87978 * 6 5 3 8 8 H 1.08998 * 110.75152 * 81.53977 * 7 6 5 9 9 C 1.50703 * 110.61799 * 204.47445 * 7 6 5 10 10 O 1.21275 * 120.00001 * 110.52701 * 9 7 6 11 11 N 1.34777 * 120.00108 * 290.52777 * 9 7 6 12 12 C 1.46962 * 120.59306 * 180.02562 * 11 9 7 13 13 C 1.53366 * 108.77379 * 235.11242 * 12 11 9 14 14 N 1.47040 * 108.59701 * 310.83497 * 13 12 11 15 15 C 1.36939 * 120.45380 * 235.05913 * 14 13 12 16 16 H 1.08004 * 120.00049 * 28.04808 * 15 14 13 17 17 C 1.38811 * 120.00242 * 208.06047 * 15 14 13 18 18 N 1.31614 * 119.99962 * 17.56757 * 17 15 14 19 19 Si 1.86804 * 119.99799 * 197.57513 * 17 15 14 20 20 H 1.48491 * 109.46993 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46820 * 119.99622 * 19 17 15 22 22 H 1.48496 * 109.46942 * 239.99176 * 19 17 15 23 23 C 1.46962 * 118.95563 * 54.95308 * 14 13 12 24 24 C 1.46963 * 120.59236 * 359.97438 * 11 9 7 25 25 O 1.43735 * 109.88078 * 293.54934 * 3 2 1 26 26 H 1.08998 * 109.47101 * 299.99443 * 1 2 3 27 27 H 1.08998 * 109.47478 * 59.99928 * 1 2 3 28 28 H 1.09007 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46658 * 240.00459 * 2 1 3 30 30 H 1.08994 * 109.47207 * 120.00487 * 2 1 3 31 31 H 1.08996 * 110.48494 * 240.13529 * 5 3 2 32 32 H 1.09008 * 110.48457 * 2.64815 * 5 3 2 33 33 H 1.09001 * 110.90612 * 262.68036 * 6 5 3 34 34 H 1.08999 * 110.90805 * 139.08001 * 6 5 3 35 35 H 1.08998 * 109.61331 * 354.94700 * 12 11 9 36 36 H 1.09001 * 109.60704 * 115.28669 * 12 11 9 37 37 H 1.09007 * 109.60743 * 70.41030 * 13 12 11 38 38 H 1.09010 * 109.60900 * 190.91815 * 13 12 11 39 39 H 0.97001 * 119.99898 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.61331 * 185.12698 * 23 14 13 41 41 H 1.09000 * 109.75270 * 64.69882 * 23 14 13 42 42 H 1.09001 * 109.61106 * 244.54241 * 24 11 9 43 43 H 1.09001 * 109.61326 * 4.88461 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9899 0.8352 5 6 3.5772 1.4549 0.1083 6 6 4.0409 2.2090 -1.1616 7 6 2.7657 2.9975 -1.5549 8 1 2.6785 3.9098 -0.9649 9 6 2.7732 3.3183 -3.0274 10 8 1.9862 2.7720 -3.7710 11 7 3.6545 4.2124 -3.5178 12 6 3.6728 4.5354 -4.9514 13 6 5.0884 4.2997 -5.4924 14 7 6.0485 4.9662 -4.6001 15 6 6.9435 5.8751 -5.0983 16 1 6.6988 6.4451 -5.9824 17 6 8.1653 6.0637 -4.4671 18 7 8.6162 5.1602 -3.6229 19 14 9.1694 7.5998 -4.8157 20 1 8.4472 8.4516 -5.7945 21 1 9.3706 8.3565 -3.5540 22 1 10.4888 7.2121 -5.3761 23 6 6.0301 4.6432 -3.1666 24 6 4.6136 4.8824 -2.6284 25 8 1.6938 2.0834 -1.2391 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8921 1.9882 1.0051 32 1 3.9674 0.4370 0.1140 33 1 4.3235 1.5092 -1.9481 34 1 4.8627 2.8875 -0.9328 35 1 2.9676 3.8941 -5.4800 36 1 3.3957 5.5798 -5.0945 37 1 5.2971 3.2301 -5.5173 38 1 5.1698 4.7143 -6.4973 39 1 9.4699 5.2922 -3.1815 40 1 6.7353 5.2845 -2.6379 41 1 6.3054 3.5986 -3.0208 42 1 4.4062 5.9523 -2.6064 43 1 4.5275 4.4723 -1.6221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408244185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:31 Heat of formation + Delta-G solvation = -55.848333 kcal Electronic energy + Delta-G solvation = -23448.184212 eV Core-core repulsion = 20108.095237 eV Total energy + Delta-G solvation = -3340.088975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.35621 -38.70517 -36.71558 -33.98025 -33.66555 -32.28258 -31.31135 -30.26621 -28.68052 -26.89567 -24.52618 -23.45590 -22.71404 -21.98087 -20.98160 -20.55699 -18.66164 -17.35915 -16.63876 -16.20660 -15.98493 -15.30999 -14.83122 -14.64327 -14.36834 -13.77946 -13.66349 -13.59672 -13.42657 -13.34455 -13.26922 -12.91220 -12.39816 -11.84513 -11.82841 -11.68598 -11.55100 -11.32883 -11.10796 -10.90273 -10.83993 -10.79427 -10.60881 -10.51210 -10.28113 -10.03479 -9.87219 -9.80144 -9.20327 -8.64428 -8.27209 -6.76230 -5.90490 -3.34223 2.91339 3.10393 3.30437 3.39312 3.41407 4.00970 4.40090 4.44031 4.54434 4.76916 4.84903 5.01388 5.07670 5.17399 5.21413 5.23024 5.30905 5.44163 5.58127 5.66487 5.70561 5.75190 5.81453 5.83705 5.90074 5.95506 6.02834 6.07715 6.10931 6.18061 6.23266 6.29272 6.40087 6.72410 6.82028 6.94409 7.16144 7.39028 7.68687 7.86564 8.30988 8.54858 9.07592 9.69949 10.26681 11.17410 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031836 B = 0.004125 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.284276 B = 6785.534854 C = 7370.895248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.072 3.928 4 H 0.069 0.931 5 C -0.150 4.150 6 C -0.144 4.144 7 C 0.063 3.937 8 H 0.091 0.909 9 C 0.516 3.484 10 O -0.540 6.540 11 N -0.594 5.594 12 C 0.097 3.903 13 C 0.132 3.868 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.159 3.841 24 C 0.074 3.926 25 O -0.343 6.343 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.024 0.976 38 H 0.068 0.932 39 H 0.254 0.746 40 H 0.101 0.899 41 H 0.024 0.976 42 H 0.065 0.935 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 -5.597 9.463 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.014 3.986 4 H 0.086 0.914 5 C -0.188 4.188 6 C -0.182 4.182 7 C 0.002 3.998 8 H 0.109 0.891 9 C 0.303 3.697 10 O -0.417 6.417 11 N -0.327 5.327 12 C -0.027 4.027 13 C 0.005 3.995 14 N -0.314 5.314 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.032 3.968 24 C -0.050 4.050 25 O -0.262 6.262 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.042 0.958 42 H 0.083 0.917 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.492 -5.918 9.009 15.042 hybrid contribution 0.906 0.870 0.103 1.260 sum -9.586 -5.048 9.112 14.156 Atomic orbital electron populations 1.21724 0.95356 1.01356 1.02334 1.21708 0.96842 0.94796 1.02511 1.22861 0.94148 0.94176 0.87382 0.91353 1.23016 0.95221 1.02071 0.98503 1.23193 0.97102 0.99768 0.98096 1.22923 0.88083 0.94599 0.94235 0.89132 1.20081 0.80850 0.79555 0.89244 1.90656 1.39757 1.51607 1.59687 1.47962 1.34103 1.41191 1.09489 1.22203 1.00063 1.00330 0.80092 1.21322 0.87872 0.95929 0.94390 1.44003 1.37868 1.47616 1.01935 1.19262 0.94411 1.12766 1.11954 0.91383 1.25058 0.96066 0.98191 1.00242 1.70021 1.19919 1.32568 1.32147 0.86206 0.79881 0.82905 0.77683 1.20191 1.21472 1.21685 1.21168 0.90714 0.99433 0.85486 1.22842 0.92695 0.96991 0.92509 1.89000 1.41158 1.56399 1.39623 0.93036 0.91759 0.92957 0.91069 0.90948 0.90311 0.90028 0.89858 0.88599 0.89963 0.91844 0.95831 0.91400 0.93548 0.88155 0.95780 0.91680 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.82 37.16 0.37 -1.13 16 2 C -0.12 -1.23 5.42 -26.73 -0.14 -1.37 16 3 C 0.07 0.82 3.41 -26.15 -0.09 0.73 16 4 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 5 C -0.15 -1.54 6.64 -25.21 -0.17 -1.70 16 6 C -0.14 -1.86 5.93 -24.73 -0.15 -2.00 16 7 C 0.06 0.93 2.75 -26.83 -0.07 0.85 16 8 H 0.09 1.17 7.61 -51.93 -0.40 0.77 16 9 C 0.52 9.53 7.11 -10.98 -0.08 9.45 16 10 O -0.54 -11.79 15.97 -13.48 -0.22 -12.01 16 11 N -0.59 -10.82 2.95 -172.47 -0.51 -11.33 16 12 C 0.10 1.80 6.59 -3.60 -0.02 1.78 16 13 C 0.13 2.74 6.68 -3.56 -0.02 2.72 16 14 N -0.59 -14.12 2.97 -171.95 -0.51 -14.63 16 15 C -0.25 -6.65 9.57 -15.06 -0.14 -6.79 16 16 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 17 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 18 N -0.90 -24.76 11.20 55.49 0.62 -24.14 16 19 Si 0.90 20.74 29.59 -169.99 -5.03 15.71 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.16 3.46 5.52 -3.58 -0.02 3.44 16 24 C 0.07 1.28 6.16 -3.58 -0.02 1.26 16 25 O -0.34 -5.34 10.09 -54.27 -0.55 -5.88 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.77 7.89 -51.93 -0.41 0.36 16 28 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.76 7.70 -51.92 -0.40 0.36 16 33 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 34 H 0.10 1.17 6.45 -51.93 -0.34 0.84 16 35 H 0.08 1.52 6.99 -51.93 -0.36 1.15 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 1.34 7.93 -51.92 -0.41 0.93 16 39 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.10 2.41 5.99 -51.93 -0.31 2.10 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.04 4.17 -51.93 -0.22 0.82 16 LS Contribution 335.00 15.07 5.05 5.05 Total: -1.00 -30.99 335.00 -8.83 -39.82 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.04 Total: 0.21 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.65 Total: 7.21 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.40 Total: -50.10 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.76 Total: -17.89 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.99 -8.83 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408244185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.028 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds