Wall clock time and date at job start Tue Mar 31 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.33331 * 2 1 4 4 C 1.54907 * 110.36846 * 237.74607 * 2 1 3 5 5 C 1.55438 * 101.51734 * 204.04770 * 4 2 1 6 6 C 1.54318 * 103.04362 * 35.63935 * 5 4 2 7 7 H 1.08996 * 109.89000 * 97.11952 * 6 5 4 8 8 C 1.53005 * 110.01989 * 218.23384 * 6 5 4 9 9 N 1.47442 * 107.23228 * 337.71369 * 6 5 4 10 10 C 1.46908 * 110.99637 * 236.74352 * 9 6 5 11 11 C 1.50699 * 109.47241 * 283.53551 * 10 9 6 12 12 O 1.21278 * 119.99998 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99767 * 180.02562 * 11 10 9 14 14 C 1.47067 * 136.05853 * 359.62740 * 13 11 10 15 15 C 1.53760 * 87.88907 * 152.96554 * 14 13 11 16 16 O 1.42903 * 114.39421 * 272.67816 * 15 14 13 17 17 C 1.50701 * 114.26837 * 139.78895 * 15 14 13 18 18 H 1.07994 * 119.99937 * 266.47857 * 17 15 14 19 19 C 1.37876 * 119.99497 * 86.47776 * 17 15 14 20 20 N 1.31513 * 120.00176 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99670 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47211 * 59.99876 * 21 19 17 23 23 H 1.48497 * 109.47154 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47235 * 299.99775 * 21 19 17 25 25 C 1.47065 * 136.05534 * 180.02562 * 13 11 10 26 26 H 1.08998 * 109.47068 * 299.29751 * 1 2 3 27 27 H 1.09005 * 109.47088 * 59.29836 * 1 2 3 28 28 H 1.09002 * 109.47249 * 179.29621 * 1 2 3 29 29 H 1.09000 * 110.99393 * 322.07791 * 4 2 1 30 30 H 1.08999 * 110.99257 * 85.90013 * 4 2 1 31 31 H 1.09000 * 110.69564 * 277.24143 * 5 4 2 32 32 H 1.09005 * 110.83924 * 154.09676 * 5 4 2 33 33 H 1.08995 * 109.46729 * 176.81230 * 8 6 5 34 34 H 1.08998 * 109.46997 * 296.80777 * 8 6 5 35 35 H 1.08990 * 109.47330 * 56.80905 * 8 6 5 36 36 H 1.08999 * 109.47222 * 43.54076 * 10 9 6 37 37 H 1.09006 * 109.46563 * 163.53466 * 10 9 6 38 38 H 1.09001 * 113.46726 * 267.69928 * 14 13 11 39 39 H 1.09003 * 113.46794 * 38.13784 * 14 13 11 40 40 H 0.96697 * 113.99930 * 273.58737 * 16 15 14 41 41 H 0.97007 * 119.99957 * 180.02562 * 20 19 17 42 42 H 1.09005 * 113.46656 * 321.86124 * 25 13 11 43 43 H 1.08995 * 113.46997 * 92.30069 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0692 -0.7750 -1.2281 5 6 3.4812 -1.1968 -0.7335 6 6 3.2550 -1.4779 0.7669 7 1 3.1085 -2.5461 0.9261 8 6 4.4576 -0.9910 1.5780 9 7 2.0447 -0.7397 1.1720 10 6 2.3333 0.1737 2.2858 11 6 2.4406 -0.6137 3.5663 12 8 2.2919 -1.8172 3.5523 13 7 2.7019 0.0197 4.7269 14 6 2.9441 1.4091 5.1438 15 6 2.3987 1.0282 6.5301 16 8 0.9807 1.1490 6.6600 17 6 3.1564 1.6360 7.6822 18 1 3.9588 1.0858 8.1510 19 6 2.8251 2.8945 8.1378 20 7 1.8476 3.5642 7.5672 21 14 3.7647 3.6482 9.5655 22 1 5.2013 3.7629 9.2071 23 1 3.2184 4.9971 9.8606 24 1 3.6211 2.7834 10.7642 25 6 2.8774 -0.3753 6.1326 26 1 -0.3633 0.5029 0.8962 27 1 -0.3633 0.5247 -0.8837 28 1 -0.3634 -1.0276 -0.0126 29 1 1.4526 -1.6484 -1.4402 30 1 2.1369 -0.1255 -2.1008 31 1 4.1956 -0.3851 -0.8703 32 1 3.8193 -2.0966 -1.2475 33 1 4.2645 -1.1421 2.6401 34 1 5.3444 -1.5536 1.2863 35 1 4.6204 0.0693 1.3855 36 1 3.2741 0.6908 2.0972 37 1 1.5289 0.9039 2.3745 38 1 3.9993 1.6820 5.1526 39 1 2.3248 2.1348 4.6165 40 1 0.6827 2.0342 6.9103 41 1 1.6148 4.4497 7.8874 42 1 2.2013 -1.1701 6.4477 43 1 3.9150 -0.5724 6.4018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408321613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:43 Heat of formation + Delta-G solvation = -30.685871 kcal Electronic energy + Delta-G solvation = -23384.770178 eV Core-core repulsion = 20045.772329 eV Total energy + Delta-G solvation = -3338.997849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.21225 -39.02005 -37.05737 -33.96746 -32.83173 -32.19028 -32.04393 -28.98630 -28.12070 -26.46089 -25.08252 -24.65234 -23.86282 -21.09271 -20.23416 -19.21056 -18.10149 -17.36737 -16.45276 -16.31534 -15.80109 -15.26097 -14.98718 -14.72525 -14.14240 -13.82886 -13.75320 -13.22490 -13.02030 -12.91351 -12.56693 -12.36897 -12.21237 -11.88419 -11.85733 -11.61202 -11.54828 -11.34667 -11.07695 -11.04855 -10.99177 -10.76079 -10.73881 -10.65230 -10.49585 -10.25891 -9.56905 -9.11239 -8.76890 -8.39427 -8.08911 -7.77915 -6.40501 -4.50961 3.15344 3.21399 3.23125 3.31240 3.42312 4.09405 4.18780 4.55760 4.59592 4.81622 4.84424 5.11845 5.13594 5.27244 5.31986 5.37176 5.46281 5.54465 5.61860 5.64283 5.67661 5.70838 5.76022 5.88309 5.94679 5.95956 6.08512 6.20240 6.22389 6.31604 6.37717 6.43298 6.51862 6.64807 6.69528 7.09099 7.13642 7.16558 7.62585 7.81195 8.51680 8.60073 8.91111 9.20545 9.50271 10.65985 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030142 B = 0.003981 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.702205 B = 7032.107411 C = 7248.667312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 H 0.053 0.947 4 C -0.123 4.123 5 C -0.140 4.140 6 C 0.079 3.921 7 H 0.089 0.911 8 C -0.175 4.175 9 N -0.502 5.502 10 C 0.031 3.969 11 C 0.541 3.459 12 O -0.545 6.545 13 N -0.640 5.640 14 C 0.071 3.929 15 C 0.241 3.759 16 O -0.570 6.570 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.909 3.091 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.108 3.892 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.393 0.607 41 H 0.274 0.726 42 H 0.065 0.935 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.698 -2.237 -14.082 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.042 4.042 3 H 0.071 0.929 4 C -0.161 4.161 5 C -0.179 4.179 6 C -0.029 4.029 7 H 0.107 0.893 8 C -0.232 4.232 9 N -0.227 5.227 10 C -0.100 4.100 11 C 0.330 3.670 12 O -0.423 6.423 13 N -0.375 5.375 14 C -0.052 4.052 15 C 0.199 3.801 16 O -0.383 6.383 17 C -0.572 4.572 18 H 0.090 0.910 19 C -0.130 4.130 20 N -0.539 5.539 21 Si 0.736 3.264 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.014 4.014 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.250 0.750 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.093 -3.772 -14.269 14.907 hybrid contribution 1.156 1.810 0.593 2.228 sum 3.249 -1.962 -13.677 14.193 Atomic orbital electron populations 1.21704 0.93840 1.02516 1.01247 1.22590 0.96268 0.95901 0.89408 0.92903 1.22770 0.96118 1.00325 0.96858 1.22970 0.97200 1.01592 0.96111 1.22325 0.88157 0.99886 0.92561 0.89338 1.22467 0.98198 1.00535 1.02033 1.63346 1.28955 1.25129 1.05242 1.22156 1.02404 0.94969 0.90516 1.19749 0.76738 0.87511 0.82998 1.90636 1.51553 1.14337 1.85818 1.49741 1.68667 1.12255 1.06847 1.24221 1.00500 0.82017 0.98501 1.19576 0.80921 0.89490 0.90153 1.86054 1.20989 1.39324 1.91974 1.21416 1.17985 1.01329 1.16509 0.91014 1.25071 0.94818 0.96439 0.96671 1.69258 1.29200 1.13827 1.41649 0.86373 0.79905 0.78183 0.81971 1.19893 1.20986 1.19812 1.23279 1.00113 0.99993 0.78012 0.92502 0.92580 0.91854 0.90498 0.90989 0.91547 0.90884 0.91107 0.92167 0.92704 0.91110 0.88785 0.90295 0.91969 0.75042 0.91537 0.91662 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.59 37.16 0.36 -1.20 16 2 C 0.07 0.80 2.95 -66.19 -0.19 0.61 16 3 H 0.05 0.62 7.81 -51.93 -0.41 0.21 16 4 C -0.12 -1.23 6.52 -24.43 -0.16 -1.39 16 5 C -0.14 -1.46 6.48 -24.75 -0.16 -1.62 16 6 C 0.08 1.08 3.38 -66.72 -0.23 0.86 16 7 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 8 C -0.17 -2.40 7.69 37.16 0.29 -2.11 16 9 N -0.50 -7.65 4.39 -216.95 -0.95 -8.60 16 10 C 0.03 0.50 4.68 -4.97 -0.02 0.48 16 11 C 0.54 11.13 5.94 -10.99 -0.07 11.07 16 12 O -0.55 -12.75 16.12 5.56 0.09 -12.66 16 13 N -0.64 -13.63 3.69 -185.02 -0.68 -14.31 16 14 C 0.07 1.51 7.86 -8.37 -0.07 1.44 16 15 C 0.24 5.78 1.58 -91.11 -0.14 5.63 16 16 O -0.57 -14.84 13.55 -35.23 -0.48 -15.32 16 17 C -0.53 -13.30 8.70 -34.44 -0.30 -13.60 16 18 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.07 1.78 5.39 -17.82 -0.10 1.69 16 20 N -0.90 -22.58 11.01 55.43 0.61 -21.97 16 21 Si 0.91 19.22 29.54 -169.99 -5.02 14.20 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 C 0.11 2.40 8.02 -8.49 -0.07 2.33 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.20 4.90 -51.93 -0.25 0.94 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.70 6.57 -51.93 -0.34 0.35 16 36 H 0.07 1.06 5.46 -51.93 -0.28 0.78 16 37 H 0.09 1.53 7.98 -51.93 -0.41 1.11 16 38 H 0.08 1.59 8.10 -51.93 -0.42 1.16 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.39 10.28 6.32 45.56 0.29 10.57 16 41 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 42 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -28.22 338.93 -8.61 -36.83 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -6.43 Total: 12.54 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.86 Total: 4.18 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -1.02 Total: -44.89 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.39 Total: -27.98 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.22 -8.61 -36.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408321613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.142 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds