Wall clock time and date at job start Tue Mar 31 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.36571 * 2 1 4 4 C 1.54374 * 110.51196 * 237.57881 * 2 1 3 5 5 C 1.54263 * 105.06025 * 217.31810 * 4 2 1 6 6 C 1.54381 * 105.06078 * 0.02562 * 5 4 2 7 7 H 1.09003 * 110.40975 * 265.07120 * 6 5 4 8 8 C 1.52997 * 110.41186 * 142.63184 * 6 5 4 9 9 N 1.48559 * 104.59342 * 23.84847 * 6 5 4 10 10 C 1.46907 * 110.99882 * 200.96103 * 9 6 5 11 11 C 1.50701 * 109.47085 * 62.42918 * 10 9 6 12 12 O 1.21284 * 119.99826 * 352.97710 * 11 10 9 13 13 N 1.34772 * 119.99818 * 172.97907 * 11 10 9 14 14 C 1.47067 * 136.05883 * 359.62557 * 13 11 10 15 15 C 1.53245 * 88.07960 * 207.20561 * 14 13 11 16 16 O 1.42899 * 114.01506 * 87.71958 * 15 14 13 17 17 C 1.50700 * 114.50504 * 220.45202 * 15 14 13 18 18 H 1.08002 * 119.99637 * 93.84706 * 17 15 14 19 19 C 1.37878 * 120.00413 * 273.85485 * 17 15 14 20 20 N 1.31515 * 119.99860 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 119.99867 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47379 * 59.99883 * 21 19 17 23 23 H 1.48505 * 109.46922 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47020 * 299.99299 * 21 19 17 25 25 C 1.47066 * 136.05380 * 180.02562 * 13 11 10 26 26 H 1.09005 * 109.47400 * 303.00900 * 1 2 3 27 27 H 1.09000 * 109.47301 * 63.00773 * 1 2 3 28 28 H 1.09002 * 109.47551 * 183.01280 * 1 2 3 29 29 H 1.09002 * 110.32436 * 98.42749 * 4 2 1 30 30 H 1.09002 * 110.32552 * 336.21127 * 4 2 1 31 31 H 1.08993 * 110.32453 * 241.10517 * 5 4 2 32 32 H 1.09001 * 110.32215 * 118.89333 * 5 4 2 33 33 H 1.08996 * 109.47050 * 61.45452 * 8 6 5 34 34 H 1.09006 * 109.46978 * 181.44849 * 8 6 5 35 35 H 1.09000 * 109.47176 * 301.44727 * 8 6 5 36 36 H 1.08996 * 109.47091 * 182.42824 * 10 9 6 37 37 H 1.09004 * 109.46757 * 302.42826 * 10 9 6 38 38 H 1.08997 * 113.46711 * 321.93439 * 14 13 11 39 39 H 1.08996 * 113.46706 * 92.38435 * 14 13 11 40 40 H 0.96697 * 114.00281 * 86.38485 * 16 15 14 41 41 H 0.96999 * 119.99776 * 180.02562 * 20 19 17 42 42 H 1.09003 * 113.46749 * 267.61992 * 25 13 11 43 43 H 1.09007 * 113.46948 * 38.06250 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0709 -0.7752 -1.2205 5 6 3.3209 -1.5162 -0.7028 6 6 3.4297 -1.1269 0.7871 7 1 4.1063 -0.2813 0.9107 8 6 3.9079 -2.3201 1.6169 9 7 2.0476 -0.7457 1.1763 10 6 2.0534 0.1021 2.3760 11 6 2.7904 1.3833 2.0821 12 8 3.3728 1.5195 1.0270 13 7 2.8024 2.3776 2.9918 14 6 2.2352 2.5944 4.3313 15 6 2.2399 4.0976 4.0337 16 8 1.0584 4.5646 3.3795 17 6 2.6601 4.9631 5.1936 18 1 3.6916 5.2665 5.2950 19 6 1.7277 5.3676 6.1253 20 7 0.4715 4.9984 6.0016 21 14 2.2488 6.4399 7.5634 22 1 2.8194 7.7117 7.0515 23 1 1.0680 6.7347 8.4144 24 1 3.2731 5.7260 8.3675 25 6 3.3826 3.7262 3.0789 26 1 -0.3634 0.5599 0.8618 27 1 -0.3634 0.4664 -0.9157 28 1 -0.3634 -1.0262 0.0540 29 1 2.3439 -0.0836 -2.0176 30 1 1.3276 -1.4891 -1.5754 31 1 4.2073 -1.1884 -1.2458 32 1 3.1911 -2.5938 -0.8036 33 1 4.8983 -2.6243 1.2785 34 1 3.9545 -2.0361 2.6683 35 1 3.2115 -3.1497 1.4952 36 1 1.0274 0.3311 2.6640 37 1 2.5506 -0.4245 3.1906 38 1 1.2341 2.1802 4.4510 39 1 2.9092 2.3098 5.1393 40 1 0.3403 4.7978 3.9836 41 1 -0.1845 5.2833 6.6569 42 1 4.3655 3.7463 3.5496 43 1 3.3550 4.2724 2.1359 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408321614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:45 Heat of formation + Delta-G solvation = -36.543649 kcal Electronic energy + Delta-G solvation = -23550.632734 eV Core-core repulsion = 20211.380873 eV Total energy + Delta-G solvation = -3339.251861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37053 -38.91734 -36.88737 -34.05639 -32.45993 -32.24815 -32.20302 -29.10465 -28.20013 -26.26007 -25.18048 -24.48621 -23.69435 -20.70369 -20.15864 -19.79930 -18.21681 -17.44399 -16.52919 -15.82292 -15.40440 -15.06902 -15.00302 -14.94783 -14.30886 -14.13641 -13.62418 -13.13883 -13.06713 -12.73754 -12.65757 -12.37165 -12.11523 -11.94059 -11.76784 -11.59538 -11.47217 -11.30405 -11.08262 -10.98668 -10.79993 -10.65547 -10.52080 -10.48060 -10.30946 -10.09212 -10.05866 -9.42228 -8.83763 -8.47708 -8.06356 -7.78614 -6.44201 -4.55052 3.06244 3.13319 3.19572 3.21639 3.54254 4.09144 4.14728 4.73085 4.77997 4.88596 4.99168 5.20085 5.33565 5.44838 5.53702 5.59371 5.61068 5.67600 5.74502 5.79405 5.84135 5.88730 5.90252 6.04883 6.06980 6.14684 6.15593 6.23583 6.34164 6.34845 6.42963 6.48420 6.54003 6.56443 6.64120 7.05252 7.07618 7.16594 7.58755 7.76129 8.44349 8.49077 8.65969 9.16575 9.44423 10.62336 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.004092 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.322228 B = 6841.143129 C = 7101.068050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.113 4.113 5 C -0.113 4.113 6 C 0.041 3.959 7 H 0.085 0.915 8 C -0.135 4.135 9 N -0.482 5.482 10 C 0.030 3.970 11 C 0.505 3.495 12 O -0.560 6.560 13 N -0.630 5.630 14 C 0.071 3.929 15 C 0.241 3.759 16 O -0.572 6.572 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.909 3.091 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.104 3.896 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.394 0.606 41 H 0.275 0.725 42 H 0.084 0.916 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 -10.705 -5.932 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 H 0.110 0.890 4 C -0.151 4.151 5 C -0.151 4.151 6 C -0.066 4.066 7 H 0.102 0.898 8 C -0.193 4.193 9 N -0.205 5.205 10 C -0.102 4.102 11 C 0.294 3.706 12 O -0.442 6.442 13 N -0.363 5.363 14 C -0.053 4.053 15 C 0.199 3.801 16 O -0.385 6.385 17 C -0.574 4.574 18 H 0.090 0.910 19 C -0.130 4.130 20 N -0.539 5.539 21 Si 0.736 3.264 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.019 4.019 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.251 0.749 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.935 -11.378 -6.930 13.462 hybrid contribution 0.320 1.295 1.328 1.882 sum 2.255 -10.083 -5.602 11.753 Atomic orbital electron populations 1.21728 0.94598 1.01718 1.01336 1.23082 0.95135 0.99410 0.89556 0.88998 1.22232 0.97090 0.98611 0.97158 1.22235 0.97904 0.99879 0.95077 1.22918 0.91100 0.98235 0.94391 0.89768 1.21735 1.00293 0.97829 0.99466 1.65727 1.18029 1.34153 1.02592 1.22275 1.01888 0.90275 0.95807 1.21344 0.81249 0.84611 0.83382 1.90537 1.47482 1.81222 1.25005 1.49943 1.51867 1.16058 1.18438 1.24186 0.97676 1.01188 0.82203 1.19475 0.83509 0.88359 0.88759 1.86043 1.26391 1.86670 1.39438 1.21392 0.96054 1.32431 1.07479 0.91011 1.25074 0.94689 0.95065 0.98130 1.69249 1.01966 1.45354 1.37290 0.86361 0.78227 0.80650 0.81142 1.19816 1.20936 1.19847 1.23331 0.98242 0.80301 1.00003 0.92897 0.92592 0.92355 0.91830 0.91706 0.91854 0.91691 0.92636 0.93108 0.92229 0.88059 0.88209 0.91644 0.90004 0.74944 0.91467 0.89784 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.32 37.16 0.35 -1.52 16 2 C 0.04 0.55 2.49 -66.06 -0.16 0.39 16 3 H 0.09 1.74 4.96 -51.93 -0.26 1.48 16 4 C -0.11 -1.49 6.55 -25.35 -0.17 -1.66 16 5 C -0.11 -1.44 6.55 -25.35 -0.17 -1.61 16 6 C 0.04 0.60 2.53 -66.07 -0.17 0.43 16 7 H 0.08 1.46 5.40 -51.93 -0.28 1.18 16 8 C -0.14 -1.63 9.32 37.16 0.35 -1.28 16 9 N -0.48 -7.31 5.01 -215.76 -1.08 -8.39 16 10 C 0.03 0.47 5.66 -4.97 -0.03 0.44 16 11 C 0.50 9.83 7.10 -10.99 -0.08 9.76 16 12 O -0.56 -11.96 12.19 5.55 0.07 -11.89 16 13 N -0.63 -12.99 3.69 -185.37 -0.68 -13.67 16 14 C 0.07 1.47 7.83 -8.63 -0.07 1.40 16 15 C 0.24 5.67 1.57 -91.40 -0.14 5.53 16 16 O -0.57 -14.60 13.53 -35.23 -0.48 -15.07 16 17 C -0.54 -13.17 8.70 -34.44 -0.30 -13.47 16 18 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.07 1.78 5.39 -17.82 -0.10 1.69 16 20 N -0.90 -22.34 11.01 55.43 0.61 -21.72 16 21 Si 0.91 19.07 29.54 -169.99 -5.02 14.05 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 C 0.10 2.24 8.03 -8.51 -0.07 2.17 16 26 H 0.05 0.77 7.72 -51.93 -0.40 0.37 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.76 7.86 -51.93 -0.41 0.36 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.74 7.86 -51.93 -0.41 0.33 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.61 7.45 -51.93 -0.39 0.22 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.60 7.71 -51.93 -0.40 1.20 16 37 H 0.10 1.45 7.38 -51.93 -0.38 1.07 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 40 H 0.39 10.14 6.32 45.56 0.29 10.43 16 41 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 42 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 43 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -26.54 337.46 -8.66 -35.20 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -6.41 Total: 14.14 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -0.75 Total: 2.28 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -1.16 Total: -43.78 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.41 Total: -26.97 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.54 -8.66 -35.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408321614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.345 kcal (2) G-P(sol) polarization free energy of solvation -26.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds