Wall clock time and date at job start Tue Mar 31 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.36571 * 2 1 4 4 C 1.54374 * 110.51196 * 237.57881 * 2 1 3 5 5 C 1.54263 * 105.06025 * 217.31810 * 4 2 1 6 6 C 1.54381 * 105.06078 * 0.02562 * 5 4 2 7 7 H 1.09003 * 110.40975 * 265.07120 * 6 5 4 8 8 C 1.52997 * 110.41186 * 142.63184 * 6 5 4 9 9 N 1.48559 * 104.59342 * 23.84847 * 6 5 4 10 10 C 1.46907 * 110.99882 * 200.96103 * 9 6 5 11 11 C 1.50701 * 109.47085 * 62.42918 * 10 9 6 12 12 O 1.21284 * 119.99826 * 352.97710 * 11 10 9 13 13 N 1.34772 * 119.99818 * 172.97907 * 11 10 9 14 14 C 1.47067 * 136.05883 * 359.62557 * 13 11 10 15 15 C 1.53245 * 88.07960 * 207.20561 * 14 13 11 16 16 O 1.42899 * 114.01506 * 87.71958 * 15 14 13 17 17 C 1.50700 * 114.50504 * 220.45202 * 15 14 13 18 18 H 1.08002 * 119.99637 * 93.84706 * 17 15 14 19 19 C 1.37878 * 120.00413 * 273.85485 * 17 15 14 20 20 N 1.31515 * 119.99860 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 119.99867 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47379 * 59.99883 * 21 19 17 23 23 H 1.48505 * 109.46922 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47020 * 299.99299 * 21 19 17 25 25 C 1.47066 * 136.05380 * 180.02562 * 13 11 10 26 26 H 1.09005 * 109.47400 * 303.00900 * 1 2 3 27 27 H 1.09000 * 109.47301 * 63.00773 * 1 2 3 28 28 H 1.09002 * 109.47551 * 183.01280 * 1 2 3 29 29 H 1.09002 * 110.32436 * 98.42749 * 4 2 1 30 30 H 1.09002 * 110.32552 * 336.21127 * 4 2 1 31 31 H 1.08993 * 110.32453 * 241.10517 * 5 4 2 32 32 H 1.09001 * 110.32215 * 118.89333 * 5 4 2 33 33 H 1.08996 * 109.47050 * 61.45452 * 8 6 5 34 34 H 1.09006 * 109.46978 * 181.44849 * 8 6 5 35 35 H 1.09000 * 109.47176 * 301.44727 * 8 6 5 36 36 H 1.08996 * 109.47091 * 182.42824 * 10 9 6 37 37 H 1.09004 * 109.46757 * 302.42826 * 10 9 6 38 38 H 1.08997 * 113.46711 * 321.93439 * 14 13 11 39 39 H 1.08996 * 113.46706 * 92.38435 * 14 13 11 40 40 H 0.96697 * 114.00281 * 86.38485 * 16 15 14 41 41 H 0.96999 * 119.99776 * 180.02562 * 20 19 17 42 42 H 1.09003 * 113.46749 * 267.61992 * 25 13 11 43 43 H 1.09007 * 113.46948 * 38.06250 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0709 -0.7752 -1.2205 5 6 3.3209 -1.5162 -0.7028 6 6 3.4297 -1.1269 0.7871 7 1 4.1063 -0.2813 0.9107 8 6 3.9079 -2.3201 1.6169 9 7 2.0476 -0.7457 1.1763 10 6 2.0534 0.1021 2.3760 11 6 2.7904 1.3833 2.0821 12 8 3.3728 1.5195 1.0270 13 7 2.8024 2.3776 2.9918 14 6 2.2352 2.5944 4.3313 15 6 2.2399 4.0976 4.0337 16 8 1.0584 4.5646 3.3795 17 6 2.6601 4.9631 5.1936 18 1 3.6916 5.2665 5.2950 19 6 1.7277 5.3676 6.1253 20 7 0.4715 4.9984 6.0016 21 14 2.2488 6.4399 7.5634 22 1 2.8194 7.7117 7.0515 23 1 1.0680 6.7347 8.4144 24 1 3.2731 5.7260 8.3675 25 6 3.3826 3.7262 3.0789 26 1 -0.3634 0.5599 0.8618 27 1 -0.3634 0.4664 -0.9157 28 1 -0.3634 -1.0262 0.0540 29 1 2.3439 -0.0836 -2.0176 30 1 1.3276 -1.4891 -1.5754 31 1 4.2073 -1.1884 -1.2458 32 1 3.1911 -2.5938 -0.8036 33 1 4.8983 -2.6243 1.2785 34 1 3.9545 -2.0361 2.6683 35 1 3.2115 -3.1497 1.4952 36 1 1.0274 0.3311 2.6640 37 1 2.5506 -0.4245 3.1906 38 1 1.2341 2.1802 4.4510 39 1 2.9092 2.3098 5.1393 40 1 0.3403 4.7978 3.9836 41 1 -0.1845 5.2833 6.6569 42 1 4.3655 3.7463 3.5496 43 1 3.3550 4.2724 2.1359 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408321614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:44 Heat of formation + Delta-G solvation = -55.011174 kcal Electronic energy + Delta-G solvation = -23551.433546 eV Core-core repulsion = 20211.380873 eV Total energy + Delta-G solvation = -3340.052673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82212 -40.45889 -38.39294 -35.90817 -34.14015 -33.54941 -33.45570 -30.71985 -29.28802 -27.86175 -26.89900 -26.01474 -24.73211 -22.24345 -21.26721 -21.26027 -19.89209 -19.22878 -18.04967 -17.27881 -17.04159 -16.59180 -16.57082 -16.11393 -15.94829 -15.43834 -15.16505 -14.71042 -14.32360 -14.16551 -14.02105 -13.76886 -13.55148 -13.42305 -13.08367 -12.94234 -12.78127 -12.74730 -12.57510 -12.36060 -12.22787 -12.17367 -11.92820 -11.71872 -11.65996 -11.54748 -11.20785 -11.18642 -10.69962 -10.29184 -9.61819 -9.27680 -8.28435 -6.46240 1.48044 1.49723 1.52673 1.57798 1.94955 2.40035 2.90321 2.93164 3.45250 3.64490 3.75581 3.78521 4.11771 4.15810 4.21731 4.29764 4.38359 4.46177 4.51293 4.54370 4.58393 4.69547 4.69964 4.77554 4.83022 4.86224 4.86891 4.91002 5.00459 5.01406 5.14843 5.21123 5.21937 5.28070 5.36168 5.43401 5.71216 5.88774 5.90123 5.93968 6.59381 6.85187 7.07292 7.28017 7.46880 8.77255 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.004092 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.322228 B = 6841.143129 C = 7101.068050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.111 4.111 5 C -0.111 4.111 6 C 0.036 3.964 7 H 0.052 0.948 8 C -0.129 4.129 9 N -0.474 5.474 10 C 0.037 3.963 11 C 0.500 3.500 12 O -0.580 6.580 13 N -0.635 5.635 14 C 0.087 3.913 15 C 0.220 3.780 16 O -0.588 6.588 17 C -0.555 4.555 18 H 0.074 0.926 19 C 0.034 3.966 20 N -0.917 5.917 21 Si 0.970 3.030 22 H -0.275 1.275 23 H -0.282 1.282 24 H -0.266 1.266 25 C 0.105 3.895 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.389 0.611 41 H 0.277 0.723 42 H 0.101 0.899 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 -12.356 -5.543 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.072 4.072 7 H 0.070 0.930 8 C -0.187 4.187 9 N -0.196 5.196 10 C -0.095 4.095 11 C 0.291 3.709 12 O -0.463 6.463 13 N -0.368 5.368 14 C -0.036 4.036 15 C 0.178 3.822 16 O -0.401 6.401 17 C -0.593 4.593 18 H 0.092 0.908 19 C -0.166 4.166 20 N -0.558 5.558 21 Si 0.795 3.205 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.191 1.191 25 C -0.018 4.018 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.245 0.755 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.148 -13.049 -6.555 14.760 hybrid contribution 0.267 1.830 1.125 2.165 sum 2.415 -11.219 -5.430 12.695 Atomic orbital electron populations 1.21683 0.93331 1.02510 1.01247 1.23063 0.96190 0.97695 0.90848 0.92912 1.22246 0.97777 0.98772 0.96077 1.22264 0.97736 1.01110 0.93741 1.22964 0.89911 0.98106 0.96188 0.93020 1.21695 1.01272 0.96866 0.98825 1.65819 1.18501 1.33122 1.02194 1.22333 1.01547 0.88654 0.96930 1.22082 0.80935 0.85252 0.82652 1.90543 1.48277 1.81733 1.25728 1.50004 1.52141 1.15977 1.18667 1.23948 0.97956 0.99107 0.82627 1.19757 0.83302 0.89873 0.89244 1.86028 1.27008 1.87083 1.39972 1.21630 0.96376 1.33249 1.08061 0.90829 1.25754 0.94672 0.95980 1.00220 1.69313 1.02619 1.45903 1.37925 0.85416 0.77898 0.78853 0.78338 1.20061 1.20735 1.19083 1.23303 0.98563 0.81028 0.98936 0.94345 0.91579 0.90820 0.92058 0.89683 0.91754 0.89501 0.91204 0.93356 0.91163 0.87801 0.86331 0.91761 0.88682 0.75457 0.91280 0.88112 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.32 71.98 0.67 -2.74 16 2 C 0.03 0.91 2.49 45.05 0.11 1.02 16 3 H 0.05 2.04 4.96 -2.38 -0.01 2.03 16 4 C -0.11 -2.74 6.55 31.49 0.21 -2.53 16 5 C -0.11 -2.60 6.55 31.49 0.21 -2.40 16 6 C 0.04 1.00 2.53 45.06 0.11 1.11 16 7 H 0.05 1.79 5.40 -2.39 -0.01 1.77 16 8 C -0.13 -2.78 9.32 71.98 0.67 -2.11 16 9 N -0.47 -13.73 5.01 -836.52 -4.19 -17.93 16 10 C 0.04 1.16 5.66 85.56 0.48 1.65 16 11 C 0.50 19.58 7.10 87.66 0.62 20.20 16 12 O -0.58 -25.27 12.19 -3.04 -0.04 -25.31 16 13 N -0.63 -26.26 3.69 -859.27 -3.17 -29.43 16 14 C 0.09 3.59 7.83 83.10 0.65 4.24 16 15 C 0.22 10.44 1.57 -11.30 -0.02 10.42 16 16 O -0.59 -30.69 13.53 -148.98 -2.02 -32.71 16 17 C -0.56 -27.27 8.70 25.60 0.22 -27.04 16 18 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 19 C 0.03 1.66 5.39 84.65 0.46 2.12 16 20 N -0.92 -45.54 11.01 21.45 0.24 -45.30 16 21 Si 0.97 38.55 29.54 68.60 2.03 40.58 16 22 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 25 C 0.10 4.58 8.03 83.17 0.67 5.25 16 26 H 0.04 1.09 7.72 -2.38 -0.02 1.08 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.76 7.86 -2.39 -0.02 1.74 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.67 7.86 -2.39 -0.02 1.65 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.05 7.45 -2.38 -0.02 1.04 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 3.21 7.71 -2.39 -0.02 3.19 16 37 H 0.12 3.25 7.38 -2.39 -0.02 3.23 16 38 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.10 3.66 8.10 -2.39 -0.02 3.64 16 40 H 0.39 20.55 6.32 -74.06 -0.47 20.08 16 41 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 42 H 0.10 4.00 8.10 -2.39 -0.02 3.98 16 43 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -56.57 337.46 -1.56 -58.13 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: 0.53 Total: 42.78 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.07 Total: 9.19 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -7.13 Total: -92.66 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -2.05 Total: -58.01 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -56.57 -1.56 -58.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408321614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.115 kcal (2) G-P(sol) polarization free energy of solvation -56.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds