Wall clock time and date at job start Tue Mar 31 2020 02:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99829 * 2 1 4 4 N 1.46902 * 109.47173 * 124.12145 * 3 2 1 5 5 C 1.46895 * 111.00394 * 299.17310 * 4 3 2 6 6 C 1.50705 * 109.46947 * 288.12361 * 5 4 3 7 7 H 1.07999 * 119.99891 * 354.71626 * 6 5 4 8 8 C 1.37872 * 120.00277 * 174.71605 * 6 5 4 9 9 N 1.31518 * 119.99989 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00194 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47366 * 89.99914 * 10 8 6 12 12 H 1.48498 * 109.47301 * 210.00036 * 10 8 6 13 13 H 1.48504 * 109.47290 * 329.99805 * 10 8 6 14 14 C 1.46911 * 110.99787 * 63.12464 * 4 3 2 15 15 C 1.52999 * 109.47031 * 66.04293 * 14 4 3 16 16 C 1.50700 * 109.46922 * 180.02562 * 15 14 4 17 17 O 1.21280 * 120.00119 * 0.02562 * 16 15 14 18 18 N 1.34771 * 119.99954 * 179.72747 * 16 15 14 19 19 C 1.47148 * 120.98289 * 359.97438 * 18 16 15 20 20 C 1.53712 * 108.16350 * 129.43499 * 19 18 16 21 21 O 1.42960 * 109.15062 * 52.53798 * 20 19 18 22 22 C 1.42963 * 114.16051 * 297.29021 * 21 20 19 23 23 C 1.47158 * 120.98090 * 180.27474 * 18 16 15 24 24 H 1.07998 * 120.00227 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99892 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00079 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.47442 * 4.12682 * 3 2 1 28 28 H 1.09001 * 109.47327 * 244.12484 * 3 2 1 29 29 H 1.09002 * 109.47267 * 48.11733 * 5 4 3 30 30 H 1.09002 * 109.47566 * 168.12362 * 5 4 3 31 31 H 0.96997 * 120.00265 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46488 * 306.04438 * 14 4 3 33 33 H 1.08998 * 109.46796 * 186.04838 * 14 4 3 34 34 H 1.09001 * 109.46917 * 60.00103 * 15 14 4 35 35 H 1.08996 * 109.47424 * 300.00347 * 15 14 4 36 36 H 1.09009 * 109.67990 * 249.21215 * 19 18 16 37 37 H 1.09005 * 109.68486 * 9.76198 * 19 18 16 38 38 H 1.09004 * 109.65458 * 292.56922 * 20 19 18 39 39 H 1.09002 * 109.48505 * 172.39932 * 20 19 18 40 40 H 1.08996 * 109.51404 * 302.65499 * 22 21 20 41 41 H 1.09002 * 109.55033 * 182.53258 * 22 21 20 42 42 H 1.09000 * 109.68446 * 350.23719 * 23 18 16 43 43 H 1.08995 * 109.67834 * 110.79252 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9811 1.3408 1.1466 5 6 2.2447 1.2409 2.4137 6 6 1.5050 2.5291 2.6677 7 1 1.6420 3.3702 2.0043 8 6 0.6534 2.6338 3.7469 9 7 0.4862 1.6093 4.5545 10 14 -0.2629 4.2308 4.0621 11 1 -1.5669 4.2018 3.3522 12 1 -0.4965 4.3880 5.5201 13 1 0.5463 5.3723 3.5646 14 6 3.9952 0.2830 1.0423 15 6 4.9016 0.5620 -0.1583 16 6 5.9415 -0.5234 -0.2657 17 8 5.9559 -1.4311 0.5386 18 7 6.8517 -0.4887 -1.2589 19 6 6.8498 0.5984 -2.2506 20 6 8.2743 1.1689 -2.3390 21 8 9.1941 0.0996 -2.5720 22 6 9.2445 -0.8683 -1.5210 23 6 7.8729 -1.5405 -1.3877 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3574 2.1324 0.0740 28 1 2.6335 1.3956 -0.9246 29 1 1.5321 0.4181 2.3559 30 1 2.9458 1.0578 3.2280 31 1 -0.1126 1.6831 5.3139 32 1 3.5029 -0.6805 0.9097 33 1 4.5941 0.2628 1.9528 34 1 5.3939 1.5255 -0.0257 35 1 4.3028 0.5823 -1.0688 36 1 6.5465 0.2084 -3.2223 37 1 6.1586 1.3807 -1.9365 38 1 8.5274 1.6698 -1.4045 39 1 8.3299 1.8825 -3.1612 40 1 9.5011 -0.3749 -0.5836 41 1 9.9976 -1.6210 -1.7542 42 1 7.8597 -2.1754 -0.5018 43 1 7.6708 -2.1417 -2.2740 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428839230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:27 Heat of formation + Delta-G solvation = -48.502773 kcal Electronic energy + Delta-G solvation = -22621.281842 eV Core-core repulsion = 19281.511395 eV Total energy + Delta-G solvation = -3339.770448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.45417 -38.57866 -37.30800 -34.91278 -32.79424 -32.77164 -31.79804 -30.33978 -28.06824 -26.83668 -25.42104 -24.36147 -23.07355 -21.77217 -20.79102 -19.32298 -18.53660 -17.42620 -16.69674 -16.20549 -16.06850 -15.95132 -15.39586 -15.32814 -14.91225 -14.64119 -14.29642 -13.95910 -13.61953 -13.40662 -12.85381 -12.77944 -12.45691 -12.14484 -12.13195 -11.73570 -11.58086 -11.08353 -11.04406 -10.92029 -10.72553 -10.67085 -10.48680 -10.47795 -10.42343 -9.93356 -9.71976 -9.20629 -8.77811 -8.70938 -8.38122 -7.23923 -5.97728 -3.99054 2.62197 2.69851 2.89993 3.32966 3.39507 3.43195 3.47147 4.35156 4.41266 4.48620 4.67633 4.73651 4.87779 4.93060 5.11569 5.13966 5.27621 5.30588 5.37281 5.38986 5.43875 5.52617 5.54749 5.60462 5.76290 5.85822 6.07049 6.19629 6.30543 6.43831 6.52731 6.66594 6.72873 7.18061 7.18286 7.29245 7.35763 7.48483 7.84222 8.09683 8.14942 8.21188 8.57151 9.08686 9.64527 11.12816 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025814 B = 0.003454 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.427567 B = 8104.197786 C = 8314.833432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.183 4.183 3 C 0.088 3.912 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.067 3.933 15 C -0.134 4.134 16 C 0.520 3.480 17 O -0.535 6.535 18 N -0.624 5.624 19 C 0.072 3.928 20 C 0.046 3.954 21 O -0.382 6.382 22 C 0.048 3.952 23 C 0.076 3.924 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.007 0.993 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.601 -2.907 -15.861 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.203 4.203 3 C -0.040 4.040 4 N -0.254 5.254 5 C 0.066 3.934 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.062 4.062 15 C -0.174 4.174 16 C 0.309 3.691 17 O -0.411 6.411 18 N -0.361 5.361 19 C -0.051 4.051 20 C -0.031 4.031 21 O -0.300 6.300 22 C -0.029 4.029 23 C -0.047 4.047 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.025 0.975 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.872 -2.992 -15.384 20.930 hybrid contribution -1.178 -0.052 0.519 1.288 sum 12.694 -3.044 -14.865 19.783 Atomic orbital electron populations 1.23703 0.96043 1.01132 1.00692 1.23563 0.96749 0.99895 1.00081 1.21292 0.94752 0.94461 0.93540 1.62426 1.14689 1.43840 1.04413 1.19765 0.92257 0.97210 0.84192 1.21121 1.24121 0.98331 1.10574 0.91997 1.24976 0.96942 0.96495 0.96175 1.69966 1.37754 1.30148 1.15870 0.86550 0.80017 0.83887 0.77259 1.20817 1.21351 1.19818 1.21771 0.93922 0.93984 0.96483 1.21729 0.96181 0.97595 1.01911 1.21035 0.81463 0.87240 0.79386 1.90697 1.72701 1.36762 1.40937 1.48216 1.32319 1.26076 1.29453 1.22547 0.98766 0.90774 0.93030 1.23084 0.87989 0.89431 1.02640 1.87953 1.61799 1.36268 1.43982 1.22997 0.96661 0.92029 0.91243 1.22247 0.87625 0.90963 1.03831 0.89727 0.88447 0.88618 0.89711 0.92245 0.97534 0.95880 0.93018 0.94701 0.90784 0.88203 0.89031 0.90449 0.88075 0.92299 0.87521 0.92507 0.87700 0.88068 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 14.32 29.01 0.42 -2.76 16 2 C -0.18 -3.35 7.45 -36.03 -0.27 -3.62 16 3 C 0.09 1.62 5.46 -4.97 -0.03 1.59 16 4 N -0.53 -11.12 4.66 -237.50 -1.11 -12.22 16 5 C 0.19 4.97 4.59 -4.98 -0.02 4.95 16 6 C -0.50 -14.00 8.51 -34.44 -0.29 -14.29 16 7 H 0.06 1.70 7.67 -52.49 -0.40 1.30 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 10 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 14 C 0.07 1.25 4.08 -3.82 -0.02 1.23 16 15 C -0.13 -1.86 4.00 -27.88 -0.11 -1.97 16 16 C 0.52 7.49 7.71 -10.99 -0.08 7.40 16 17 O -0.54 -9.77 15.45 5.56 0.09 -9.68 16 18 N -0.62 -6.98 3.01 -172.00 -0.52 -7.49 16 19 C 0.07 0.58 6.56 -3.32 -0.02 0.56 16 20 C 0.05 0.35 7.00 37.53 0.26 0.61 16 21 O -0.38 -3.58 10.74 -35.23 -0.38 -3.96 16 22 C 0.05 0.40 6.99 37.33 0.26 0.66 16 23 C 0.08 0.75 6.64 -3.51 -0.02 0.73 16 24 H 0.08 1.37 8.06 -52.49 -0.42 0.95 16 25 H 0.10 1.76 7.84 -52.49 -0.41 1.35 16 26 H 0.10 1.72 6.76 -52.49 -0.36 1.36 16 27 H 0.08 1.70 7.02 -51.92 -0.36 1.34 16 28 H 0.06 0.90 6.33 -51.93 -0.33 0.58 16 29 H 0.01 0.19 6.75 -51.93 -0.35 -0.16 16 30 H 0.02 0.65 7.81 -51.93 -0.41 0.25 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.03 0.69 6.25 -51.93 -0.32 0.36 16 33 H 0.07 1.50 7.82 -51.93 -0.41 1.09 16 34 H 0.10 1.26 7.67 -51.93 -0.40 0.87 16 35 H 0.09 1.12 6.35 -51.93 -0.33 0.79 16 36 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.10 0.71 6.06 -51.93 -0.31 0.40 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 1.12 7.08 -51.93 -0.37 0.75 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 343.40 15.07 5.17 5.17 Total: -1.00 -33.08 343.40 -7.91 -40.99 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.85 Total: 0.21 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.03 Total: -3.44 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.89 Total: -45.88 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.29 Total: -13.65 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.08 -7.91 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428839230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.515 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds