Wall clock time and date at job start Tue Mar 31 2020 01:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 108.97925 * 2 1 4 4 C 1.52618 * 109.04954 * 118.94318 * 2 1 3 5 5 N 1.47851 * 111.48700 * 171.09030 * 4 2 1 6 6 C 1.46895 * 110.99426 * 182.54727 * 5 4 2 7 7 C 1.50700 * 109.47337 * 293.67948 * 6 5 4 8 8 O 1.21301 * 119.99824 * 353.74749 * 7 6 5 9 9 N 1.34772 * 120.00560 * 173.74280 * 7 6 5 10 10 C 1.37097 * 120.00180 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00113 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99823 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00242 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99747 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47194 * 59.99825 * 14 12 10 16 16 H 1.48505 * 109.46990 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47154 * 299.99441 * 14 12 10 18 18 C 1.45511 * 108.16303 * 304.54365 * 5 4 2 19 19 H 1.09003 * 109.75368 * 304.78265 * 18 5 4 20 20 C 1.52455 * 117.04664 * 178.89099 * 18 5 4 21 21 C 1.54899 * 105.37616 * 213.71683 * 20 18 5 22 22 C 1.55313 * 106.35385 * 3.44235 * 21 20 18 23 23 C 1.53157 * 102.99156 * 23.93815 * 22 21 20 24 24 H 1.09001 * 110.79047 * 75.75899 * 23 22 21 25 25 O 1.41619 * 116.70597 * 203.01926 * 23 22 21 26 26 H 1.08994 * 109.47193 * 301.05830 * 1 2 3 27 27 H 1.09007 * 109.46980 * 61.05646 * 1 2 3 28 28 H 1.09002 * 109.46937 * 181.05253 * 1 2 3 29 29 H 1.08999 * 109.46513 * 178.94733 * 3 2 1 30 30 H 1.09000 * 109.46777 * 298.93791 * 3 2 1 31 31 H 1.08998 * 109.47426 * 58.94319 * 3 2 1 32 32 H 1.08996 * 109.07132 * 50.57143 * 4 2 1 33 33 H 1.09000 * 109.01750 * 291.57032 * 4 2 1 34 34 H 1.09004 * 109.47136 * 173.68238 * 6 5 4 35 35 H 1.09000 * 109.47796 * 53.68157 * 6 5 4 36 36 H 0.97002 * 119.99848 * 359.97438 * 9 7 6 37 37 H 0.97007 * 119.99662 * 0.02562 * 13 12 10 38 38 H 1.08993 * 110.26196 * 332.69363 * 20 18 5 39 39 H 1.09007 * 110.26086 * 94.74105 * 20 18 5 40 40 H 1.09004 * 110.07514 * 122.66088 * 21 20 18 41 41 H 1.09001 * 110.08276 * 244.16128 * 21 20 18 42 42 H 1.09000 * 110.70519 * 265.56358 * 22 21 20 43 43 H 1.09000 * 110.71340 * 142.31908 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0276 1.4469 0.0000 4 6 2.0281 -0.6981 1.2624 5 7 3.4896 -0.9176 1.2191 6 6 3.9484 -1.6434 2.4110 7 6 3.7576 -0.7786 3.6302 8 8 3.3932 0.3718 3.5068 9 7 3.9917 -1.2831 4.8578 10 6 3.8176 -0.4964 5.9670 11 1 3.4925 0.5276 5.8571 12 6 4.0596 -1.0165 7.2326 13 7 4.4548 -2.2627 7.3664 14 14 3.8217 0.0552 8.7440 15 1 2.4108 0.5141 8.8083 16 1 4.1425 -0.7299 9.9630 17 1 4.7221 1.2332 8.6622 18 6 3.8013 -1.6578 0.0057 19 1 3.2160 -2.5768 -0.0259 20 6 5.2697 -1.9734 -0.2559 21 6 5.4327 -1.9233 -1.7955 22 6 4.0553 -1.4893 -2.3671 23 6 3.4132 -0.7467 -1.1916 24 1 3.8532 0.2435 -1.0728 25 8 1.9997 -0.6583 -1.1902 26 1 -0.3633 0.5302 0.8803 27 1 -0.3633 0.4974 -0.8994 28 1 -0.3633 -1.0275 0.0189 29 1 3.1174 1.4562 0.0189 30 1 1.6755 1.9521 -0.8994 31 1 1.6445 1.9629 0.8803 32 1 1.5259 -1.6607 1.3588 33 1 1.7859 -0.0818 2.1282 34 1 5.0046 -1.8900 2.3021 35 1 3.3707 -2.5610 2.5225 36 1 4.2827 -2.2032 4.9566 37 1 4.5779 -2.8193 6.5815 38 1 5.9065 -1.2250 0.2157 39 1 5.5144 -2.9679 0.1175 40 1 6.1968 -1.1951 -2.0674 41 1 5.7029 -2.9085 -2.1756 42 1 3.4611 -2.3603 -2.6437 43 1 4.1844 -0.8229 -3.2199 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440966723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:08 Heat of formation + Delta-G solvation = -76.780331 kcal Electronic energy + Delta-G solvation = -23705.401109 eV Core-core repulsion = 20364.404455 eV Total energy + Delta-G solvation = -3340.996655 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.69880 -38.28360 -36.78135 -35.34451 -34.10084 -32.56200 -31.08593 -28.36242 -28.20647 -27.26105 -26.52556 -24.64403 -23.10907 -21.09179 -20.50337 -19.48492 -19.22958 -17.88304 -16.79260 -16.30269 -15.70280 -15.61855 -14.94066 -14.72910 -14.28217 -14.16389 -13.78486 -13.68380 -13.42524 -13.26023 -12.90377 -12.39545 -12.36591 -12.02407 -11.89478 -11.74676 -11.53480 -11.36944 -11.21759 -11.08988 -11.00574 -10.85914 -10.71789 -10.60380 -10.21288 -10.10062 -9.86152 -9.51717 -9.34232 -8.45934 -8.06288 -7.98562 -6.75473 -3.88528 3.30535 3.34372 3.54595 3.61347 3.84358 3.87887 4.28665 4.47994 4.60212 4.80275 4.89288 4.98185 5.07195 5.19168 5.22263 5.27435 5.32204 5.35450 5.51872 5.54845 5.61854 5.66961 5.73590 5.76591 5.81964 5.87017 5.93933 5.95825 5.98118 6.02567 6.06159 6.12681 6.18108 6.23138 6.33541 6.51992 7.10204 7.21829 7.35506 7.80668 8.07825 8.60286 8.80417 9.47666 9.88614 10.67903 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023577 B = 0.004482 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.292618 B = 6245.480077 C = 7039.088006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.116 3.884 3 C -0.165 4.165 4 C 0.029 3.971 5 N -0.488 5.488 6 C 0.041 3.959 7 C 0.446 3.554 8 O -0.570 6.570 9 N -0.577 5.577 10 C -0.381 4.381 11 H 0.099 0.901 12 C -0.009 4.009 13 N -0.901 5.901 14 Si 1.091 2.909 15 H -0.284 1.284 16 H -0.279 1.279 17 H -0.284 1.284 18 C 0.034 3.966 19 H 0.046 0.954 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.111 4.111 23 C 0.081 3.919 24 H 0.079 0.921 25 O -0.368 6.368 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.375 0.625 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.761 -0.567 -17.023 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.076 3.924 3 C -0.223 4.223 4 C -0.099 4.099 5 N -0.212 5.212 6 C -0.091 4.091 7 C 0.232 3.768 8 O -0.453 6.453 9 N -0.215 5.215 10 C -0.510 4.510 11 H 0.117 0.883 12 C -0.212 4.212 13 N -0.541 5.541 14 Si 0.917 3.083 15 H -0.210 1.210 16 H -0.204 1.204 17 H -0.210 1.210 18 C -0.076 4.076 19 H 0.064 0.936 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.149 4.149 23 C 0.023 3.977 24 H 0.097 0.903 25 O -0.287 6.287 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.208 0.792 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.786 0.645 -15.551 15.666 hybrid contribution -0.123 -1.456 -1.331 1.976 sum -1.909 -0.810 -16.881 17.008 Atomic orbital electron populations 1.21763 0.92426 1.02595 1.02699 1.21584 0.94417 0.92376 0.83973 1.22279 1.03027 0.95142 1.01833 1.22946 0.87251 1.00051 0.99630 1.62456 1.13835 1.44779 1.00112 1.21951 1.01338 0.95010 0.90774 1.19648 0.84847 0.88716 0.83606 1.90498 1.50883 1.18238 1.85690 1.41955 1.60579 1.13451 1.05503 1.20517 1.46893 0.98211 0.85419 0.88342 1.26497 0.95484 0.98382 1.00808 1.70903 1.43853 1.06723 1.32577 0.83138 0.76837 0.74187 0.74148 1.21045 1.20424 1.21004 1.22831 0.96938 0.95867 0.91983 0.93609 1.21869 0.95587 1.02012 0.96015 1.22389 0.96595 1.01610 0.94831 1.22108 0.95816 1.00276 0.96704 1.22774 0.82111 0.98680 0.94148 0.90286 1.88006 1.20075 1.79497 1.41125 0.90752 0.91662 0.92173 0.91084 0.92845 0.91217 0.95114 0.87218 0.89113 0.93744 0.79238 0.92801 0.90334 0.91548 0.91219 0.91304 0.90792 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.74 37.16 0.32 -1.38 16 2 C 0.12 1.70 1.09 -90.81 -0.10 1.60 16 3 C -0.17 -2.40 8.13 37.16 0.30 -2.10 16 4 C 0.03 0.50 3.75 -3.50 -0.01 0.48 16 5 N -0.49 -8.41 4.25 -227.41 -0.97 -9.38 16 6 C 0.04 0.74 5.31 -4.98 -0.03 0.72 16 7 C 0.45 10.54 7.40 -10.99 -0.08 10.46 16 8 O -0.57 -15.25 14.22 5.54 0.08 -15.17 16 9 N -0.58 -14.54 5.28 -10.96 -0.06 -14.60 16 10 C -0.38 -10.69 9.68 -14.93 -0.14 -10.83 16 11 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 12 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 16 13 N -0.90 -25.30 13.68 55.50 0.76 -24.54 16 14 Si 1.09 24.27 29.92 -169.99 -5.09 19.18 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.03 0.48 1.99 -67.48 -0.13 0.35 16 19 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 20 C -0.12 -1.39 5.55 -26.01 -0.14 -1.53 16 21 C -0.12 -1.11 6.87 -24.50 -0.17 -1.28 16 22 C -0.11 -1.17 6.74 -25.42 -0.17 -1.34 16 23 C 0.08 1.10 2.88 -25.39 -0.07 1.03 16 24 H 0.08 1.13 6.07 -51.93 -0.32 0.82 16 25 O -0.37 -5.46 10.31 -35.18 -0.36 -5.82 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.13 6.23 -51.93 -0.32 0.80 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 33 H 0.11 2.20 6.11 -51.93 -0.32 1.88 16 34 H 0.09 1.51 7.24 -51.93 -0.38 1.14 16 35 H 0.04 0.76 8.09 -51.93 -0.42 0.34 16 36 H 0.37 8.79 6.73 -40.82 -0.27 8.51 16 37 H 0.26 7.05 6.78 -40.82 -0.28 6.77 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -31.58 332.73 -8.11 -39.69 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -6.96 Total: 9.79 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -0.52 Total: -4.17 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.27 Total: -48.52 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.28 Total: -20.99 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.09 Total: 19.18 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.58 -8.11 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440966723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.090 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds