Wall clock time and date at job start Tue Mar 31 2020 02:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47416 * 2 1 4 4 C 1.52995 * 109.47416 * 180.02562 * 3 2 1 5 5 H 1.09008 * 110.05617 * 53.26128 * 4 3 2 6 6 C 1.54368 * 110.04874 * 291.78972 * 4 3 2 7 7 C 1.54888 * 104.19927 * 217.09124 * 6 4 3 8 8 C 1.54889 * 102.74744 * 37.96602 * 7 6 4 9 9 C 1.53876 * 110.03207 * 174.67499 * 4 3 2 10 10 H 1.09003 * 110.03355 * 238.61323 * 9 4 3 11 11 C 1.50700 * 110.03350 * 0.02562 * 9 4 3 12 12 O 1.21281 * 119.99609 * 85.00486 * 11 9 4 13 13 N 1.34773 * 120.00072 * 265.00486 * 11 9 4 14 14 C 1.46495 * 120.00234 * 179.97438 * 13 11 9 15 15 C 1.50698 * 109.47378 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99729 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00228 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99910 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00061 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99900 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00134 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00153 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47001 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46898 * 119.99754 * 22 20 18 25 25 H 1.48498 * 109.47126 * 239.99952 * 22 20 18 26 26 H 1.09006 * 109.47525 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47339 * 300.00073 * 1 2 3 28 28 H 1.09001 * 109.47682 * 60.00177 * 1 2 3 29 29 H 1.08997 * 109.47048 * 239.99475 * 2 1 3 30 30 H 1.09006 * 109.47270 * 120.00050 * 2 1 3 31 31 H 1.08999 * 109.46926 * 59.99675 * 3 2 1 32 32 H 1.09006 * 109.46942 * 300.00250 * 3 2 1 33 33 H 1.08999 * 110.46878 * 98.41726 * 6 4 3 34 34 H 1.09002 * 110.50675 * 335.77886 * 6 4 3 35 35 H 1.08996 * 110.75403 * 279.65283 * 7 6 4 36 36 H 1.09003 * 110.75720 * 156.28219 * 7 6 4 37 37 H 1.09007 * 110.48485 * 203.38285 * 8 7 6 38 38 H 1.09003 * 110.59850 * 80.79346 * 8 7 6 39 39 H 0.97002 * 119.99873 * 0.02562 * 13 11 9 40 40 H 1.08996 * 109.47196 * 300.00202 * 14 13 11 41 41 H 1.08995 * 109.46770 * 60.00170 * 14 13 11 42 42 H 0.96995 * 119.99877 * 0.02562 * 17 15 14 43 43 H 0.96994 * 120.00023 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9435 0.8301 -0.8215 6 6 4.0997 0.9040 1.3456 7 6 5.3553 1.7647 1.6315 8 6 4.9286 3.1677 1.1327 9 6 4.0970 2.8819 -0.1348 10 1 4.7256 2.9683 -1.0211 11 6 2.9437 3.8478 -0.2236 12 8 2.4216 4.2635 0.7891 13 7 2.4923 4.2496 -1.4283 14 6 1.3708 5.1881 -1.5146 15 6 1.0653 5.4740 -2.9623 16 8 1.7197 4.9453 -3.8361 17 7 0.0642 6.3163 -3.2862 18 6 -0.2141 6.5759 -4.6033 19 1 0.3686 6.1052 -5.3813 20 6 -1.2458 7.4447 -4.9372 21 7 -1.9546 8.0178 -3.9906 22 14 -1.6255 7.7979 -6.7318 23 1 -0.6903 7.0331 -7.5955 24 1 -3.0215 7.3901 -7.0320 25 1 -1.4668 9.2508 -6.9947 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 4.3708 -0.1479 1.2552 34 1 3.3563 1.0411 2.1309 35 1 6.2120 1.3978 1.0662 36 1 5.5752 1.7846 2.6989 37 1 5.8048 3.7679 0.8868 38 1 4.3197 3.6725 1.8827 39 1 2.9097 3.9168 -2.2382 40 1 0.4938 4.7511 -1.0372 41 1 1.6347 6.1170 -1.0091 42 1 -0.4594 6.7387 -2.5875 43 1 -2.6745 8.6245 -4.2237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451747137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:12 Heat of formation + Delta-G solvation = -110.788650 kcal Electronic energy + Delta-G solvation = -22577.228395 eV Core-core repulsion = 19234.757029 eV Total energy + Delta-G solvation = -3342.471366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.40562 -38.44147 -37.28583 -34.57007 -34.35023 -33.63360 -31.39461 -30.08189 -29.45072 -27.33291 -25.18595 -24.45698 -21.75460 -21.47211 -20.54785 -19.67155 -19.02242 -18.04214 -16.94997 -16.16294 -15.67363 -15.28322 -15.23114 -14.89872 -14.74831 -14.32116 -13.91674 -13.76555 -13.63580 -13.33531 -12.95440 -12.51714 -12.19799 -12.03465 -11.89786 -11.74450 -11.63778 -11.33190 -11.16694 -11.14579 -10.95299 -10.78495 -10.71216 -10.46845 -10.41675 -10.40903 -10.32904 -9.65344 -9.52107 -8.73674 -8.63339 -8.10700 -6.52193 -3.94160 2.87278 3.09733 3.21641 3.27752 3.43424 3.73702 4.11002 4.37914 4.48310 4.59778 4.88140 4.95552 5.01905 5.15393 5.16376 5.20881 5.34778 5.39189 5.42236 5.49642 5.53717 5.61948 5.76296 5.82239 5.83433 5.85373 5.92216 5.96810 6.00474 6.06119 6.07696 6.08827 6.19439 6.29062 6.31604 6.41320 6.72859 7.45546 7.86375 7.91851 8.43979 8.51528 9.04133 9.38883 9.86753 10.64792 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024066 B = 0.003519 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.210131 B = 7954.271963 C = 8510.221760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.129 4.129 4 C -0.075 4.075 5 H 0.079 0.921 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.113 4.113 9 C -0.110 4.110 10 H 0.090 0.910 11 C 0.523 3.477 12 O -0.549 6.549 13 N -0.709 5.709 14 C 0.108 3.892 15 C 0.428 3.572 16 O -0.597 6.597 17 N -0.550 5.550 18 C -0.305 4.305 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.932 3.068 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.410 0.590 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.715 -12.733 10.002 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.094 4.094 5 H 0.097 0.903 6 C -0.154 4.154 7 C -0.161 4.161 8 C -0.150 4.150 9 C -0.132 4.132 10 H 0.108 0.892 11 C 0.310 3.690 12 O -0.428 6.428 13 N -0.363 5.363 14 C -0.019 4.019 15 C 0.214 3.786 16 O -0.484 6.484 17 N -0.184 5.184 18 C -0.434 4.434 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.248 0.752 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.229 0.771 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.578 -12.619 10.091 18.783 hybrid contribution -0.493 0.472 -0.957 1.175 sum 9.086 -12.147 9.134 17.707 Atomic orbital electron populations 1.21778 0.95933 1.01259 1.02172 1.21497 0.95889 0.96710 1.01603 1.21967 0.94100 0.97203 1.03333 1.21715 0.95835 0.93369 0.98504 0.90282 1.22463 0.97318 0.98856 0.96766 1.22476 0.97622 0.95114 1.00856 1.22361 0.98921 0.97463 0.96294 1.22022 0.95539 0.94725 1.00910 0.89208 1.20364 0.84485 0.81073 0.83093 1.90654 1.59419 1.57495 1.35210 1.45837 1.34866 1.46555 1.08994 1.20929 0.90320 0.94105 0.96577 1.19770 0.84598 0.84848 0.89394 1.90496 1.52912 1.55210 1.49763 1.41806 1.28702 1.38954 1.08977 1.19779 1.15223 1.25015 0.83380 0.87639 1.25327 0.95966 0.96278 1.00161 1.69621 1.21079 1.29916 1.32872 0.85764 0.78386 0.78238 0.81739 1.19126 1.20609 1.20603 0.93021 0.92781 0.92534 0.92247 0.92169 0.90777 0.91361 0.91672 0.91179 0.91560 0.91443 0.91534 0.89587 0.75215 0.90028 0.90000 0.77066 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.24 5.79 -26.73 -0.15 -1.39 16 3 C -0.13 -1.57 3.40 -26.73 -0.09 -1.66 16 4 C -0.08 -0.80 2.93 -89.45 -0.26 -1.06 16 5 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 6 C -0.12 -1.07 5.56 -25.02 -0.14 -1.21 16 7 C -0.12 -1.07 6.91 -24.74 -0.17 -1.24 16 8 C -0.11 -1.22 6.32 -25.07 -0.16 -1.38 16 9 C -0.11 -1.30 3.29 -90.65 -0.30 -1.60 16 10 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 11 C 0.52 8.08 4.67 -10.99 -0.05 8.03 16 12 O -0.55 -10.01 14.98 5.56 0.08 -9.93 16 13 N -0.71 -11.72 5.05 -61.48 -0.31 -12.03 16 14 C 0.11 2.01 6.15 -5.20 -0.03 1.98 16 15 C 0.43 9.82 7.85 -10.99 -0.09 9.74 16 16 O -0.60 -15.25 15.24 5.54 0.08 -15.17 16 17 N -0.55 -13.65 5.29 -10.96 -0.06 -13.71 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 19 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.91 13.05 55.50 0.72 -23.19 16 22 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.56 7.53 -51.93 -0.39 0.17 16 31 H 0.07 1.04 7.06 -51.93 -0.37 0.67 16 32 H 0.07 0.96 6.85 -51.93 -0.36 0.61 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.70 7.76 -51.93 -0.40 0.30 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.10 6.90 -51.93 -0.36 0.75 16 39 H 0.41 6.72 7.43 -40.82 -0.30 6.42 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -30.10 347.04 -7.67 -37.77 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -7.08 Total: 14.47 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.32 Total: 1.06 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.36 Total: -48.93 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.17 Total: -25.10 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.10 -7.67 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451747137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.018 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds