Wall clock time and date at job start Tue Mar 31 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47547 * 2 1 4 4 C 1.53003 * 109.47020 * 240.00228 * 2 1 3 5 5 C 1.52996 * 109.47298 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47394 * 59.99980 * 5 4 2 7 7 H 1.08994 * 109.47269 * 59.99793 * 6 5 4 8 8 C 1.50700 * 109.47211 * 180.02562 * 6 5 4 9 9 O 1.21287 * 120.00116 * 119.99882 * 8 6 5 10 10 N 1.34771 * 119.99866 * 299.99660 * 8 6 5 11 11 C 1.46499 * 120.00212 * 180.02562 * 10 8 6 12 12 C 1.50702 * 109.47215 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00004 * 180.02562 * 12 11 10 15 15 C 1.37092 * 119.99804 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00499 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99671 * 179.72159 * 15 14 12 18 18 N 1.31411 * 119.99899 * 180.27617 * 17 15 14 19 19 Si 1.86800 * 120.00160 * 0.27431 * 17 15 14 20 20 H 1.48508 * 109.46685 * 89.99768 * 19 17 15 21 21 H 1.48494 * 109.47357 * 209.99847 * 19 17 15 22 22 H 1.48494 * 109.47227 * 330.00365 * 19 17 15 23 23 C 1.53008 * 109.47076 * 299.99954 * 6 5 4 24 24 C 1.52996 * 109.47207 * 120.00493 * 2 1 3 25 25 H 1.09002 * 109.47575 * 59.99335 * 24 2 1 26 26 C 1.53003 * 109.46915 * 299.99799 * 24 2 1 27 27 H 1.08999 * 109.46348 * 299.99824 * 1 2 3 28 28 H 1.08998 * 109.46943 * 59.99294 * 1 2 3 29 29 H 1.08994 * 109.47116 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47259 * 300.00148 * 4 2 1 31 31 H 1.09004 * 109.47038 * 60.00012 * 4 2 1 32 32 H 1.09008 * 109.47191 * 299.99737 * 5 4 2 33 33 H 1.09003 * 109.47341 * 180.02562 * 5 4 2 34 34 H 0.97005 * 120.00065 * 0.02562 * 10 8 6 35 35 H 1.09004 * 109.47039 * 60.00081 * 11 10 8 36 36 H 1.08994 * 109.47376 * 299.99946 * 11 10 8 37 37 H 0.97000 * 119.99715 * 359.97438 * 14 12 11 38 38 H 0.97005 * 120.00019 * 180.02562 * 18 17 15 39 39 H 1.08990 * 109.47182 * 179.97438 * 23 6 5 40 40 H 1.09003 * 109.47260 * 300.00558 * 23 6 5 41 41 H 1.09000 * 109.46939 * 299.99421 * 26 24 2 42 42 H 1.09001 * 109.47249 * 60.00084 * 26 24 2 43 43 H 1.09004 * 109.47038 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4435 0.0001 7 1 3.7158 -2.4709 -0.0001 8 6 5.5865 -1.4435 0.0006 9 8 6.1927 -0.9186 0.9106 10 7 6.2607 -2.0268 -1.0101 11 6 7.7257 -2.0273 -1.0094 12 6 8.2284 -2.7379 -2.2396 13 8 7.4405 -3.1981 -3.0387 14 7 9.5536 -2.8619 -2.4520 15 6 10.0109 -3.5079 -3.5714 16 1 9.3093 -3.9169 -4.2834 17 6 11.3771 -3.6307 -3.7933 18 7 11.8154 -4.2451 -4.8690 19 14 12.5906 -2.9224 -2.5624 20 1 12.9158 -3.9500 -1.5406 21 1 13.8321 -2.5164 -3.2687 22 1 11.9886 -1.7381 -1.8990 23 6 3.5696 -0.7222 1.2495 24 6 2.0400 -0.7213 1.2491 25 1 1.6766 -1.7490 1.2492 26 6 1.5301 -0.0001 2.4984 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6766 -1.7490 -1.2494 31 1 1.6767 -0.2073 -2.1393 32 1 3.9337 0.3058 -1.2488 33 1 3.9333 -1.2352 -2.1393 34 1 5.7759 -2.4463 -1.7381 35 1 8.0884 -2.5418 -0.1194 36 1 8.0894 -0.9999 -1.0087 37 1 10.1837 -2.4935 -1.8131 38 1 12.7692 -4.3312 -5.0237 39 1 3.9322 -1.2365 2.1393 40 1 3.9333 0.3054 1.2497 41 1 1.8935 1.0275 2.4985 42 1 0.4400 -0.0001 2.4985 43 1 1.8938 -0.5138 3.3884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451749338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:28 Heat of formation + Delta-G solvation = -108.493986 kcal Electronic energy + Delta-G solvation = -22214.018035 eV Core-core repulsion = 18871.646173 eV Total energy + Delta-G solvation = -3342.371862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32612 -38.82011 -38.01055 -34.55166 -33.83279 -33.28855 -32.18248 -31.81023 -28.37144 -27.47875 -25.88551 -24.28319 -22.19694 -21.91396 -19.96984 -19.87155 -19.56242 -18.60255 -17.04769 -15.97234 -15.59977 -15.34758 -15.02686 -14.85214 -14.74660 -14.42949 -14.18048 -14.02921 -13.66112 -13.17784 -12.84449 -12.71538 -12.50258 -12.26103 -12.18387 -12.09969 -11.98972 -11.94769 -11.61849 -11.24963 -11.14039 -11.05903 -10.70494 -10.65585 -10.45058 -10.14118 -10.07762 -9.71249 -9.57396 -8.86877 -8.78555 -8.31927 -6.42173 -3.94734 2.78158 2.98450 3.03165 3.11113 3.31159 3.54931 4.02288 4.42363 4.44520 4.47325 4.56533 4.80025 4.87029 5.02157 5.11257 5.12708 5.23285 5.24952 5.32756 5.37823 5.47176 5.56593 5.59350 5.64494 5.68938 5.74709 5.78162 5.80449 5.82581 5.86009 5.96346 6.03250 6.08134 6.14401 6.19486 6.34501 6.59108 7.42736 7.75834 7.99002 8.37711 8.45953 8.80248 9.28427 9.62027 10.69981 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040021 B = 0.002986 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.470206 B = 9373.968562 C = 9906.873409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.113 4.113 6 C -0.104 4.104 7 H 0.097 0.903 8 C 0.515 3.485 9 O -0.551 6.551 10 N -0.708 5.708 11 C 0.105 3.895 12 C 0.438 3.562 13 O -0.579 6.579 14 N -0.576 5.576 15 C -0.310 4.310 16 H 0.122 0.878 17 C 0.045 3.955 18 N -0.874 5.874 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.267 1.267 23 C -0.092 4.092 24 C -0.087 4.087 25 H 0.070 0.930 26 C -0.148 4.148 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.276 0.724 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.673 8.373 11.950 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.125 4.125 7 H 0.115 0.885 8 C 0.301 3.699 9 O -0.429 6.429 10 N -0.362 5.362 11 C -0.023 4.023 12 C 0.224 3.776 13 O -0.463 6.463 14 N -0.214 5.214 15 C -0.439 4.439 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.513 5.513 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.192 1.192 23 C -0.130 4.130 24 C -0.106 4.106 25 H 0.088 0.912 26 C -0.206 4.206 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.250 0.750 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.208 0.792 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.543 8.345 11.898 23.559 hybrid contribution 1.084 0.233 0.429 1.189 sum -17.459 8.578 12.327 23.030 Atomic orbital electron populations 1.21890 0.95395 1.01762 1.01577 1.21202 0.95309 0.99744 0.94513 0.91156 1.21589 0.94726 1.01000 0.97649 1.21553 0.96046 1.01138 0.96352 1.21320 0.91251 1.02116 0.97815 0.88540 1.20646 0.90012 0.77745 0.81491 1.90672 1.70479 1.45588 1.36143 1.45755 1.06608 1.58115 1.25719 1.20970 0.81453 1.01577 0.98271 1.19657 0.83299 0.86149 0.88508 1.90536 1.54743 1.53129 1.47930 1.42134 1.05346 1.51149 1.22782 1.19443 0.92836 1.32160 0.99438 0.86080 1.25070 0.96975 0.97064 0.96804 1.69619 1.15340 1.40872 1.25475 0.86667 0.81744 0.79653 0.81408 1.19385 1.19966 1.19245 1.21387 0.94031 1.01326 0.96276 1.21176 0.95088 0.99719 0.94570 0.91177 1.21873 1.00851 1.00567 0.97263 0.92465 0.92870 0.92751 0.91656 0.91566 0.91358 0.90937 0.75010 0.89815 0.89821 0.79246 0.91373 0.91248 0.91197 0.92703 0.92455 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.84 37.16 0.33 -0.66 16 2 C -0.09 -0.69 2.25 -90.62 -0.20 -0.89 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.11 -0.91 5.20 -26.73 -0.14 -1.05 16 5 C -0.11 -1.12 5.10 -26.73 -0.14 -1.26 16 6 C -0.10 -1.15 2.53 -91.77 -0.23 -1.38 16 7 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 8 C 0.51 7.68 7.15 -10.99 -0.08 7.61 16 9 O -0.55 -9.87 15.98 5.55 0.09 -9.78 16 10 N -0.71 -11.21 5.42 -61.47 -0.33 -11.54 16 11 C 0.11 1.83 6.15 -5.19 -0.03 1.80 16 12 C 0.44 9.62 7.85 -10.98 -0.09 9.54 16 13 O -0.58 -14.57 15.24 5.55 0.08 -14.48 16 14 N -0.58 -13.43 5.09 -10.96 -0.06 -13.48 16 15 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 16 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 17 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 18 N -0.87 -24.94 13.96 55.50 0.77 -24.17 16 19 Si 0.88 19.02 27.74 -169.99 -4.72 14.30 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.30 6.51 56.52 0.37 -4.93 16 23 C -0.09 -0.96 3.77 -26.75 -0.10 -1.06 16 24 C -0.09 -0.71 2.24 -90.64 -0.20 -0.92 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 27 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.07 0.74 7.57 -51.93 -0.39 0.35 16 34 H 0.41 6.43 6.86 -40.82 -0.28 6.15 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 38 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -31.46 342.39 -6.85 -38.31 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -7.05 Total: 12.32 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.80 Total: 3.37 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.39 Total: -49.19 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.17 Total: -24.26 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.72 Total: 14.30 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.46 -6.85 -38.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451749338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.184 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds