Wall clock time and date at job start Tue Mar 31 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.52996 * 109.46969 * 240.00061 * 2 1 3 5 5 C 1.53002 * 109.46969 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46982 * 60.00261 * 5 4 2 7 7 H 1.08998 * 109.47061 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47088 * 59.99767 * 6 5 4 9 9 O 1.21285 * 120.00087 * 239.99585 * 8 6 5 10 10 N 1.34776 * 120.00245 * 60.00710 * 8 6 5 11 11 C 1.46496 * 120.00006 * 179.97438 * 10 8 6 12 12 C 1.50706 * 109.47106 * 179.97438 * 11 10 8 13 13 O 1.21295 * 119.99584 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00020 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99737 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00254 * 0.02562 * 15 14 12 17 17 C 1.38949 * 119.99943 * 179.97438 * 15 14 12 18 18 N 1.31413 * 120.00099 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00243 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47026 * 90.00208 * 19 17 15 21 21 H 1.48496 * 109.47474 * 210.00244 * 19 17 15 22 22 H 1.48504 * 109.47117 * 330.00775 * 19 17 15 23 23 C 1.53006 * 109.47055 * 299.99691 * 6 5 4 24 24 C 1.53000 * 109.46911 * 119.99799 * 2 1 3 25 25 H 1.09004 * 109.46724 * 60.00450 * 24 2 1 26 26 C 1.52996 * 109.47328 * 300.00267 * 24 2 1 27 27 H 1.09002 * 109.47067 * 300.00027 * 1 2 3 28 28 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 29 29 H 1.08992 * 109.47461 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47054 * 300.00097 * 4 2 1 31 31 H 1.09004 * 109.47298 * 60.00221 * 4 2 1 32 32 H 1.09000 * 109.47312 * 299.99939 * 5 4 2 33 33 H 1.09002 * 109.47067 * 179.97438 * 5 4 2 34 34 H 0.96998 * 119.99803 * 359.97438 * 10 8 6 35 35 H 1.09001 * 109.47001 * 59.99676 * 11 10 8 36 36 H 1.09000 * 109.47574 * 299.99892 * 11 10 8 37 37 H 0.96994 * 119.99756 * 0.02562 * 14 12 11 38 38 H 0.96999 * 120.00288 * 179.97438 * 18 17 15 39 39 H 1.08992 * 109.47533 * 179.97438 * 23 6 5 40 40 H 1.08996 * 109.47129 * 300.00691 * 23 6 5 41 41 H 1.09000 * 109.46870 * 299.99783 * 26 24 2 42 42 H 1.09001 * 109.47372 * 59.99633 * 26 24 2 43 43 H 1.09004 * 109.47108 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0794 -1.4435 0.0003 7 1 5.1694 -1.4435 0.0008 8 6 3.5765 -2.8641 0.0000 9 8 2.8790 -3.2607 0.9094 10 7 3.9021 -3.6940 -1.0109 11 6 3.4136 -5.0751 -1.0109 12 6 3.9155 -5.7854 -2.2417 13 8 4.6129 -5.1959 -3.0400 14 7 3.5901 -7.0758 -2.4548 15 6 4.0471 -7.7220 -3.5742 16 1 4.6681 -7.1972 -4.2851 17 6 3.7121 -9.0525 -3.7937 18 7 2.9568 -9.6913 -2.9286 19 14 4.3341 -9.9329 -5.3193 20 1 5.6428 -10.5696 -5.0244 21 1 3.3563 -10.9752 -5.7227 22 1 4.4978 -8.9538 -6.4238 23 6 3.5695 -0.7222 1.2497 24 6 2.0400 -0.7212 1.2493 25 1 1.6766 -1.7489 1.2492 26 6 1.5299 0.0000 2.4985 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.9337 0.3057 -1.2487 33 1 3.9333 -1.2360 -2.1387 34 1 4.4598 -3.3767 -1.7383 35 1 2.3236 -5.0749 -1.0109 36 1 3.7769 -5.5890 -0.1209 37 1 3.0327 -7.5472 -1.8162 38 1 2.7227 -10.6200 -3.0819 39 1 3.9320 -1.2365 2.1396 40 1 3.9331 0.3053 1.2499 41 1 1.8933 1.0276 2.4985 42 1 0.4399 0.0001 2.4985 43 1 1.8929 -0.5141 3.3885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451749339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:30 Heat of formation + Delta-G solvation = -109.527322 kcal Electronic energy + Delta-G solvation = -22767.231564 eV Core-core repulsion = 19424.814893 eV Total energy + Delta-G solvation = -3342.416671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.56118 -38.52601 -37.50947 -34.49034 -33.81327 -33.13672 -31.96479 -31.37904 -28.04815 -27.35445 -25.66449 -24.48046 -22.27978 -21.83144 -20.13560 -19.70852 -19.20287 -18.06258 -16.70879 -15.89010 -15.56039 -15.37670 -14.84283 -14.62561 -14.49076 -14.28612 -14.09315 -13.92967 -13.66591 -13.35020 -12.74395 -12.26741 -12.18837 -12.09051 -11.90533 -11.82025 -11.80297 -11.64463 -11.63667 -11.41113 -11.13412 -10.89689 -10.47428 -10.46014 -10.32203 -10.01095 -9.98418 -9.64372 -9.32454 -8.71668 -8.63531 -8.10877 -6.52251 -3.94325 2.88351 3.11077 3.21238 3.25980 3.44112 3.73620 4.10886 4.57416 4.63493 4.66724 4.88312 4.91192 4.99675 5.16187 5.17717 5.27729 5.35556 5.43367 5.47361 5.56580 5.66216 5.73865 5.74485 5.82268 5.86884 5.93960 5.95419 5.97846 6.01251 6.03935 6.07579 6.16796 6.25220 6.35663 6.36644 6.60275 6.81089 7.45170 7.86260 7.91512 8.43926 8.52425 9.03853 9.38655 9.86575 10.64649 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033051 B = 0.003244 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.963214 B = 8628.015110 C = 8679.063682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 H 0.064 0.936 4 C -0.119 4.119 5 C -0.111 4.111 6 C -0.108 4.108 7 H 0.095 0.905 8 C 0.518 3.482 9 O -0.545 6.545 10 N -0.708 5.708 11 C 0.109 3.891 12 C 0.428 3.572 13 O -0.598 6.598 14 N -0.549 5.549 15 C -0.305 4.305 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.269 1.269 23 C -0.090 4.090 24 C -0.102 4.102 25 H 0.102 0.898 26 C -0.144 4.144 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.410 0.590 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 17.603 7.198 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.156 4.156 5 C -0.149 4.149 6 C -0.129 4.129 7 H 0.113 0.887 8 C 0.304 3.696 9 O -0.424 6.424 10 N -0.361 5.361 11 C -0.019 4.019 12 C 0.214 3.786 13 O -0.484 6.484 14 N -0.184 5.184 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.128 4.128 24 C -0.121 4.121 25 H 0.120 0.880 26 C -0.202 4.202 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.248 0.752 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.089 17.464 7.291 19.040 hybrid contribution 0.240 -0.784 -0.723 1.093 sum -1.849 16.680 6.567 18.022 Atomic orbital electron populations 1.21879 0.95557 1.01929 1.01224 1.21156 0.95358 0.99013 0.94804 0.91723 1.21636 0.94977 1.01305 0.97691 1.21542 0.96337 1.00707 0.96305 1.21358 1.01531 0.92121 0.97923 0.88684 1.20524 0.80251 0.87314 0.81512 1.90602 1.38285 1.77266 1.36201 1.45769 1.53324 1.11427 1.25629 1.20930 0.99796 0.82775 0.98396 1.19773 0.86612 0.83698 0.88558 1.90493 1.43056 1.66420 1.48452 1.41799 1.45030 1.09000 1.22576 1.19730 1.29683 0.93919 1.00142 0.87689 1.25324 0.96566 0.96694 0.99123 1.69614 1.35926 1.12001 1.35956 0.85816 0.78371 0.78909 0.80954 1.20265 1.20791 1.19304 1.21343 0.96042 0.99209 0.96179 1.21445 0.94830 1.02143 0.93638 0.87968 1.21841 1.00859 0.99701 0.97759 0.92551 0.93105 0.92645 0.91747 0.91796 0.90937 0.91115 0.75230 0.90035 0.89989 0.77057 0.91586 0.91426 0.91780 0.93416 0.92705 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.84 37.16 0.33 -1.12 16 2 C -0.08 -0.87 2.25 -90.62 -0.20 -1.07 16 3 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -1.32 4.98 -26.73 -0.13 -1.45 16 5 C -0.11 -1.15 5.36 -26.73 -0.14 -1.29 16 6 C -0.11 -1.24 3.01 -91.77 -0.28 -1.52 16 7 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 8 C 0.52 7.85 5.64 -10.99 -0.06 7.79 16 9 O -0.55 -9.67 13.66 5.55 0.08 -9.59 16 10 N -0.71 -11.59 5.42 -61.47 -0.33 -11.93 16 11 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 12 C 0.43 9.79 7.85 -10.98 -0.09 9.70 16 13 O -0.60 -15.21 15.24 5.54 0.08 -15.13 16 14 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 15 C -0.31 -8.29 9.68 -14.93 -0.14 -8.44 16 16 H 0.11 2.97 7.16 -52.48 -0.38 2.59 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 18 N -0.89 -23.89 13.05 55.50 0.72 -23.17 16 19 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.09 -0.97 4.37 -26.75 -0.12 -1.09 16 24 C -0.10 -1.16 1.95 -90.65 -0.18 -1.34 16 25 H 0.10 1.49 5.51 -51.93 -0.29 1.20 16 26 C -0.14 -1.41 8.84 37.16 0.33 -1.08 16 27 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.87 7.21 -51.93 -0.37 0.49 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 34 H 0.41 6.65 6.85 -40.82 -0.28 6.37 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -29.82 338.98 -7.14 -36.96 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -6.90 Total: 14.29 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.81 Total: 1.64 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.33 Total: -48.77 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.16 Total: -24.72 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.82 -7.14 -36.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451749339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.566 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds