Wall clock time and date at job start Tue Mar 31 2020 02:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46788 * 2 1 4 4 C 1.52994 * 109.47347 * 240.00136 * 2 1 3 5 5 C 1.53004 * 109.47363 * 300.00093 * 4 2 1 6 6 C 1.53000 * 109.46718 * 299.99897 * 5 4 2 7 7 H 1.08998 * 109.47559 * 299.99880 * 6 5 4 8 8 C 1.50700 * 109.47313 * 179.97438 * 6 5 4 9 9 O 1.21287 * 120.00116 * 240.00214 * 8 6 5 10 10 N 1.34771 * 119.99866 * 59.99992 * 8 6 5 11 11 C 1.46499 * 120.00212 * 180.02562 * 10 8 6 12 12 C 1.50702 * 109.47215 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00004 * 180.02562 * 12 11 10 15 15 C 1.37092 * 119.99804 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00499 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99671 * 179.72159 * 15 14 12 18 18 N 1.31411 * 119.99899 * 180.27617 * 17 15 14 19 19 Si 1.86800 * 120.00160 * 0.27431 * 17 15 14 20 20 H 1.48508 * 109.46685 * 89.99768 * 19 17 15 21 21 H 1.48494 * 109.47357 * 209.99847 * 19 17 15 22 22 H 1.48494 * 109.47227 * 330.00365 * 19 17 15 23 23 C 1.53008 * 109.47195 * 60.00085 * 6 5 4 24 24 C 1.53000 * 109.47220 * 119.99941 * 2 1 3 25 25 H 1.08996 * 109.46830 * 180.02562 * 24 2 1 26 26 C 1.53003 * 109.47030 * 300.00165 * 24 2 1 27 27 H 1.08994 * 109.47320 * 299.99812 * 1 2 3 28 28 H 1.09003 * 109.47498 * 60.00308 * 1 2 3 29 29 H 1.09001 * 109.47245 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47349 * 59.99783 * 4 2 1 31 31 H 1.08996 * 109.47756 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.47333 * 179.97438 * 5 4 2 33 33 H 1.08996 * 109.46993 * 59.99155 * 5 4 2 34 34 H 0.97005 * 120.00065 * 0.02562 * 10 8 6 35 35 H 1.09004 * 109.47039 * 60.00081 * 11 10 8 36 36 H 1.08994 * 109.47376 * 299.99946 * 11 10 8 37 37 H 0.97000 * 119.99715 * 359.97438 * 14 12 11 38 38 H 0.97005 * 120.00019 * 180.02562 * 18 17 15 39 39 H 1.08990 * 109.47182 * 59.99751 * 23 6 5 40 40 H 1.09003 * 109.47260 * 180.02562 * 23 6 5 41 41 H 1.09000 * 109.46939 * 179.97438 * 26 24 2 42 42 H 1.09001 * 109.47249 * 300.00107 * 26 24 2 43 43 H 1.09004 * 109.47038 * 60.00097 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 1 3.1300 -2.8850 0.0000 8 6 1.5373 -4.3056 0.0003 9 8 0.8401 -4.7020 0.9101 10 7 1.8625 -5.1357 -1.0105 11 6 1.3733 -6.5166 -1.0105 12 6 1.8748 -7.2272 -2.2412 13 8 2.5726 -6.6382 -3.0396 14 7 1.5479 -8.5172 -2.4548 15 6 2.0046 -9.1637 -3.5742 16 1 2.6266 -8.6395 -4.2846 17 6 1.6724 -10.4954 -3.7915 18 7 2.1146 -11.1167 -4.8616 19 14 0.5972 -11.4023 -2.5623 20 1 -0.8300 -11.2427 -2.9407 21 1 0.9515 -12.8444 -2.5641 22 1 0.8151 -10.8407 -1.2050 23 6 1.5300 -2.1637 1.2492 24 6 2.0400 -0.7212 1.2492 25 1 3.1299 -0.7208 1.2494 26 6 1.5299 0.0000 2.4985 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6767 -0.2073 -2.1393 31 1 3.1300 -0.7208 -1.2495 32 1 1.8930 -2.6774 -2.1395 33 1 0.4401 -2.1637 -1.2492 34 1 2.4204 -4.8188 -1.7380 35 1 0.2833 -6.5160 -1.0106 36 1 1.7362 -7.0307 -0.1205 37 1 0.9902 -8.9883 -1.8162 38 1 1.8823 -12.0462 -5.0135 39 1 0.4401 -2.1638 1.2492 40 1 1.8937 -2.6773 2.1393 41 1 1.8929 -0.5141 3.3885 42 1 1.8932 1.0277 2.4985 43 1 0.4399 0.0000 2.4985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451749341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:33 Heat of formation + Delta-G solvation = -104.091519 kcal Electronic energy + Delta-G solvation = -22413.930927 eV Core-core repulsion = 19071.749970 eV Total energy + Delta-G solvation = -3342.180957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46652 -38.91023 -38.04662 -34.55104 -33.81539 -33.01933 -31.96609 -31.80071 -28.18616 -27.68303 -25.93136 -24.50132 -22.90932 -21.86521 -19.99139 -19.59693 -18.67474 -18.58896 -17.03400 -16.03016 -15.69191 -15.45395 -15.28276 -15.20074 -14.82220 -14.37813 -13.97719 -13.86644 -13.36861 -13.14117 -12.90414 -12.76447 -12.52318 -12.42884 -12.18862 -12.15015 -12.04343 -11.92704 -11.43776 -11.24706 -11.24051 -10.86669 -10.65626 -10.53196 -10.37412 -10.16805 -10.07773 -9.71246 -9.56484 -8.86757 -8.78532 -8.31927 -6.42185 -3.94750 2.78311 2.98424 3.03120 3.11094 3.31278 3.54924 4.02273 4.44494 4.45306 4.48299 4.56438 4.87825 4.90968 5.02933 5.06457 5.12670 5.16214 5.27010 5.38724 5.42297 5.48289 5.52732 5.63624 5.68431 5.70893 5.77554 5.79062 5.81555 5.84465 5.87742 5.92345 6.03649 6.14629 6.14804 6.21551 6.39754 6.59370 7.42735 7.75981 7.99006 8.37791 8.45994 8.80250 9.28425 9.62036 10.69980 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038098 B = 0.003093 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.764626 B = 9050.406751 C = 9445.234671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.103 4.103 7 H 0.096 0.904 8 C 0.515 3.485 9 O -0.551 6.551 10 N -0.708 5.708 11 C 0.105 3.895 12 C 0.438 3.562 13 O -0.579 6.579 14 N -0.576 5.576 15 C -0.310 4.310 16 H 0.122 0.878 17 C 0.045 3.955 18 N -0.874 5.874 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.267 1.267 23 C -0.094 4.094 24 C -0.088 4.088 25 H 0.069 0.931 26 C -0.148 4.148 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.412 0.588 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.276 0.724 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.349 19.960 11.924 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.125 4.125 7 H 0.114 0.886 8 C 0.301 3.699 9 O -0.429 6.429 10 N -0.362 5.362 11 C -0.023 4.023 12 C 0.224 3.776 13 O -0.463 6.463 14 N -0.214 5.214 15 C -0.439 4.439 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.513 5.513 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.192 1.192 23 C -0.132 4.132 24 C -0.106 4.106 25 H 0.088 0.912 26 C -0.206 4.206 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.250 0.750 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.208 0.792 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.365 19.826 11.873 23.230 hybrid contribution -0.520 -0.935 0.449 1.160 sum -2.885 18.891 12.322 22.738 Atomic orbital electron populations 1.22011 0.95371 1.02418 1.01384 1.21136 0.96059 0.98884 0.94491 0.91372 1.21559 1.00725 0.95039 0.97687 1.21591 1.01703 0.95677 0.96297 1.21314 1.02030 0.91286 0.97832 0.88589 1.20651 0.80269 0.87500 0.81481 1.90671 1.38474 1.77601 1.36137 1.45755 1.53376 1.11310 1.25752 1.20969 0.99938 0.83093 0.98265 1.19658 0.86256 0.83215 0.88487 1.90537 1.41853 1.65968 1.47974 1.42133 1.46373 1.10225 1.22679 1.19443 1.30512 0.94662 0.99263 0.86081 1.25069 0.97637 0.96332 0.96864 1.69619 1.43796 1.12010 1.25888 0.86668 0.81270 0.80498 0.81041 1.19381 1.19970 1.19246 1.21432 1.01794 0.93757 0.96212 1.21163 1.00113 0.94734 0.94603 0.91223 1.21871 1.01551 0.99868 0.97264 0.92575 0.92981 0.91842 0.91572 0.91688 0.91039 0.91034 0.75011 0.89826 0.89826 0.79247 0.91373 0.90823 0.91367 0.92741 0.92862 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.15 37.16 0.30 -0.92 16 2 C -0.09 -0.67 2.72 -90.62 -0.25 -0.92 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.91 5.45 -26.73 -0.15 -1.06 16 5 C -0.11 -1.14 4.83 -26.73 -0.13 -1.27 16 6 C -0.10 -1.14 2.53 -91.77 -0.23 -1.37 16 7 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 8 C 0.51 7.66 7.15 -10.99 -0.08 7.58 16 9 O -0.55 -9.83 15.98 5.55 0.09 -9.74 16 10 N -0.71 -11.19 5.42 -61.47 -0.33 -11.52 16 11 C 0.11 1.83 6.15 -5.19 -0.03 1.80 16 12 C 0.44 9.62 7.85 -10.98 -0.09 9.53 16 13 O -0.58 -14.56 15.24 5.55 0.08 -14.47 16 14 N -0.58 -13.42 5.09 -10.96 -0.06 -13.47 16 15 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 16 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 17 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 18 N -0.87 -24.95 13.96 55.50 0.77 -24.17 16 19 Si 0.88 19.01 27.74 -169.99 -4.72 14.29 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.30 6.51 56.52 0.37 -4.93 16 23 C -0.09 -0.98 3.50 -26.73 -0.09 -1.07 16 24 C -0.09 -0.72 2.50 -90.62 -0.23 -0.94 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 27 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 30 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.73 7.57 -51.93 -0.39 0.34 16 33 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 34 H 0.41 6.43 6.86 -40.82 -0.28 6.15 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 38 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.07 0.84 6.39 -51.93 -0.33 0.51 16 40 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -31.43 335.36 -6.68 -38.11 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -6.69 Total: 12.92 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.89 Total: 3.00 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.39 Total: -49.17 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: 0.17 Total: -24.21 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.72 Total: 14.29 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.43 -6.68 -38.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451749341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.981 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds