Wall clock time and date at job start Tue Mar 31 2020 02:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20763 * 120.00175 * 2 1 4 4 C 1.50702 * 119.99906 * 180.02562 * 2 1 3 5 5 H 1.09001 * 109.47555 * 319.99558 * 4 2 1 6 6 N 1.46503 * 109.46924 * 199.99661 * 4 2 1 7 7 C 1.34781 * 119.99720 * 85.00137 * 6 4 2 8 8 O 1.21280 * 119.99836 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99619 * 179.72400 * 7 6 4 10 10 N 1.46498 * 109.46883 * 179.97438 * 9 7 6 11 11 C 1.36938 * 120.00112 * 270.00176 * 10 9 7 12 12 H 1.08003 * 120.00206 * 192.50247 * 11 10 9 13 13 C 1.38809 * 120.00090 * 12.50506 * 11 10 9 14 14 N 1.31623 * 120.00249 * 25.41304 * 13 11 10 15 15 Si 1.86802 * 120.00043 * 205.42237 * 13 11 10 16 16 H 1.48500 * 109.47622 * 89.99511 * 15 13 11 17 17 H 1.48504 * 109.46936 * 209.99435 * 15 13 11 18 18 H 1.48496 * 109.46837 * 329.99203 * 15 13 11 19 19 C 1.46501 * 120.00296 * 89.99931 * 10 9 7 20 20 C 1.52995 * 117.50448 * 194.12248 * 19 10 9 21 21 C 1.52996 * 117.50332 * 125.46014 * 19 10 9 22 22 C 1.52997 * 109.47290 * 79.99786 * 4 2 1 23 23 C 1.52996 * 109.47357 * 299.99939 * 22 4 2 24 24 C 1.53007 * 109.47255 * 59.99787 * 22 4 2 25 25 H 1.09003 * 109.47102 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47030 * 299.99516 * 1 2 3 27 27 H 1.08996 * 109.47077 * 59.99574 * 1 2 3 28 28 H 0.96998 * 119.99888 * 264.99812 * 6 4 2 29 29 H 1.08994 * 109.47155 * 299.99494 * 9 7 6 30 30 H 1.09001 * 109.46937 * 60.00043 * 9 7 6 31 31 H 0.97000 * 120.00486 * 175.22117 * 14 13 11 32 32 H 1.09006 * 115.55056 * 339.79388 * 19 10 9 33 33 H 1.09005 * 117.49690 * 359.97438 * 20 19 10 34 34 H 1.09001 * 117.49948 * 145.01805 * 20 19 10 35 35 H 1.08999 * 117.50295 * 214.98849 * 21 19 10 36 36 H 1.09000 * 117.49680 * 359.97438 * 21 19 10 37 37 H 1.09004 * 109.47281 * 179.97438 * 22 4 2 38 38 H 1.09004 * 109.47039 * 59.99713 * 23 22 4 39 39 H 1.08997 * 109.47186 * 179.97438 * 23 22 4 40 40 H 1.08997 * 109.47106 * 300.00308 * 23 22 4 41 41 H 1.09000 * 109.47083 * 179.97438 * 24 22 4 42 42 H 1.08990 * 109.47047 * 300.00314 * 24 22 4 43 43 H 1.09004 * 109.46691 * 60.00012 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7604 -2.0137 0.6597 6 7 3.6287 -1.0792 0.4719 7 6 3.8933 -1.0757 1.7934 8 8 2.9986 -1.2590 2.5915 9 6 5.3019 -0.8495 2.2792 10 7 5.3260 -0.8911 3.7434 11 6 5.1371 0.2578 4.4642 12 1 5.3522 0.2729 5.5225 13 6 4.6690 1.4030 3.8348 14 7 3.9504 1.3034 2.7365 15 14 5.0590 3.0856 4.5462 16 1 6.3308 3.5861 3.9653 17 1 3.9599 4.0288 4.2179 18 1 5.1963 2.9796 6.0210 19 6 5.5522 -2.1618 4.4366 20 6 5.2427 -2.2146 5.9339 21 6 6.6954 -2.2191 5.4517 22 6 2.2985 -1.8715 -1.4214 23 6 0.8696 -2.1074 -1.9148 24 6 3.0004 -0.8769 -2.3483 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 4.3441 -0.9323 -0.1665 29 1 5.9525 -1.6288 1.8825 30 1 5.6518 0.1247 1.9379 31 1 3.5651 2.0980 2.3352 32 1 5.3547 -3.0590 3.8499 33 1 4.8711 -1.3038 6.4035 34 1 4.8419 -3.1467 6.3324 35 1 7.2499 -3.1539 5.5332 36 1 7.2795 -1.3114 5.6036 37 1 2.8439 -2.8152 -1.4219 38 1 0.3246 -1.1634 -1.9144 39 1 0.8968 -2.5104 -2.9272 40 1 0.3695 -2.8158 -1.2545 41 1 3.0279 -1.2806 -3.3604 42 1 2.4555 0.0670 -2.3478 43 1 4.0185 -0.7088 -1.9967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533407134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:27 Heat of formation + Delta-G solvation = -14.968620 kcal Electronic energy + Delta-G solvation = -23872.208584 eV Core-core repulsion = 20533.892286 eV Total energy + Delta-G solvation = -3338.316298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.75301 -37.84910 -36.63437 -35.73579 -33.26450 -32.34602 -30.39618 -30.08167 -27.41244 -26.96915 -25.42081 -23.51522 -21.36977 -21.15173 -19.95867 -19.38482 -18.59182 -16.78003 -16.04673 -15.69661 -15.42220 -15.29595 -14.89124 -14.23967 -13.95787 -13.82427 -13.51145 -13.22642 -12.98014 -12.83584 -12.57420 -12.31553 -12.11533 -11.88670 -11.66283 -11.55156 -11.17639 -11.01072 -10.90239 -10.75443 -10.63815 -10.60381 -10.40428 -10.24468 -9.90582 -9.70370 -9.32368 -9.27399 -8.48525 -8.22787 -7.88926 -6.70707 -5.72182 -3.00630 2.61172 3.43273 3.50773 3.53078 3.99908 4.29628 4.55867 4.65372 4.85868 4.95285 4.98451 5.08116 5.27015 5.40150 5.50047 5.54792 5.59881 5.61869 5.72285 5.79674 5.86036 5.90757 6.00530 6.01819 6.09320 6.12912 6.22142 6.23120 6.35536 6.43502 6.49710 6.58640 6.75931 6.96565 7.12487 7.14871 7.43643 7.89394 8.17656 8.34745 8.68344 9.22013 9.76851 9.93463 10.31990 11.36092 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017596 B = 0.006209 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.875993 B = 4508.712273 C = 5436.516963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.343 3.657 3 O -0.425 6.425 4 C 0.112 3.888 5 H 0.100 0.900 6 N -0.735 5.735 7 C 0.533 3.467 8 O -0.526 6.526 9 C 0.168 3.832 10 N -0.536 5.536 11 C -0.263 4.263 12 H 0.079 0.921 13 C 0.006 3.994 14 N -0.879 5.879 15 Si 0.902 3.098 16 H -0.289 1.289 17 H -0.295 1.295 18 H -0.282 1.282 19 C 0.133 3.867 20 C -0.201 4.201 21 C -0.224 4.224 22 C -0.094 4.094 23 C -0.155 4.155 24 C -0.151 4.151 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.388 0.612 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.260 0.740 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -7.983 -10.622 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.213 3.787 3 O -0.295 6.295 4 C 0.004 3.996 5 H 0.118 0.882 6 N -0.391 5.391 7 C 0.320 3.680 8 O -0.399 6.399 9 C 0.037 3.963 10 N -0.251 5.251 11 C -0.392 4.392 12 H 0.097 0.903 13 C -0.194 4.194 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.216 1.216 17 H -0.221 1.221 18 H -0.208 1.208 19 C 0.023 3.977 20 C -0.240 4.240 21 C -0.265 4.265 22 C -0.113 4.113 23 C -0.213 4.213 24 C -0.208 4.208 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.221 0.779 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.294 -7.355 -10.119 12.936 hybrid contribution 0.061 1.104 0.192 1.123 sum -3.233 -6.251 -9.928 12.169 Atomic orbital electron populations 1.22395 0.96042 1.03813 1.03804 1.24916 0.91153 0.91297 0.71288 1.90424 1.71479 1.34495 1.33134 1.21179 0.86799 0.96040 0.95551 0.88246 1.46143 1.07041 1.77404 1.08473 1.21958 0.93665 0.72495 0.79927 1.90504 1.47621 1.47908 1.53905 1.20560 0.90756 1.00799 0.84136 1.43470 1.79142 1.02563 0.99914 1.19087 1.40275 0.86022 0.93784 0.90311 1.24804 0.98313 0.98217 0.98072 1.69723 1.32139 1.28272 1.22062 0.86288 0.77565 0.84542 0.78369 1.21585 1.22140 1.20750 1.20870 0.98998 0.89565 0.88268 1.23112 0.98346 1.01785 1.00765 1.23414 0.91822 1.01177 1.10095 1.21245 0.97514 0.99540 0.92977 1.22050 0.95783 1.02335 1.01128 1.21887 1.01063 0.99120 0.98747 0.90429 0.89589 0.89972 0.77872 0.94187 0.88519 0.92925 0.89404 0.88559 0.90773 0.90794 0.89377 0.89861 0.91880 0.92310 0.92062 0.92501 0.92484 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.76 8.53 36.00 0.31 -2.46 16 2 C 0.34 6.06 4.99 -29.04 -0.14 5.91 16 3 O -0.43 -9.30 16.99 6.00 0.10 -9.20 16 4 C 0.11 1.80 2.11 -69.08 -0.15 1.66 16 5 H 0.10 1.70 7.58 -51.93 -0.39 1.31 16 6 N -0.74 -13.68 4.57 -54.93 -0.25 -13.93 16 7 C 0.53 12.42 5.74 -10.98 -0.06 12.35 16 8 O -0.53 -14.50 15.54 5.56 0.09 -14.41 16 9 C 0.17 3.89 5.48 -5.19 -0.03 3.86 16 10 N -0.54 -13.48 2.38 -167.03 -0.40 -13.88 16 11 C -0.26 -7.27 8.90 -15.06 -0.13 -7.40 16 12 H 0.08 2.18 6.27 -52.48 -0.33 1.86 16 13 C 0.01 0.16 4.83 -17.43 -0.08 0.08 16 14 N -0.88 -25.39 8.87 55.49 0.49 -24.90 16 15 Si 0.90 22.57 29.63 -169.99 -5.04 17.53 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 C 0.13 2.92 6.60 -67.93 -0.45 2.47 16 20 C -0.20 -4.15 9.77 -26.70 -0.26 -4.41 16 21 C -0.22 -4.32 10.14 -26.70 -0.27 -4.59 16 22 C -0.09 -1.07 2.91 -90.62 -0.26 -1.34 16 23 C -0.16 -1.43 7.97 37.16 0.30 -1.14 16 24 C -0.15 -1.71 8.77 37.16 0.33 -1.39 16 25 H 0.08 0.86 6.81 -51.93 -0.35 0.50 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.08 0.94 7.81 -51.93 -0.41 0.53 16 28 H 0.39 6.34 6.87 -40.82 -0.28 6.06 16 29 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.10 2.42 6.61 -51.93 -0.34 2.08 16 31 H 0.26 7.72 8.32 -40.82 -0.34 7.38 16 32 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 33 H 0.10 2.20 6.44 -51.93 -0.33 1.86 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.59 5.36 -51.93 -0.28 0.31 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.52 8.06 -51.93 -0.42 0.11 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.74 7.00 -51.93 -0.36 0.37 16 43 H 0.06 0.72 6.51 -51.93 -0.34 0.38 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -33.96 342.86 -7.53 -41.49 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.77 Total: 8.52 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.91 Total: 3.62 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.16 Total: -52.71 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.19 Total: -23.61 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.04 Total: 17.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.96 -7.53 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533407134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.519 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds