Wall clock time and date at job start Tue Mar 31 2020 02:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20763 * 120.00175 * 2 1 4 4 C 1.50702 * 119.99906 * 180.02562 * 2 1 3 5 5 H 1.09001 * 109.47555 * 319.99558 * 4 2 1 6 6 N 1.46503 * 109.46924 * 199.99661 * 4 2 1 7 7 C 1.34781 * 119.99720 * 85.00137 * 6 4 2 8 8 O 1.21280 * 119.99836 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99619 * 179.72400 * 7 6 4 10 10 N 1.46498 * 109.46883 * 179.97438 * 9 7 6 11 11 C 1.36938 * 120.00112 * 270.00176 * 10 9 7 12 12 H 1.08003 * 120.00206 * 192.50247 * 11 10 9 13 13 C 1.38809 * 120.00090 * 12.50506 * 11 10 9 14 14 N 1.31623 * 120.00249 * 25.41304 * 13 11 10 15 15 Si 1.86802 * 120.00043 * 205.42237 * 13 11 10 16 16 H 1.48500 * 109.47622 * 89.99511 * 15 13 11 17 17 H 1.48504 * 109.46936 * 209.99435 * 15 13 11 18 18 H 1.48496 * 109.46837 * 329.99203 * 15 13 11 19 19 C 1.46501 * 120.00296 * 89.99931 * 10 9 7 20 20 C 1.52995 * 117.50448 * 194.12248 * 19 10 9 21 21 C 1.52996 * 117.50332 * 125.46014 * 19 10 9 22 22 C 1.52997 * 109.47290 * 79.99786 * 4 2 1 23 23 C 1.52996 * 109.47357 * 299.99939 * 22 4 2 24 24 C 1.53007 * 109.47255 * 59.99787 * 22 4 2 25 25 H 1.09003 * 109.47102 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47030 * 299.99516 * 1 2 3 27 27 H 1.08996 * 109.47077 * 59.99574 * 1 2 3 28 28 H 0.96998 * 119.99888 * 264.99812 * 6 4 2 29 29 H 1.08994 * 109.47155 * 299.99494 * 9 7 6 30 30 H 1.09001 * 109.46937 * 60.00043 * 9 7 6 31 31 H 0.97000 * 120.00486 * 175.22117 * 14 13 11 32 32 H 1.09006 * 115.55056 * 339.79388 * 19 10 9 33 33 H 1.09005 * 117.49690 * 359.97438 * 20 19 10 34 34 H 1.09001 * 117.49948 * 145.01805 * 20 19 10 35 35 H 1.08999 * 117.50295 * 214.98849 * 21 19 10 36 36 H 1.09000 * 117.49680 * 359.97438 * 21 19 10 37 37 H 1.09004 * 109.47281 * 179.97438 * 22 4 2 38 38 H 1.09004 * 109.47039 * 59.99713 * 23 22 4 39 39 H 1.08997 * 109.47186 * 179.97438 * 23 22 4 40 40 H 1.08997 * 109.47106 * 300.00308 * 23 22 4 41 41 H 1.09000 * 109.47083 * 179.97438 * 24 22 4 42 42 H 1.08990 * 109.47047 * 300.00314 * 24 22 4 43 43 H 1.09004 * 109.46691 * 60.00012 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7604 -2.0137 0.6597 6 7 3.6287 -1.0792 0.4719 7 6 3.8933 -1.0757 1.7934 8 8 2.9986 -1.2590 2.5915 9 6 5.3019 -0.8495 2.2792 10 7 5.3260 -0.8911 3.7434 11 6 5.1371 0.2578 4.4642 12 1 5.3522 0.2729 5.5225 13 6 4.6690 1.4030 3.8348 14 7 3.9504 1.3034 2.7365 15 14 5.0590 3.0856 4.5462 16 1 6.3308 3.5861 3.9653 17 1 3.9599 4.0288 4.2179 18 1 5.1963 2.9796 6.0210 19 6 5.5522 -2.1618 4.4366 20 6 5.2427 -2.2146 5.9339 21 6 6.6954 -2.2191 5.4517 22 6 2.2985 -1.8715 -1.4214 23 6 0.8696 -2.1074 -1.9148 24 6 3.0004 -0.8769 -2.3483 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 4.3441 -0.9323 -0.1665 29 1 5.9525 -1.6288 1.8825 30 1 5.6518 0.1247 1.9379 31 1 3.5651 2.0980 2.3352 32 1 5.3547 -3.0590 3.8499 33 1 4.8711 -1.3038 6.4035 34 1 4.8419 -3.1467 6.3324 35 1 7.2499 -3.1539 5.5332 36 1 7.2795 -1.3114 5.6036 37 1 2.8439 -2.8152 -1.4219 38 1 0.3246 -1.1634 -1.9144 39 1 0.8968 -2.5104 -2.9272 40 1 0.3695 -2.8158 -1.2545 41 1 3.0279 -1.2806 -3.3604 42 1 2.4555 0.0670 -2.3478 43 1 4.0185 -0.7088 -1.9967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533407134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:27 Heat of formation + Delta-G solvation = -37.193549 kcal Electronic energy + Delta-G solvation = -23873.172329 eV Core-core repulsion = 20533.892286 eV Total energy + Delta-G solvation = -3339.280043 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18397 -39.59298 -38.32900 -37.02811 -35.16866 -33.86400 -32.37056 -31.27150 -29.04827 -27.84276 -27.04372 -25.35135 -22.97483 -22.26848 -21.72580 -21.09082 -19.93957 -18.48480 -17.72760 -17.50235 -17.03118 -16.65109 -16.21405 -16.05616 -15.75903 -15.24257 -14.81417 -14.65505 -14.54026 -14.22403 -13.86040 -13.63570 -13.51044 -13.36982 -13.12077 -12.89022 -12.74773 -12.60029 -12.36838 -12.24030 -12.10562 -11.96819 -11.85918 -11.81859 -11.69987 -11.62047 -10.98631 -10.77606 -10.40741 -10.21408 -9.43943 -8.64471 -7.83480 -5.11374 1.23415 1.41345 1.43583 1.51645 2.39113 2.46542 2.79409 3.15674 3.34462 3.48030 3.52714 3.82039 4.00008 4.14300 4.27917 4.30743 4.43929 4.48226 4.51722 4.56683 4.60266 4.73315 4.74588 4.84447 4.93332 4.95968 4.99118 5.02938 5.08179 5.10320 5.19762 5.22123 5.33339 5.42739 5.48397 5.52387 5.72124 5.93813 6.27536 6.82510 7.00579 7.18349 7.84809 8.09811 8.28374 9.19458 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017596 B = 0.006209 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.875993 B = 4508.712273 C = 5436.516963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.336 3.664 3 O -0.477 6.477 4 C 0.107 3.893 5 H 0.091 0.909 6 N -0.724 5.724 7 C 0.535 3.465 8 O -0.576 6.576 9 C 0.166 3.834 10 N -0.554 5.554 11 C -0.260 4.260 12 H 0.071 0.929 13 C -0.046 4.046 14 N -0.892 5.892 15 Si 0.956 3.044 16 H -0.283 1.283 17 H -0.308 1.308 18 H -0.276 1.276 19 C 0.105 3.895 20 C -0.204 4.204 21 C -0.193 4.193 22 C -0.083 4.083 23 C -0.154 4.154 24 C -0.149 4.149 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.399 0.601 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.243 0.757 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.037 0.963 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 -10.022 -11.680 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.210 3.790 3 O -0.351 6.351 4 C 0.000 4.000 5 H 0.109 0.891 6 N -0.378 5.378 7 C 0.323 3.677 8 O -0.453 6.453 9 C 0.036 3.964 10 N -0.270 5.270 11 C -0.390 4.390 12 H 0.089 0.911 13 C -0.243 4.243 14 N -0.537 5.537 15 Si 0.786 3.214 16 H -0.210 1.210 17 H -0.236 1.236 18 H -0.201 1.201 19 C -0.003 4.003 20 C -0.243 4.243 21 C -0.233 4.233 22 C -0.102 4.102 23 C -0.212 4.212 24 C -0.207 4.207 25 H 0.125 0.875 26 H 0.089 0.911 27 H 0.126 0.874 28 H 0.234 0.766 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.056 0.944 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.068 -9.436 -11.204 14.966 hybrid contribution 0.016 1.643 0.519 1.723 sum -3.052 -7.793 -10.685 13.572 Atomic orbital electron populations 1.22413 0.92982 1.05914 1.04231 1.25618 0.93164 0.90995 0.69178 1.90416 1.72816 1.36092 1.35790 1.21468 0.84861 0.95406 0.98307 0.89077 1.45900 1.08810 1.75803 1.07334 1.21853 0.93162 0.71759 0.80957 1.90468 1.48799 1.50509 1.55526 1.20569 0.91532 1.00684 0.83655 1.43599 1.79611 1.03156 1.00671 1.19207 1.38878 0.87301 0.93654 0.91076 1.25408 0.99038 1.00753 0.99059 1.69923 1.33276 1.27332 1.23121 0.85432 0.76805 0.81157 0.77982 1.21028 1.23618 1.20132 1.21206 1.01268 0.88891 0.88960 1.23108 0.99834 1.01748 0.99624 1.23368 0.90901 1.02338 1.06707 1.21259 0.99660 0.99663 0.89627 1.22065 0.93835 1.02692 1.02576 1.21883 1.00057 0.98391 1.00322 0.87538 0.91102 0.87419 0.76610 0.90567 0.90968 0.94755 0.87742 0.91494 0.88097 0.86949 0.90834 0.88275 0.92058 0.89987 0.91152 0.89638 0.94384 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.22 8.53 71.24 0.61 -4.61 16 2 C 0.34 11.95 4.99 29.10 0.15 12.10 16 3 O -0.48 -21.61 16.99 -1.46 -0.02 -21.63 16 4 C 0.11 3.37 2.11 44.24 0.09 3.47 16 5 H 0.09 3.08 7.58 -2.39 -0.02 3.06 16 6 N -0.72 -27.04 4.57 -446.08 -2.04 -29.08 16 7 C 0.54 25.30 5.74 87.66 0.50 25.80 16 8 O -0.58 -32.42 15.54 -3.03 -0.05 -32.46 16 9 C 0.17 7.73 5.48 85.63 0.47 8.20 16 10 N -0.55 -28.01 2.38 -682.35 -1.62 -29.63 16 11 C -0.26 -14.66 8.90 84.03 0.75 -13.92 16 12 H 0.07 4.03 6.27 -2.91 -0.02 4.01 16 13 C -0.05 -2.62 4.83 84.86 0.41 -2.22 16 14 N -0.89 -53.40 8.87 21.65 0.19 -53.21 16 15 Si 0.96 47.81 29.63 68.60 2.03 49.85 16 16 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 17 H -0.31 -16.01 7.11 99.48 0.71 -15.31 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 19 C 0.11 4.48 6.60 44.99 0.30 4.78 16 20 C -0.20 -8.17 9.77 30.61 0.30 -7.88 16 21 C -0.19 -6.96 10.14 30.62 0.31 -6.65 16 22 C -0.08 -1.72 2.91 -10.79 -0.03 -1.75 16 23 C -0.15 -2.34 7.97 71.98 0.57 -1.76 16 24 C -0.15 -3.13 8.77 71.98 0.63 -2.50 16 25 H 0.11 2.13 6.81 -2.39 -0.02 2.12 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.11 2.28 7.81 -2.39 -0.02 2.26 16 28 H 0.40 13.02 6.87 -92.71 -0.64 12.38 16 29 H 0.08 2.91 8.07 -2.39 -0.02 2.89 16 30 H 0.07 3.71 6.61 -2.39 -0.02 3.70 16 31 H 0.24 15.08 8.32 -92.71 -0.77 14.31 16 32 H 0.10 4.04 8.14 -2.38 -0.02 4.02 16 33 H 0.07 3.08 6.44 -2.38 -0.02 3.06 16 34 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 0.96 5.36 -2.39 -0.01 0.95 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.96 8.06 -2.39 -0.02 0.94 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.04 0.95 7.00 -2.39 -0.02 0.93 16 43 H 0.05 1.14 6.51 -2.38 -0.02 1.12 16 Total: -1.00 -76.77 342.86 3.92 -72.85 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.37 Total: 30.26 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 5.06 Total: 13.06 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -3.47 Total: -111.92 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -0.07 Total: -54.10 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.85 kcal Total: -76.77 3.92 -72.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533407134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.659 kcal (2) G-P(sol) polarization free energy of solvation -76.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds