Wall clock time and date at job start Tue Mar 31 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20752 * 119.99707 * 2 1 4 4 C 1.50699 * 119.99984 * 180.02562 * 2 1 3 5 5 H 1.09001 * 109.47177 * 315.46276 * 4 2 1 6 6 N 1.46500 * 109.47274 * 75.46432 * 4 2 1 7 7 C 1.34770 * 120.00169 * 204.99731 * 6 4 2 8 8 O 1.21287 * 119.99879 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00135 * 179.97438 * 7 6 4 10 10 N 1.46507 * 109.47138 * 180.02562 * 9 7 6 11 11 C 1.36939 * 119.99989 * 269.99970 * 10 9 7 12 12 H 1.07996 * 119.99599 * 143.26188 * 11 10 9 13 13 C 1.38817 * 119.99753 * 323.26640 * 11 10 9 14 14 N 1.31620 * 120.00038 * 338.69220 * 13 11 10 15 15 Si 1.86805 * 119.99760 * 158.69526 * 13 11 10 16 16 H 1.48501 * 109.46983 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46719 * 119.99651 * 15 13 11 18 18 H 1.48495 * 109.47010 * 239.99899 * 15 13 11 19 19 C 1.46500 * 119.99847 * 90.00247 * 10 9 7 20 20 C 1.53008 * 117.49444 * 192.48614 * 19 10 9 21 21 C 1.52997 * 117.49927 * 123.86305 * 19 10 9 22 22 C 1.53002 * 109.47086 * 195.46343 * 4 2 1 23 23 C 1.53002 * 109.47006 * 64.58455 * 22 4 2 24 24 C 1.52997 * 109.47100 * 184.58701 * 22 4 2 25 25 H 1.08992 * 109.47320 * 354.98467 * 1 2 3 26 26 H 1.09004 * 109.46920 * 234.98265 * 1 2 3 27 27 H 1.09000 * 109.47182 * 114.98985 * 1 2 3 28 28 H 0.97000 * 119.99773 * 24.99824 * 6 4 2 29 29 H 1.09005 * 109.47306 * 299.99717 * 9 7 6 30 30 H 1.09002 * 109.47061 * 60.00229 * 9 7 6 31 31 H 0.96996 * 119.99920 * 185.03008 * 14 13 11 32 32 H 1.08999 * 115.54995 * 338.18414 * 19 10 9 33 33 H 1.08996 * 117.50053 * 359.97438 * 20 19 10 34 34 H 1.08997 * 117.49658 * 145.02336 * 20 19 10 35 35 H 1.09004 * 117.49831 * 214.97180 * 21 19 10 36 36 H 1.08999 * 117.49716 * 359.97409 * 21 19 10 37 37 H 1.09004 * 109.46667 * 304.58998 * 22 4 2 38 38 H 1.08998 * 109.47025 * 54.47234 * 23 22 4 39 39 H 1.09004 * 109.46594 * 174.46929 * 23 22 4 40 40 H 1.08998 * 109.47052 * 294.47163 * 23 22 4 41 41 H 1.08998 * 109.47307 * 60.00729 * 24 22 4 42 42 H 1.09005 * 109.46969 * 180.02562 * 24 22 4 43 43 H 1.08991 * 109.47386 * 299.99996 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8078 -1.9863 0.7199 6 7 2.2045 -1.9008 -1.3378 7 6 2.3405 -3.2331 -1.4883 8 8 2.5089 -3.9391 -0.5166 9 6 2.2823 -3.8459 -2.8639 10 7 2.4547 -5.2971 -2.7597 11 6 3.7089 -5.8436 -2.8193 12 1 3.9550 -6.6983 -2.2067 13 6 4.6637 -5.2990 -3.6671 14 7 4.2903 -4.5641 -4.6931 15 14 6.4786 -5.6093 -3.3516 16 1 6.6328 -6.4596 -2.1439 17 1 7.0735 -6.3007 -4.5236 18 1 7.1721 -4.3141 -3.1363 19 6 1.2853 -6.1634 -2.5918 20 6 1.5363 -7.6205 -2.1983 21 6 1.0796 -7.2793 -3.6181 22 6 3.7196 -1.0518 0.3841 23 6 3.7854 -0.5367 1.8233 24 6 4.5103 -2.3568 0.2728 25 1 -0.3633 1.0236 0.0898 26 1 -0.3633 -0.5897 0.8417 27 1 -0.3633 -0.4341 -0.9314 28 1 2.0695 -1.3362 -2.1150 29 1 1.3162 -3.6269 -3.3186 30 1 3.0777 -3.4286 -3.4815 31 1 4.9514 -4.2443 -5.3268 32 1 0.3954 -5.6793 -2.1895 33 1 2.5715 -7.9346 -2.0647 34 1 0.8115 -8.0952 -1.5369 35 1 0.0543 -7.5296 -3.8908 36 1 1.8141 -7.3685 -4.4185 37 1 4.1486 -0.3084 -0.2878 38 1 3.2692 -1.2343 2.4829 39 1 4.8276 -0.4496 2.1307 40 1 3.3065 0.4407 1.8817 41 1 4.4635 -2.7237 -0.7525 42 1 5.5497 -2.1764 0.5473 43 1 4.0812 -3.1001 0.9446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533407140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:29 Heat of formation + Delta-G solvation = -26.679770 kcal Electronic energy + Delta-G solvation = -23587.401240 eV Core-core repulsion = 20248.577109 eV Total energy + Delta-G solvation = -3338.824131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26345 -38.63442 -36.83745 -35.39367 -33.35821 -32.97629 -30.79127 -30.40987 -27.48696 -26.85289 -25.64055 -23.69786 -21.34677 -20.75373 -20.18987 -19.74344 -19.42546 -16.93894 -16.37973 -15.96568 -15.61708 -15.29465 -15.28193 -14.61288 -14.58761 -14.23963 -13.78725 -13.24512 -13.06835 -12.65425 -12.55271 -12.37384 -12.28856 -12.07106 -11.91083 -11.69225 -11.34140 -11.17377 -10.93286 -10.81980 -10.69737 -10.55366 -10.43435 -10.30923 -9.96144 -9.73163 -9.66208 -9.31849 -8.90339 -8.56469 -8.50817 -6.54483 -5.93330 -3.44267 1.70835 3.30389 3.40479 3.45597 3.55261 3.72256 3.99124 4.40732 4.84034 4.96509 4.99133 5.16399 5.20346 5.25858 5.28260 5.33214 5.46972 5.57047 5.76639 5.82060 5.92315 5.99105 6.03164 6.15071 6.17506 6.18400 6.24750 6.35389 6.45589 6.53434 6.59231 6.60781 6.85480 6.94195 7.02501 7.18618 7.24861 7.35885 7.80257 8.03968 8.42517 8.96226 9.15992 9.67477 10.22790 11.09419 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.005957 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.624512 B = 4699.165455 C = 5587.496915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.353 3.647 3 O -0.446 6.446 4 C 0.104 3.896 5 H 0.106 0.894 6 N -0.734 5.734 7 C 0.486 3.514 8 O -0.521 6.521 9 C 0.130 3.870 10 N -0.526 5.526 11 C -0.245 4.245 12 H 0.066 0.934 13 C 0.011 3.989 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.286 1.286 19 C 0.130 3.870 20 C -0.199 4.199 21 C -0.217 4.217 22 C -0.098 4.098 23 C -0.147 4.147 24 C -0.138 4.138 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.395 0.605 29 H 0.059 0.941 30 H 0.128 0.872 31 H 0.258 0.742 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 7.429 6.729 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.226 3.774 3 O -0.317 6.317 4 C -0.002 4.002 5 H 0.124 0.876 6 N -0.392 5.392 7 C 0.273 3.727 8 O -0.395 6.395 9 C -0.001 4.001 10 N -0.239 5.239 11 C -0.374 4.374 12 H 0.084 0.916 13 C -0.188 4.188 14 N -0.536 5.536 15 Si 0.728 3.272 16 H -0.199 1.199 17 H -0.215 1.215 18 H -0.213 1.213 19 C 0.020 3.980 20 C -0.238 4.238 21 C -0.258 4.258 22 C -0.118 4.118 23 C -0.205 4.205 24 C -0.195 4.195 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.228 0.772 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.733 7.568 7.350 12.515 hybrid contribution 0.895 0.053 -0.217 0.923 sum -5.837 7.621 7.134 11.960 Atomic orbital electron populations 1.22323 0.94153 1.04645 1.04981 1.24892 0.92172 0.90084 0.70216 1.90387 1.72144 1.34880 1.34310 1.21462 0.96298 0.93470 0.88982 0.87636 1.46333 1.77576 1.08773 1.06516 1.23437 0.73972 0.80183 0.95125 1.90599 1.46697 1.60713 1.41448 1.21025 1.02942 0.85666 0.90503 1.42878 1.01572 0.98666 1.80824 1.19059 0.86360 1.14035 1.17984 0.91593 1.25167 0.98934 0.99866 0.94873 1.69829 1.33126 1.38924 1.11729 0.86273 0.85102 0.77857 0.77992 1.19898 1.21531 1.21291 1.21065 0.91077 0.86181 0.99628 1.23044 1.01814 1.01223 0.97720 1.23328 0.99997 1.08964 0.93504 1.21373 0.94519 0.98788 0.97131 1.21856 1.02037 1.00694 0.95895 1.21875 0.98022 0.96006 1.03647 0.90093 0.89009 0.88460 0.77177 0.92243 0.85521 0.93217 0.89442 0.88640 0.90868 0.91157 0.88810 0.90819 0.92842 0.92463 0.92598 0.91758 0.93983 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.77 10.25 36.01 0.37 -1.40 16 2 C 0.35 4.25 6.15 -29.03 -0.18 4.07 16 3 O -0.45 -6.50 15.38 6.01 0.09 -6.41 16 4 C 0.10 1.45 2.17 -69.08 -0.15 1.30 16 5 H 0.11 1.53 7.58 -51.93 -0.39 1.13 16 6 N -0.73 -11.10 4.88 -54.93 -0.27 -11.37 16 7 C 0.49 9.41 6.10 -10.99 -0.07 9.34 16 8 O -0.52 -11.67 13.56 5.55 0.08 -11.59 16 9 C 0.13 2.75 5.81 -5.19 -0.03 2.72 16 10 N -0.53 -12.53 2.28 -167.01 -0.38 -12.91 16 11 C -0.24 -6.47 8.63 -15.06 -0.13 -6.60 16 12 H 0.07 1.81 6.37 -52.49 -0.33 1.48 16 13 C 0.01 0.29 4.97 -17.43 -0.09 0.21 16 14 N -0.89 -24.00 11.40 55.49 0.63 -23.36 16 15 Si 0.90 21.44 29.61 -169.99 -5.03 16.41 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C 0.13 2.75 6.60 -67.93 -0.45 2.30 16 20 C -0.20 -3.99 9.85 -26.72 -0.26 -4.25 16 21 C -0.22 -4.33 10.20 -26.73 -0.27 -4.61 16 22 C -0.10 -1.48 2.33 -90.62 -0.21 -1.69 16 23 C -0.15 -1.91 8.87 37.16 0.33 -1.58 16 24 C -0.14 -2.45 7.68 37.16 0.29 -2.17 16 25 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.40 5.15 8.59 -40.82 -0.35 4.80 16 29 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 30 H 0.13 3.00 5.45 -51.93 -0.28 2.72 16 31 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 32 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.10 2.09 6.33 -51.93 -0.33 1.76 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 37 H 0.07 1.17 7.77 -51.93 -0.40 0.77 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.72 6.62 -51.93 -0.34 0.37 16 41 H 0.06 1.34 5.91 -51.93 -0.31 1.03 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.24 7.22 -51.93 -0.37 0.86 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -29.87 347.67 -7.39 -37.26 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.90 Total: 9.09 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -0.85 Total: -2.35 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.02 Total: -47.65 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.01 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.87 -7.39 -37.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533407140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.584 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds