Wall clock time and date at job start Tue Mar 31 2020 02:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.46866 * 299.99792 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99861 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00522 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47229 * 89.99965 * 9 7 5 11 11 H 1.48500 * 109.47256 * 209.99879 * 9 7 5 12 12 H 1.48499 * 109.47161 * 329.99530 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 14 14 N 1.46506 * 109.47075 * 59.99940 * 13 2 1 15 15 C 1.34777 * 120.00264 * 179.97438 * 14 13 2 16 16 O 1.21284 * 119.99754 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99757 * 180.02562 * 15 14 13 18 18 H 1.08998 * 112.85281 * 51.69647 * 17 15 14 19 19 C 1.53780 * 113.61489 * 280.49478 * 17 15 14 20 20 C 1.53780 * 87.08232 * 220.02035 * 19 17 15 21 21 C 1.53779 * 87.07962 * 25.43674 * 20 19 17 22 22 H 1.08998 * 113.61834 * 89.11563 * 21 20 19 23 23 C 1.50701 * 113.61276 * 220.01936 * 21 20 19 24 24 N 1.34779 * 119.99983 * 277.49895 * 23 21 20 25 25 O 1.21284 * 120.00058 * 97.49308 * 23 21 20 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 0.96992 * 120.00310 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47486 * 180.02562 * 13 2 1 36 36 H 1.09001 * 109.47362 * 300.00732 * 13 2 1 37 37 H 0.96999 * 119.99689 * 0.02562 * 14 13 2 38 38 H 1.09002 * 113.61897 * 334.57246 * 19 17 15 39 39 H 1.09003 * 113.61496 * 105.39256 * 19 17 15 40 40 H 1.09001 * 113.61397 * 139.98534 * 20 19 17 41 41 H 1.08998 * 113.61528 * 270.88664 * 20 19 17 42 42 H 0.97006 * 120.00042 * 359.97438 * 24 23 21 43 43 H 0.97006 * 120.00117 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5377 -0.0110 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8712 -0.4817 3.7319 8 7 2.6272 -1.5510 3.8527 9 14 1.2479 0.3984 5.2572 10 1 -0.0598 -0.1775 5.6614 11 1 2.2263 0.2283 6.3613 12 1 1.0820 1.8441 4.9613 13 6 2.0400 -0.7213 -1.2492 14 7 1.5517 -0.0307 -2.4454 15 6 1.8777 -0.4908 -3.6696 16 8 2.5750 -1.4769 -3.7808 17 6 1.3758 0.2200 -4.8999 18 1 1.5848 1.2896 -4.8857 19 6 -0.0816 -0.1183 -5.2553 20 6 0.3634 -0.1336 -6.7272 21 6 1.7740 -0.4700 -6.2154 22 1 1.9567 -1.5393 -6.1096 23 6 2.8727 0.2419 -6.9618 24 7 3.3218 -0.2523 -8.1325 25 8 3.3527 1.2595 -6.5091 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 2.8615 -1.8824 4.7336 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -1.7489 -1.2493 37 1 0.9943 0.7582 -2.3564 38 1 -0.4063 -1.0915 -4.8871 39 1 -0.7853 0.6799 -5.0189 40 1 -0.0909 -0.9331 -7.3125 41 1 0.2960 0.8393 -7.2139 42 1 2.9381 -1.0664 -8.4945 43 1 4.0293 0.2057 -8.6128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563399800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:09 Heat of formation + Delta-G solvation = -83.128212 kcal Electronic energy + Delta-G solvation = -22471.879394 eV Core-core repulsion = 19130.607474 eV Total energy + Delta-G solvation = -3341.271919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91114 -39.15733 -37.56377 -36.61892 -33.85887 -33.54401 -32.05281 -27.87600 -27.04583 -26.94789 -26.48463 -25.40978 -22.85080 -21.73015 -20.51000 -19.52827 -18.41958 -17.92936 -17.21791 -16.58502 -16.29433 -15.58853 -15.18339 -14.79904 -14.64355 -14.49507 -14.10732 -13.58743 -13.26075 -13.09434 -12.82582 -12.71896 -12.33622 -12.05745 -12.02203 -11.76121 -11.26138 -11.09600 -10.99444 -10.85632 -10.83711 -10.61773 -10.38195 -10.23733 -10.02042 -9.93707 -9.85473 -9.64209 -9.12053 -8.90411 -8.67704 -8.34671 -5.98659 -3.99924 2.41516 2.82261 3.21848 3.31783 3.38801 3.40709 3.57051 4.08136 4.24486 4.40308 4.46234 4.55601 4.92078 5.11594 5.34180 5.36834 5.38773 5.42807 5.54625 5.56824 5.65018 5.68120 5.77976 6.04586 6.20068 6.25962 6.31787 6.42431 6.52172 6.60600 6.65508 6.80602 7.06946 7.08450 7.10107 7.15171 7.65636 7.78153 7.79978 8.00261 8.04366 8.41541 8.47935 9.04953 9.63173 11.12864 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038221 B = 0.003096 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.414791 B = 9042.844419 C = 9197.155977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.127 3.873 14 N -0.717 5.717 15 C 0.519 3.481 16 O -0.549 6.549 17 C -0.116 4.116 18 H 0.125 0.875 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.118 4.118 22 H 0.128 0.872 23 C 0.530 3.470 24 N -0.855 5.855 25 O -0.541 6.541 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.402 0.598 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 2.777 -23.364 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.004 3.996 14 N -0.368 5.368 15 C 0.304 3.696 16 O -0.427 6.427 17 C -0.138 4.138 18 H 0.143 0.857 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.139 4.139 22 H 0.146 0.854 23 C 0.315 3.685 24 N -0.418 5.418 25 O -0.417 6.417 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.230 0.770 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.029 2.596 -22.830 23.521 hybrid contribution -0.263 0.493 0.638 0.848 sum -5.292 3.089 -22.192 23.022 Atomic orbital electron populations 1.21755 0.95271 1.01090 1.00239 1.20903 0.95470 0.95883 0.95057 1.21762 1.00594 0.95873 1.00246 1.19088 0.96359 0.95184 0.89502 1.21188 1.31119 1.12051 0.90526 0.92246 1.25014 0.95309 0.95107 0.99085 1.69963 1.36954 1.23099 1.23423 0.86648 0.78544 0.80046 0.83073 1.20786 1.21347 1.19936 1.21630 0.98933 0.95956 0.83032 1.46170 1.52976 1.31851 1.05799 1.20289 0.80170 0.84531 0.84574 1.90670 1.38244 1.26869 1.86888 1.22682 0.97301 1.02125 0.91671 0.85710 1.22819 0.94470 1.03282 0.95561 1.22813 0.93241 1.02761 0.97172 1.22686 0.93612 1.02299 0.95322 0.85447 1.20474 0.82881 0.84462 0.80717 1.43849 1.42472 1.31054 1.24468 1.90745 1.58624 1.25078 1.67301 0.95203 0.91459 0.93411 0.91447 0.93368 0.95177 0.96383 0.96365 0.93050 0.91889 0.91875 0.76605 0.89069 0.89862 0.90003 0.89372 0.77034 0.77003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 3 C -0.13 -2.31 8.05 37.15 0.30 -2.01 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.65 7.65 -34.44 -0.26 -13.91 16 6 H 0.06 1.53 5.68 -52.48 -0.30 1.23 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 14 N -0.72 -10.72 4.96 -60.29 -0.30 -11.02 16 15 C 0.52 7.91 7.35 -10.99 -0.08 7.83 16 16 O -0.55 -10.39 15.92 5.55 0.09 -10.30 16 17 C -0.12 -1.31 3.47 -90.96 -0.32 -1.62 16 18 H 0.13 1.44 7.44 -51.93 -0.39 1.05 16 19 C -0.12 -0.98 7.63 -25.92 -0.20 -1.18 16 20 C -0.12 -0.81 7.63 -25.92 -0.20 -1.01 16 21 C -0.12 -1.15 3.45 -90.96 -0.31 -1.46 16 22 H 0.13 1.28 7.47 -51.93 -0.39 0.90 16 23 C 0.53 5.86 7.63 -10.98 -0.08 5.78 16 24 N -0.86 -5.78 8.87 31.22 0.28 -5.51 16 25 O -0.54 -8.39 16.74 5.55 0.09 -8.29 16 26 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 27 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 5.08 6.16 -40.82 -0.25 4.82 16 38 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 42 H 0.40 1.48 8.83 -40.82 -0.36 1.12 16 43 H 0.40 2.34 8.93 -40.82 -0.36 1.97 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -34.53 347.25 -6.86 -41.40 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.81 Total: 4.50 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.17 Total: -6.42 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.71 Total: -42.41 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.18 Total: -18.59 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.53 -6.86 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563399800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.729 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds