Wall clock time and date at job start Tue Mar 31 2020 02:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47425 * 239.99858 * 2 1 3 5 5 C 1.50700 * 109.47024 * 59.99995 * 4 2 1 6 6 H 1.08002 * 120.00422 * 0.02562 * 5 4 2 7 7 C 1.37887 * 120.00014 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99468 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00145 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46767 * 60.00149 * 9 7 5 11 11 H 1.48496 * 109.47035 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47019 * 300.00369 * 9 7 5 13 13 C 1.52998 * 109.46897 * 119.99689 * 2 1 3 14 14 N 1.46491 * 109.47234 * 300.00019 * 13 2 1 15 15 C 1.34779 * 120.00144 * 180.02562 * 14 13 2 16 16 O 1.21279 * 119.99932 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00238 * 180.02562 * 15 14 13 18 18 H 1.08996 * 112.85007 * 311.19746 * 17 15 14 19 19 C 1.53789 * 113.61396 * 82.50181 * 17 15 14 20 20 C 1.53777 * 87.08021 * 139.98126 * 19 17 15 21 21 C 1.53781 * 87.08560 * 334.56789 * 20 19 17 22 22 H 1.08994 * 113.69019 * 270.87589 * 21 20 19 23 23 C 1.50696 * 113.61663 * 139.97852 * 21 20 19 24 24 N 1.34777 * 120.00076 * 82.50825 * 23 21 20 25 25 O 1.21281 * 120.00074 * 262.50327 * 23 21 20 26 26 H 1.08998 * 109.47548 * 300.00374 * 1 2 3 27 27 H 1.09008 * 109.46997 * 60.00392 * 1 2 3 28 28 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47004 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46928 * 299.99651 * 3 2 1 31 31 H 1.08998 * 109.47277 * 59.99460 * 3 2 1 32 32 H 1.08998 * 109.47166 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47312 * 300.00253 * 4 2 1 34 34 H 0.97004 * 119.99283 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.46784 * 179.97438 * 13 2 1 36 36 H 1.08997 * 109.47536 * 60.00422 * 13 2 1 37 37 H 0.97006 * 120.00480 * 0.02562 * 14 13 2 38 38 H 1.09001 * 113.61236 * 254.53158 * 19 17 15 39 39 H 1.08997 * 113.61202 * 25.34727 * 19 17 15 40 40 H 1.08997 * 113.61563 * 220.01740 * 20 19 17 41 41 H 1.09006 * 113.61299 * 89.11601 * 20 19 17 42 42 H 0.97001 * 120.00485 * 180.02562 * 24 23 21 43 43 H 0.97005 * 119.99790 * 359.72082 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3807 7 6 1.8705 -0.4823 -3.7320 8 7 2.6258 -1.5521 -3.8525 9 14 1.2473 0.3978 -5.2573 10 1 1.7423 1.7979 -5.2578 11 1 1.7414 -0.3029 -6.4697 12 1 -0.2378 0.3978 -5.2567 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4453 15 6 1.8776 -0.4907 3.6695 16 8 2.5756 -1.4762 3.7808 17 6 1.3748 0.2194 4.8999 18 1 1.5381 1.2965 4.8635 19 6 -0.0577 -0.1752 5.2968 20 6 0.4228 -0.1452 6.7573 21 6 1.8341 -0.4291 6.2165 22 1 2.0622 -1.4909 6.1238 23 6 2.9182 0.3428 6.9235 24 7 3.4165 -0.1106 8.0908 25 8 3.3423 1.3720 6.4421 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7208 -1.2494 33 1 1.6767 -1.7489 -1.2492 34 1 2.8595 -1.8839 -4.7336 35 1 3.1300 -0.7216 1.2490 36 1 1.6767 -1.7488 1.2494 37 1 0.9936 0.7579 2.3564 38 1 -0.8007 0.5881 5.0658 39 1 -0.3486 -1.1674 4.9518 40 1 0.0181 -0.9530 7.3668 41 1 0.3246 0.8325 7.2292 42 1 4.1141 0.3864 8.5462 43 1 3.0745 -0.9317 8.4779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563399802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:11 Heat of formation + Delta-G solvation = -83.093684 kcal Electronic energy + Delta-G solvation = -22471.722164 eV Core-core repulsion = 19130.451741 eV Total energy + Delta-G solvation = -3341.270422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91268 -39.15940 -37.56659 -36.61192 -33.86157 -33.54354 -32.05109 -27.87400 -27.05174 -26.94579 -26.48198 -25.40916 -22.84921 -21.72761 -20.50967 -19.52453 -18.41781 -17.93066 -17.21930 -16.58104 -16.28931 -15.59450 -15.18190 -14.79631 -14.64854 -14.49683 -14.10598 -13.58807 -13.26766 -13.09352 -12.82329 -12.71658 -12.33997 -12.04857 -12.01428 -11.75882 -11.26001 -11.09309 -10.98070 -10.85935 -10.84819 -10.60816 -10.37890 -10.24885 -10.02267 -9.93951 -9.85035 -9.64402 -9.11796 -8.91050 -8.67620 -8.34204 -5.98404 -3.99658 2.41266 2.81605 3.21795 3.33169 3.38464 3.39706 3.57190 4.08454 4.24671 4.40912 4.46409 4.55648 4.92234 5.11605 5.34408 5.36995 5.38715 5.43041 5.54827 5.56796 5.65178 5.68096 5.78231 6.04643 6.20309 6.26161 6.31882 6.42581 6.51995 6.60773 6.65639 6.80780 7.06727 7.08659 7.10225 7.15350 7.65568 7.78435 7.80012 8.00402 8.04104 8.41714 8.47915 9.04960 9.63277 11.13091 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037797 B = 0.003099 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.631116 B = 9033.797502 C = 9173.281170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.127 3.873 14 N -0.717 5.717 15 C 0.519 3.481 16 O -0.549 6.549 17 C -0.116 4.116 18 H 0.124 0.876 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.118 4.118 22 H 0.128 0.872 23 C 0.529 3.471 24 N -0.855 5.855 25 O -0.541 6.541 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.399 0.601 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.400 0.600 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 2.798 23.445 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.368 5.368 15 C 0.304 3.696 16 O -0.427 6.427 17 C -0.138 4.138 18 H 0.142 0.858 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.140 4.140 22 H 0.146 0.854 23 C 0.314 3.686 24 N -0.418 5.418 25 O -0.418 6.418 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.234 0.766 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.230 0.770 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.797 2.608 22.890 23.533 hybrid contribution -0.246 0.532 -0.633 0.863 sum -5.043 3.140 22.257 23.036 Atomic orbital electron populations 1.21755 0.95270 1.01097 1.00238 1.20904 0.95470 0.95884 0.95059 1.21765 1.00595 0.95871 1.00243 1.19081 0.96349 0.95181 0.89485 1.21157 1.31232 1.12051 0.90541 0.92303 1.25016 0.95321 0.95086 0.99074 1.69959 1.36960 1.22991 1.23531 0.86707 0.79124 0.79782 0.82660 1.20318 1.21405 1.20335 1.21626 0.98933 0.95954 0.83039 1.46171 1.52928 1.31869 1.05805 1.20287 0.80179 0.84511 0.84577 1.90667 1.38252 1.26898 1.86883 1.22684 0.97268 1.02217 0.91640 0.85770 1.22810 0.94678 1.03121 0.95445 1.22811 0.93098 1.02894 0.97166 1.22694 0.93672 1.02090 0.95511 0.85388 1.20482 0.82443 0.85053 0.80592 1.43848 1.43255 1.29817 1.24915 1.90745 1.60531 1.24818 1.65660 0.95199 0.91464 0.93409 0.93369 0.91456 0.95168 0.96373 0.96375 0.92994 0.91889 0.91874 0.76597 0.89877 0.89054 0.90002 0.89374 0.77001 0.77030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.07 -1.40 0.54 -154.51 -0.08 -1.49 16 3 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 4 C 0.04 0.91 4.04 -27.88 -0.11 0.79 16 5 C -0.51 -13.69 7.65 -34.44 -0.26 -13.95 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.13 2.31 4.56 -4.05 -0.02 2.30 16 14 N -0.72 -10.75 4.96 -60.30 -0.30 -11.05 16 15 C 0.52 7.92 7.35 -10.98 -0.08 7.84 16 16 O -0.55 -10.37 15.90 5.56 0.09 -10.28 16 17 C -0.12 -1.31 3.47 -90.95 -0.32 -1.63 16 18 H 0.12 1.43 7.43 -51.93 -0.39 1.04 16 19 C -0.12 -0.98 7.63 -25.92 -0.20 -1.18 16 20 C -0.12 -0.81 7.63 -25.92 -0.20 -1.01 16 21 C -0.12 -1.15 3.47 -90.96 -0.32 -1.47 16 22 H 0.13 1.29 7.43 -51.93 -0.39 0.91 16 23 C 0.53 5.85 7.63 -10.99 -0.08 5.76 16 24 N -0.86 -5.77 8.87 31.22 0.28 -5.50 16 25 O -0.54 -8.37 16.73 5.56 0.09 -8.28 16 26 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 27 H 0.07 1.27 6.62 -51.92 -0.34 0.93 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.30 6.62 -51.92 -0.34 0.96 16 31 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.40 5.10 6.16 -40.82 -0.25 4.85 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 42 H 0.40 2.33 8.93 -40.82 -0.36 1.97 16 43 H 0.40 1.48 8.83 -40.82 -0.36 1.12 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -34.49 347.20 -6.87 -41.36 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.80 Total: 4.58 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.17 Total: -6.49 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.71 Total: -42.45 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.18 Total: -18.55 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.49 -6.87 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563399802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.733 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds