Wall clock time and date at job start Tue Mar 31 2020 02:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47425 * 239.99858 * 2 1 3 5 5 C 1.50700 * 109.47024 * 59.99995 * 4 2 1 6 6 H 1.08002 * 120.00422 * 0.02562 * 5 4 2 7 7 C 1.37887 * 120.00014 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99468 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00145 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46767 * 60.00149 * 9 7 5 11 11 H 1.48496 * 109.47035 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47019 * 300.00369 * 9 7 5 13 13 C 1.52998 * 109.46897 * 119.99689 * 2 1 3 14 14 N 1.46491 * 109.47234 * 300.00019 * 13 2 1 15 15 C 1.34779 * 120.00144 * 180.02562 * 14 13 2 16 16 O 1.21279 * 119.99932 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00238 * 180.02562 * 15 14 13 18 18 H 1.08996 * 112.85007 * 311.19746 * 17 15 14 19 19 C 1.53789 * 113.61396 * 82.50181 * 17 15 14 20 20 C 1.53777 * 87.08021 * 139.98126 * 19 17 15 21 21 C 1.53781 * 87.08560 * 334.56789 * 20 19 17 22 22 H 1.08994 * 113.69019 * 270.87589 * 21 20 19 23 23 C 1.50696 * 113.61663 * 139.97852 * 21 20 19 24 24 N 1.34777 * 120.00076 * 82.50825 * 23 21 20 25 25 O 1.21281 * 120.00074 * 262.50327 * 23 21 20 26 26 H 1.08998 * 109.47548 * 300.00374 * 1 2 3 27 27 H 1.09008 * 109.46997 * 60.00392 * 1 2 3 28 28 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47004 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46928 * 299.99651 * 3 2 1 31 31 H 1.08998 * 109.47277 * 59.99460 * 3 2 1 32 32 H 1.08998 * 109.47166 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47312 * 300.00253 * 4 2 1 34 34 H 0.97004 * 119.99283 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.46784 * 179.97438 * 13 2 1 36 36 H 1.08997 * 109.47536 * 60.00422 * 13 2 1 37 37 H 0.97006 * 120.00480 * 0.02562 * 14 13 2 38 38 H 1.09001 * 113.61236 * 254.53158 * 19 17 15 39 39 H 1.08997 * 113.61202 * 25.34727 * 19 17 15 40 40 H 1.08997 * 113.61563 * 220.01740 * 20 19 17 41 41 H 1.09006 * 113.61299 * 89.11601 * 20 19 17 42 42 H 0.97001 * 120.00485 * 180.02562 * 24 23 21 43 43 H 0.97005 * 119.99790 * 359.72082 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3807 7 6 1.8705 -0.4823 -3.7320 8 7 2.6258 -1.5521 -3.8525 9 14 1.2473 0.3978 -5.2573 10 1 1.7423 1.7979 -5.2578 11 1 1.7414 -0.3029 -6.4697 12 1 -0.2378 0.3978 -5.2567 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4453 15 6 1.8776 -0.4907 3.6695 16 8 2.5756 -1.4762 3.7808 17 6 1.3748 0.2194 4.8999 18 1 1.5381 1.2965 4.8635 19 6 -0.0577 -0.1752 5.2968 20 6 0.4228 -0.1452 6.7573 21 6 1.8341 -0.4291 6.2165 22 1 2.0622 -1.4909 6.1238 23 6 2.9182 0.3428 6.9235 24 7 3.4165 -0.1106 8.0908 25 8 3.3423 1.3720 6.4421 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7208 -1.2494 33 1 1.6767 -1.7489 -1.2492 34 1 2.8595 -1.8839 -4.7336 35 1 3.1300 -0.7216 1.2490 36 1 1.6767 -1.7488 1.2494 37 1 0.9936 0.7579 2.3564 38 1 -0.8007 0.5881 5.0658 39 1 -0.3486 -1.1674 4.9518 40 1 0.0181 -0.9530 7.3668 41 1 0.3246 0.8325 7.2292 42 1 4.1141 0.3864 8.5462 43 1 3.0745 -0.9317 8.4779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563399802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:10 Heat of formation + Delta-G solvation = -109.341373 kcal Electronic energy + Delta-G solvation = -22472.860349 eV Core-core repulsion = 19130.451741 eV Total energy + Delta-G solvation = -3342.408607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.83391 -40.31421 -38.83941 -37.76969 -35.23522 -34.61230 -33.90509 -29.36558 -28.57346 -27.96531 -27.75261 -26.71025 -24.70934 -22.49877 -21.65509 -20.44506 -19.80425 -18.78544 -18.39289 -18.18971 -17.48084 -16.89646 -16.42373 -16.38906 -15.78653 -15.57987 -15.25647 -15.02840 -14.79361 -14.36914 -13.95244 -13.93103 -13.81848 -13.68017 -12.97701 -12.82497 -12.74948 -12.58424 -12.51778 -12.33197 -12.22575 -12.05619 -11.99765 -11.53967 -11.47067 -11.14294 -10.90521 -10.85130 -10.67104 -10.61142 -10.50891 -10.05841 -8.14061 -6.22131 1.42436 1.44803 1.51990 1.59330 1.63166 2.21683 2.45043 2.68552 3.20219 3.30499 3.55124 3.74201 3.80491 3.96722 4.07439 4.12486 4.22467 4.34274 4.66996 4.69825 4.70905 4.72047 4.78700 4.89597 4.96292 5.02953 5.05813 5.10165 5.12413 5.38543 5.41107 5.47658 5.49327 5.53327 5.57473 5.79731 5.89470 5.89775 6.30017 6.45277 6.59998 6.92833 7.26751 7.34546 7.45629 8.98436 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037797 B = 0.003099 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.631116 B = 9033.797502 C = 9173.281170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.291 1.291 12 H -0.265 1.265 13 C 0.141 3.859 14 N -0.707 5.707 15 C 0.515 3.485 16 O -0.591 6.591 17 C -0.122 4.122 18 H 0.125 0.875 19 C -0.114 4.114 20 C -0.102 4.102 21 C -0.123 4.123 22 H 0.123 0.877 23 C 0.523 3.477 24 N -0.835 5.835 25 O -0.594 6.594 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.068 0.932 32 H -0.018 1.018 33 H -0.013 1.013 34 H 0.260 0.740 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.413 0.587 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.406 0.594 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 4.377 25.294 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.217 1.217 12 H -0.190 1.190 13 C 0.016 3.984 14 N -0.359 5.359 15 C 0.303 3.697 16 O -0.472 6.472 17 C -0.143 4.143 18 H 0.143 0.857 19 C -0.151 4.151 20 C -0.139 4.139 21 C -0.144 4.144 22 H 0.141 0.859 23 C 0.309 3.691 24 N -0.398 5.398 25 O -0.474 6.474 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.001 0.999 33 H 0.005 0.995 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.251 0.749 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.116 0.884 42 H 0.237 0.763 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -7.219 4.190 24.798 26.165 hybrid contribution 0.569 -0.026 -1.131 1.267 sum -6.650 4.163 23.667 24.933 Atomic orbital electron populations 1.21680 0.93189 1.01105 1.01740 1.20711 0.97011 0.96064 0.92745 1.21703 0.99701 0.94909 1.01648 1.18959 0.94083 0.94258 0.92378 1.21573 1.30546 1.12121 0.91067 0.90877 1.25967 0.95636 0.95860 1.02768 1.70122 1.38793 1.24966 1.24174 0.85582 0.79045 0.78688 0.78231 1.19234 1.21677 1.18962 1.21202 0.97424 0.95545 0.84188 1.45990 1.52985 1.32038 1.04850 1.21108 0.79116 0.84012 0.85469 1.90646 1.40054 1.28976 1.87494 1.22815 0.99969 1.01709 0.89848 0.85715 1.22848 0.92761 1.03556 0.95965 1.22793 0.89982 1.04396 0.96741 1.22776 0.95282 1.01301 0.95069 0.85883 1.20773 0.82527 0.84509 0.81299 1.43691 1.42443 1.30079 1.23555 1.90720 1.62322 1.27142 1.67249 0.90995 0.92547 0.94212 0.94855 0.92382 0.91302 0.99933 0.99456 0.93156 0.94323 0.93308 0.74912 0.87694 0.89315 0.87299 0.88421 0.76271 0.75027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 2 C -0.06 -2.51 0.54 -52.18 -0.03 -2.54 16 3 C -0.12 -4.32 8.05 71.98 0.58 -3.74 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.52 -27.94 7.65 25.60 0.20 -27.75 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 9 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 13 C 0.14 5.24 4.56 86.38 0.39 5.63 16 14 N -0.71 -20.50 4.96 -463.08 -2.30 -22.79 16 15 C 0.52 15.43 7.35 87.66 0.64 16.08 16 16 O -0.59 -22.71 15.90 -3.03 -0.05 -22.76 16 17 C -0.12 -2.53 3.47 -11.01 -0.04 -2.56 16 18 H 0.12 2.64 7.43 -2.39 -0.02 2.62 16 19 C -0.11 -1.43 7.63 31.12 0.24 -1.20 16 20 C -0.10 -0.98 7.63 31.12 0.24 -0.74 16 21 C -0.12 -2.17 3.47 -11.01 -0.04 -2.21 16 22 H 0.12 2.33 7.43 -2.39 -0.02 2.31 16 23 C 0.52 10.91 7.63 87.66 0.67 11.58 16 24 N -0.83 -9.77 8.87 -173.53 -1.54 -11.31 16 25 O -0.59 -18.16 16.73 -3.03 -0.05 -18.21 16 26 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 27 H 0.06 2.02 6.62 -2.38 -0.02 2.01 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.06 2.16 6.62 -2.38 -0.02 2.14 16 31 H 0.07 1.88 6.86 -2.39 -0.02 1.87 16 32 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 33 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.41 9.45 6.16 -92.70 -0.57 8.88 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 1.22 8.09 -2.39 -0.02 1.20 16 40 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.10 0.83 8.09 -2.38 -0.02 0.81 16 42 H 0.41 4.10 8.93 -92.71 -0.83 3.27 16 43 H 0.42 2.07 8.83 -92.70 -0.82 1.25 16 Total: -1.00 -78.87 347.20 1.21 -77.66 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -1.18 Total: 17.48 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 4.01 Total: -8.49 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -3.55 Total: -91.62 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.10 Total: -40.96 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -78.87 1.21 -77.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563399802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.686 kcal (2) G-P(sol) polarization free energy of solvation -78.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds