Wall clock time and date at job start Tue Mar 31 2020 02:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47536 * 2 1 4 4 C 1.53003 * 109.46836 * 240.00519 * 2 1 3 5 5 C 1.53002 * 109.47109 * 300.00155 * 4 2 1 6 6 C 1.53009 * 109.46985 * 299.99989 * 5 4 2 7 7 C 1.52994 * 109.47006 * 60.00078 * 6 5 4 8 8 C 1.53002 * 109.47324 * 120.00793 * 2 1 3 9 9 H 1.09000 * 109.47311 * 179.97438 * 8 2 1 10 10 C 1.53008 * 109.46615 * 299.99690 * 8 2 1 11 11 C 1.50700 * 109.46684 * 184.99852 * 10 8 2 12 12 O 1.21287 * 120.00116 * 0.02562 * 11 10 8 13 13 N 1.34771 * 119.99866 * 179.97438 * 11 10 8 14 14 C 1.46499 * 120.00212 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47215 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00004 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99804 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00499 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99671 * 179.72159 * 18 17 15 21 21 N 1.31414 * 120.00152 * 0.27554 * 20 18 17 22 22 Si 1.86803 * 119.99914 * 180.27723 * 20 18 17 23 23 H 1.48496 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99961 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00007 * 22 20 18 26 26 H 1.09003 * 109.46771 * 299.99471 * 1 2 3 27 27 H 1.08997 * 109.47551 * 59.99324 * 1 2 3 28 28 H 1.08999 * 109.47058 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47664 * 59.99785 * 4 2 1 30 30 H 1.08992 * 109.47039 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47288 * 59.99589 * 5 4 2 32 32 H 1.08999 * 109.47437 * 180.02562 * 5 4 2 33 33 H 1.08994 * 109.46886 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46781 * 299.99910 * 6 5 4 35 35 H 1.08998 * 109.47482 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.47642 * 59.99865 * 7 6 5 37 37 H 1.08998 * 109.47034 * 65.00388 * 10 8 2 38 38 H 1.08994 * 109.46940 * 304.99998 * 10 8 2 39 39 H 0.97005 * 120.00065 * 0.02562 * 13 11 10 40 40 H 1.09004 * 109.47039 * 60.00081 * 14 13 11 41 41 H 1.08994 * 109.47376 * 299.99946 * 14 13 11 42 42 H 0.97000 * 119.99715 * 359.97438 * 17 15 14 43 43 H 0.96991 * 119.99827 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5299 -2.1637 -1.2495 6 6 2.0399 -2.8851 -0.0002 7 6 1.5300 -2.1639 1.2490 8 6 2.0401 -0.7214 1.2491 9 1 3.1301 -0.7218 1.2489 10 6 1.5301 -0.0002 2.4985 11 6 2.1310 -0.6357 3.7257 12 8 2.8925 -1.5728 3.6123 13 7 1.8229 -0.1620 4.9493 14 6 2.4075 -0.7793 6.1423 15 6 1.9061 -0.0683 7.3728 16 8 1.1358 0.8623 7.2640 17 7 2.3136 -0.4664 8.5943 18 6 1.8570 0.1801 9.7137 19 1 1.1705 1.0082 9.6168 20 6 2.2727 -0.2341 10.9733 21 7 3.1075 -1.2420 11.0912 22 14 1.6445 0.6419 12.4989 23 1 0.7233 1.7354 12.0979 24 1 0.9198 -0.3251 13.3619 25 1 2.7917 1.2123 13.2498 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6766 -0.2073 -2.1393 30 1 3.1299 -0.7216 -1.2492 31 1 0.4399 -2.1636 -1.2494 32 1 1.8935 -2.6776 -2.1393 33 1 1.6762 -3.9125 -0.0001 34 1 3.1299 -2.8851 -0.0003 35 1 1.8937 -2.6775 2.1390 36 1 0.4399 -2.1638 1.2491 37 1 0.4438 -0.0771 2.5444 38 1 1.8184 1.0500 2.4548 39 1 1.2141 0.5878 5.0400 40 1 3.4938 -0.7024 6.0960 41 1 2.1192 -1.8295 6.1863 42 1 2.9293 -1.2109 8.6813 43 1 3.3979 -1.5308 11.9704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588077153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:35 Heat of formation + Delta-G solvation = -111.454596 kcal Electronic energy + Delta-G solvation = -22144.672515 eV Core-core repulsion = 18802.172271 eV Total energy + Delta-G solvation = -3342.500244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21613 -38.86741 -37.95096 -34.44930 -33.65430 -32.92620 -31.75868 -31.38583 -28.73464 -27.28679 -25.97901 -24.36768 -22.43665 -21.74625 -20.01662 -19.52807 -18.51259 -18.10240 -17.08608 -15.95449 -15.69699 -15.51394 -15.26904 -14.80386 -14.50591 -14.25258 -14.21501 -13.84491 -13.62954 -13.25166 -12.98816 -12.65530 -12.49769 -12.17859 -12.07979 -11.70042 -11.69597 -11.62971 -11.43133 -11.16761 -11.14678 -10.82435 -10.41864 -10.33920 -10.30418 -10.22623 -10.03043 -9.65810 -9.45446 -8.74462 -8.64020 -8.11197 -6.52589 -3.94577 2.88061 3.09510 3.21438 3.27569 3.43538 3.73246 4.10767 4.50295 4.55993 4.61505 4.88009 4.96547 5.02417 5.11041 5.16009 5.18446 5.23186 5.29017 5.43813 5.49062 5.53247 5.58343 5.68135 5.74347 5.81768 5.89367 5.92666 5.96717 5.98646 6.03609 6.07159 6.12160 6.16730 6.25444 6.45800 6.49045 6.74362 7.45207 7.85251 7.91460 8.43580 8.51239 9.03701 9.38438 9.86270 10.64430 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047717 B = 0.002698 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.647019 B =10376.558282 C =10739.726738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.063 4.063 9 H 0.077 0.923 10 C -0.138 4.138 11 C 0.510 3.490 12 O -0.547 6.547 13 N -0.710 5.710 14 C 0.109 3.891 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.550 5.550 18 C -0.304 4.304 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.932 3.068 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.410 0.590 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 -0.498 -21.213 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.082 4.082 9 H 0.096 0.904 10 C -0.178 4.178 11 C 0.296 3.704 12 O -0.426 6.426 13 N -0.364 5.364 14 C -0.019 4.019 15 C 0.214 3.786 16 O -0.484 6.484 17 N -0.185 5.185 18 C -0.434 4.434 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.535 5.535 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.248 0.752 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.426 -0.636 -21.146 21.294 hybrid contribution -0.134 0.290 1.040 1.088 sum -2.560 -0.347 -20.106 20.271 Atomic orbital electron populations 1.22010 0.95420 1.02221 1.01479 1.21144 0.95948 0.98982 0.94570 0.91327 1.21534 1.00558 0.95721 0.97196 1.21593 1.00851 0.95633 0.97829 1.21492 1.00831 0.98581 0.94502 1.21752 1.00036 0.95211 0.98977 1.20890 1.00857 0.94811 0.91647 0.90443 1.21790 1.02225 1.01065 0.92707 1.20668 0.81535 0.83674 0.84523 1.90646 1.36488 1.28704 1.86746 1.45789 1.48965 1.36725 1.04907 1.20932 0.98789 0.97539 0.84662 1.19779 0.86686 0.87577 0.84589 1.90493 1.39790 1.32126 1.86035 1.41814 1.41238 1.31039 1.04370 1.19780 1.26022 1.14513 0.83073 0.87633 1.25335 0.96434 0.96531 0.99471 1.69622 1.32317 1.26139 1.25424 0.85756 0.78628 0.79170 0.80531 1.19129 1.20600 1.20602 0.92453 0.93074 0.91936 0.92274 0.92062 0.91864 0.92571 0.92416 0.92094 0.89836 0.92443 0.88781 0.88990 0.75214 0.89974 0.89970 0.77044 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.15 37.16 0.30 -0.90 16 2 C -0.09 -0.74 2.72 -90.62 -0.25 -0.99 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.90 5.45 -26.73 -0.15 -1.05 16 5 C -0.12 -0.99 5.65 -26.73 -0.15 -1.14 16 6 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 7 C -0.12 -1.36 4.67 -26.73 -0.12 -1.48 16 8 C -0.06 -0.66 1.61 -90.61 -0.15 -0.81 16 9 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16 10 C -0.14 -1.51 4.67 -27.88 -0.13 -1.64 16 11 C 0.51 7.66 7.55 -10.99 -0.08 7.58 16 12 O -0.55 -9.73 13.97 5.55 0.08 -9.65 16 13 N -0.71 -11.60 5.53 -61.47 -0.34 -11.94 16 14 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 15 C 0.43 9.82 7.85 -10.98 -0.09 9.73 16 16 O -0.60 -15.27 15.24 5.55 0.08 -15.19 16 17 N -0.55 -13.66 5.29 -10.96 -0.06 -13.72 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 19 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 21 N -0.89 -23.93 13.05 55.50 0.72 -23.21 16 22 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 26 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.50 4.81 -51.93 -0.25 0.25 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.16 5.95 -51.93 -0.31 0.85 16 36 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 37 H 0.09 0.91 6.71 -51.93 -0.35 0.56 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.41 6.57 7.44 -40.82 -0.30 6.27 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -30.15 336.57 -7.40 -37.55 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.69 Total: 13.47 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.24 Total: 2.12 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.33 Total: -48.87 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.16 Total: -24.84 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.15 -7.40 -37.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.904 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds