Wall clock time and date at job start Tue Mar 31 2020 02:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47004 * 2 1 4 4 C 1.52996 * 109.47480 * 120.00000 * 2 1 3 5 5 C 1.53003 * 109.47304 * 60.00135 * 4 2 1 6 6 C 1.52999 * 109.46609 * 59.99978 * 5 4 2 7 7 C 1.52996 * 109.47461 * 300.00382 * 6 5 4 8 8 C 1.52995 * 109.47236 * 59.99859 * 7 6 5 9 9 H 1.09007 * 109.46945 * 60.00508 * 8 7 6 10 10 C 1.53006 * 109.47234 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47184 * 295.00598 * 10 8 7 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 8 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 8 14 14 C 1.46504 * 119.99735 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46476 * 179.97438 * 14 13 11 16 16 O 1.21284 * 120.00432 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99403 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99796 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00232 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00005 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00083 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99729 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47483 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47055 * 120.00246 * 22 20 18 25 25 H 1.48508 * 109.47016 * 239.99855 * 22 20 18 26 26 H 1.09006 * 109.47004 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47374 * 299.99605 * 1 2 3 28 28 H 1.09002 * 109.47721 * 60.00112 * 1 2 3 29 29 H 1.09007 * 109.46984 * 300.00308 * 4 2 1 30 30 H 1.08996 * 109.47312 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.46679 * 300.00652 * 5 4 2 32 32 H 1.08992 * 109.47094 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.46971 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47294 * 60.00447 * 6 5 4 35 35 H 1.09006 * 109.46758 * 299.99685 * 7 6 5 36 36 H 1.09003 * 109.47204 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47002 * 55.00002 * 10 8 7 38 38 H 1.08993 * 109.46955 * 175.00440 * 10 8 7 39 39 H 0.96998 * 119.99962 * 359.97438 * 13 11 10 40 40 H 1.08998 * 109.47135 * 299.99021 * 14 13 11 41 41 H 1.08993 * 109.47378 * 60.00104 * 14 13 11 42 42 H 0.97002 * 120.00116 * 0.02562 * 17 15 14 43 43 H 0.96999 * 120.00175 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1637 -1.2493 8 6 2.0400 -0.7212 -1.2492 9 1 3.1301 -0.7211 -1.2493 10 6 1.5295 0.0003 -2.4982 11 6 2.1298 -0.6348 -3.7259 12 8 2.8914 -1.5719 -3.6130 13 7 1.8212 -0.1608 -4.9492 14 6 2.4053 -0.7779 -6.1426 15 6 1.9023 -0.0673 -7.3728 16 8 1.1314 0.8626 -7.2634 17 7 2.3091 -0.4653 -8.5945 18 6 1.8512 0.1807 -9.7136 19 1 1.1647 1.0088 -9.6162 20 6 2.2702 -0.2299 -10.9732 21 7 3.1050 -1.2378 -11.0918 22 14 1.6467 0.6509 -12.4980 23 1 0.7247 1.7435 -12.0964 24 1 2.7962 1.2230 -13.2440 25 1 0.9239 -0.3134 -13.3659 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6766 -0.2074 2.1392 30 1 3.1300 -0.7208 1.2494 31 1 0.4401 -2.1638 1.2492 32 1 1.8939 -2.6777 2.1389 33 1 1.6765 -3.9125 -0.0003 34 1 3.1301 -2.8849 -0.0001 35 1 0.4401 -2.1638 -1.2493 36 1 1.8932 -2.6777 -2.1393 37 1 0.4431 -0.0767 -2.5437 38 1 1.8178 1.0505 -2.4544 39 1 1.2124 0.5889 -5.0394 40 1 3.4916 -0.7008 -6.0968 41 1 2.1170 -1.8281 -6.1867 42 1 2.9253 -1.2093 -8.6820 43 1 3.3972 -1.5247 -11.9711 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588077155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:38 Heat of formation + Delta-G solvation = -111.447121 kcal Electronic energy + Delta-G solvation = -22144.842525 eV Core-core repulsion = 18802.342606 eV Total energy + Delta-G solvation = -3342.499919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.21669 -38.86824 -37.95218 -34.44931 -33.65480 -32.92719 -31.75864 -31.38643 -28.73421 -27.28646 -25.97941 -24.36762 -22.43687 -21.74644 -20.01647 -19.52797 -18.51228 -18.10215 -17.08600 -15.95468 -15.69744 -15.51352 -15.26893 -14.80390 -14.50617 -14.25259 -14.21471 -13.84493 -13.62978 -13.25176 -12.98828 -12.65539 -12.49775 -12.17890 -12.08006 -11.70011 -11.69592 -11.62994 -11.43127 -11.16769 -11.14670 -10.82445 -10.41846 -10.33917 -10.30396 -10.22600 -10.03057 -9.65815 -9.45448 -8.74452 -8.64023 -8.11212 -6.52567 -3.94572 2.88089 3.09509 3.21434 3.27579 3.43559 3.73301 4.10778 4.50293 4.55975 4.61478 4.88027 4.96563 5.02439 5.11042 5.16044 5.18452 5.23150 5.28999 5.43779 5.49057 5.53256 5.58319 5.68141 5.74344 5.81759 5.89361 5.92695 5.96753 5.98634 6.03600 6.07167 6.12146 6.16738 6.25450 6.45756 6.49046 6.74381 7.45202 7.85280 7.91484 8.43586 8.51265 9.03717 9.38463 9.86285 10.64447 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047736 B = 0.002698 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.423084 B =10376.446035 C =10739.854373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.063 4.063 9 H 0.077 0.923 10 C -0.138 4.138 11 C 0.510 3.490 12 O -0.547 6.547 13 N -0.710 5.710 14 C 0.109 3.891 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.550 5.550 18 C -0.304 4.304 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.932 3.068 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.410 0.590 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -0.499 21.215 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.082 4.082 9 H 0.096 0.904 10 C -0.178 4.178 11 C 0.296 3.704 12 O -0.426 6.426 13 N -0.364 5.364 14 C -0.019 4.019 15 C 0.214 3.786 16 O -0.484 6.484 17 N -0.185 5.185 18 C -0.434 4.434 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.535 5.535 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.248 0.752 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.411 -0.636 21.149 21.295 hybrid contribution -0.130 0.294 -1.040 1.088 sum -2.541 -0.342 20.109 20.272 Atomic orbital electron populations 1.22010 0.95420 1.02222 1.01479 1.21142 0.95949 0.98982 0.94572 0.91327 1.21534 1.00559 0.95721 0.97195 1.21589 1.00851 0.95630 0.97829 1.21491 1.00832 0.98581 0.94502 1.21749 1.00039 0.95208 0.98975 1.20888 1.00855 0.94808 0.91649 0.90441 1.21791 1.02228 1.01066 0.92705 1.20668 0.81533 0.83672 0.84528 1.90645 1.36479 1.28702 1.86754 1.45790 1.48968 1.36727 1.04906 1.20933 0.98788 0.97547 0.84656 1.19776 0.86695 0.87567 0.84585 1.90491 1.39766 1.32155 1.86026 1.41815 1.41202 1.31085 1.04365 1.19779 1.25921 1.14604 0.83088 0.87635 1.25332 0.96409 0.96556 0.99470 1.69621 1.32289 1.26177 1.25414 0.85758 0.78618 0.79184 0.80528 1.19129 1.20603 1.20597 0.91937 0.93075 0.92450 0.92281 0.92062 0.91862 0.92570 0.92418 0.92094 0.92448 0.89840 0.88781 0.88990 0.75216 0.89969 0.89975 0.77044 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.15 37.15 0.30 -0.90 16 2 C -0.09 -0.74 2.72 -90.63 -0.25 -0.99 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.90 5.45 -26.73 -0.15 -1.05 16 5 C -0.12 -0.99 5.65 -26.73 -0.15 -1.14 16 6 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 7 C -0.12 -1.36 4.67 -26.74 -0.12 -1.48 16 8 C -0.06 -0.66 1.61 -90.62 -0.15 -0.81 16 9 H 0.08 0.93 7.96 -51.93 -0.41 0.52 16 10 C -0.14 -1.51 4.67 -27.88 -0.13 -1.64 16 11 C 0.51 7.66 7.55 -10.99 -0.08 7.58 16 12 O -0.55 -9.73 13.97 5.56 0.08 -9.65 16 13 N -0.71 -11.60 5.53 -61.47 -0.34 -11.94 16 14 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 15 C 0.43 9.82 7.85 -10.98 -0.09 9.73 16 16 O -0.60 -15.27 15.24 5.55 0.08 -15.19 16 17 N -0.55 -13.67 5.29 -10.96 -0.06 -13.72 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 19 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.89 -23.93 13.05 55.50 0.72 -23.21 16 22 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H 0.06 0.50 4.81 -51.93 -0.25 0.25 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 36 H 0.08 1.16 5.95 -51.93 -0.31 0.85 16 37 H 0.09 0.91 6.71 -51.93 -0.35 0.56 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.41 6.57 7.44 -40.82 -0.30 6.27 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -30.15 336.57 -7.40 -37.55 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -6.69 Total: 13.47 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.24 Total: 2.12 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.33 Total: -48.88 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.16 Total: -24.84 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.15 -7.40 -37.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.896 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds