Wall clock time and date at job start Tue Mar 31 2020 02:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47210 * 2 1 4 4 C 1.53004 * 109.47055 * 119.99374 * 2 1 3 5 5 C 1.52996 * 109.47055 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47367 * 300.00374 * 5 4 2 7 7 C 1.53001 * 109.46828 * 59.99846 * 6 5 4 8 8 C 1.52992 * 109.47382 * 239.99811 * 2 1 3 9 9 H 1.09001 * 109.47102 * 300.00255 * 8 2 1 10 10 C 1.53004 * 109.47382 * 59.99764 * 8 2 1 11 11 C 1.50693 * 109.47326 * 185.00406 * 10 8 2 12 12 O 1.21285 * 120.00287 * 359.97438 * 11 10 8 13 13 N 1.34781 * 120.00175 * 180.02562 * 11 10 8 14 14 C 1.46492 * 120.00049 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47095 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99725 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00216 * 179.97438 * 15 14 13 18 18 C 1.37102 * 120.00136 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00158 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00123 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00118 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00012 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 269.99991 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99481 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00088 * 22 20 18 26 26 H 1.09001 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47455 * 300.00555 * 1 2 3 28 28 H 1.08998 * 109.47079 * 60.00375 * 1 2 3 29 29 H 1.08997 * 109.47448 * 300.00355 * 4 2 1 30 30 H 1.09001 * 109.46601 * 60.00252 * 4 2 1 31 31 H 1.09001 * 109.47156 * 60.00071 * 5 4 2 32 32 H 1.08998 * 109.47079 * 180.02562 * 5 4 2 33 33 H 1.08994 * 109.46998 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.46735 * 299.99955 * 6 5 4 35 35 H 1.09004 * 109.46536 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46893 * 60.00272 * 7 6 5 37 37 H 1.09000 * 109.46679 * 64.99930 * 10 8 2 38 38 H 1.08998 * 109.46969 * 305.00321 * 10 8 2 39 39 H 0.96996 * 119.99273 * 359.97438 * 13 11 10 40 40 H 1.09000 * 109.47579 * 59.99726 * 14 13 11 41 41 H 1.08998 * 109.47204 * 299.99422 * 14 13 11 42 42 H 0.97001 * 120.00302 * 0.02562 * 17 15 14 43 43 H 0.97006 * 119.99833 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7206 1.2497 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7203 -1.2488 8 6 2.0400 -0.7212 -1.2491 9 1 1.6766 -1.7489 -1.2491 10 6 1.5300 -0.0001 -2.4985 11 6 1.9287 -0.7785 -3.7257 12 8 2.5591 -1.8084 -3.6124 13 7 1.5855 -0.3296 -4.9494 14 6 1.9736 -1.0860 -6.1424 15 6 1.4711 -0.3758 -7.3729 16 8 0.8496 0.6601 -7.2640 17 7 1.7124 -0.8915 -8.5945 18 6 1.2548 -0.2457 -9.7139 19 1 0.7014 0.6767 -9.6169 20 6 1.5040 -0.7772 -10.9733 21 7 1.0659 -0.1578 -12.0464 22 14 2.4618 -2.3721 -11.1412 23 1 3.9112 -2.0694 -11.2552 24 1 2.2259 -3.2196 -9.9448 25 1 2.0101 -3.0952 -12.3570 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6766 -0.2073 2.1393 30 1 1.6766 -1.7488 1.2494 31 1 3.9329 0.3072 1.2498 32 1 3.9332 -1.2347 2.1395 33 1 5.1705 -1.4415 0.0010 34 1 3.7176 -2.4693 0.0003 35 1 3.9339 -1.2342 -2.1388 36 1 3.9335 0.3075 -1.2486 37 1 1.9646 0.9985 -2.5444 38 1 0.4437 0.0781 -2.4548 39 1 1.0817 0.4943 -5.0400 40 1 1.5390 -2.0846 -6.0969 41 1 3.0599 -1.1641 -6.1857 42 1 2.2091 -1.7201 -8.6816 43 1 1.2395 -0.5291 -12.9256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588077156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:40 Heat of formation + Delta-G solvation = -107.968350 kcal Electronic energy + Delta-G solvation = -22122.008468 eV Core-core repulsion = 18779.659399 eV Total energy + Delta-G solvation = -3342.349069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.17225 -38.85817 -38.03381 -34.53138 -33.74691 -33.27087 -32.12785 -31.81133 -28.82451 -27.17936 -25.90168 -24.22798 -22.26166 -21.18470 -20.11218 -19.83672 -19.57998 -18.60442 -17.06286 -15.88677 -15.63411 -15.50888 -14.96605 -14.87338 -14.75931 -14.46425 -14.25730 -14.06858 -13.64092 -13.22907 -12.91504 -12.65240 -12.47387 -12.23838 -12.19502 -12.13647 -11.95819 -11.65033 -11.59090 -11.24610 -11.10772 -10.97091 -10.65763 -10.54307 -10.28380 -10.09507 -10.07571 -9.71409 -9.52332 -8.84848 -8.78757 -8.32061 -6.42293 -3.94939 2.79895 2.98320 3.02967 3.11003 3.33024 3.54880 4.02150 4.45328 4.49792 4.53880 4.59856 4.86956 4.92187 5.05603 5.12509 5.17135 5.22447 5.31892 5.37617 5.41997 5.48190 5.57427 5.63124 5.64008 5.69137 5.76676 5.78068 5.81378 5.87965 5.93529 6.04532 6.06990 6.11529 6.18992 6.38684 6.42278 6.62723 7.42627 7.76506 7.98968 8.38674 8.46427 8.80148 9.28295 9.61915 10.69862 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037386 B = 0.002905 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.769964 B = 9635.048424 C =10133.655795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.063 4.063 9 H 0.078 0.922 10 C -0.140 4.140 11 C 0.511 3.489 12 O -0.547 6.547 13 N -0.710 5.710 14 C 0.106 3.894 15 C 0.438 3.562 16 O -0.579 6.579 17 N -0.577 5.577 18 C -0.310 4.310 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.267 1.267 25 H -0.275 1.275 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.411 0.589 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.374 0.626 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 -2.335 23.891 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.082 4.082 9 H 0.096 0.904 10 C -0.180 4.180 11 C 0.298 3.702 12 O -0.426 6.426 13 N -0.365 5.365 14 C -0.022 4.022 15 C 0.224 3.776 16 O -0.464 6.464 17 N -0.214 5.214 18 C -0.439 4.439 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.192 1.192 25 H -0.200 1.200 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.249 0.751 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.208 0.792 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.337 -2.358 23.756 24.105 hybrid contribution 0.456 -0.838 -0.545 1.099 sum 3.793 -3.196 23.211 23.735 Atomic orbital electron populations 1.21933 0.95364 1.01968 1.01726 1.21178 0.95345 0.99588 0.94540 0.91189 1.21567 0.95545 1.00679 0.97190 1.21557 0.95684 1.00644 0.97891 1.21499 0.99905 0.99558 0.94488 1.21732 0.94696 1.00414 0.99017 1.20926 0.95919 0.99691 0.91655 0.90384 1.21823 1.03238 1.00311 0.92614 1.20679 0.79275 0.85789 0.84491 1.90643 1.40358 1.24841 1.86754 1.45778 1.57498 1.28384 1.04803 1.20952 1.00798 0.95686 0.84751 1.19668 0.86126 0.87702 0.84146 1.90537 1.44951 1.25138 1.85744 1.42133 1.50033 1.23368 1.05883 1.19443 1.33571 1.08800 0.82081 0.86089 1.25069 0.97502 0.98282 0.95059 1.69621 1.44386 1.39142 0.98162 0.86668 0.80842 0.83155 0.78808 1.19384 1.19239 1.19966 0.92632 0.92835 0.92210 0.92237 0.92009 0.92194 0.92425 0.92376 0.92067 0.89781 0.92741 0.88918 0.88561 0.75065 0.89853 0.89840 0.79249 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.85 37.16 0.33 -0.82 16 2 C -0.09 -0.72 2.25 -90.62 -0.20 -0.92 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -0.87 5.20 -26.73 -0.14 -1.00 16 5 C -0.12 -0.95 5.92 -26.73 -0.16 -1.10 16 6 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 7 C -0.12 -1.29 4.95 -26.71 -0.13 -1.42 16 8 C -0.06 -0.64 1.37 -90.60 -0.12 -0.76 16 9 H 0.08 0.91 7.96 -51.93 -0.41 0.49 16 10 C -0.14 -1.46 4.96 -27.88 -0.14 -1.60 16 11 C 0.51 7.30 7.55 -10.99 -0.08 7.22 16 12 O -0.55 -9.25 13.97 5.55 0.08 -9.17 16 13 N -0.71 -11.00 5.53 -61.48 -0.34 -11.34 16 14 C 0.11 1.82 6.15 -5.20 -0.03 1.79 16 15 C 0.44 9.58 7.85 -10.99 -0.09 9.50 16 16 O -0.58 -14.56 15.24 5.55 0.08 -14.48 16 17 N -0.58 -13.39 5.09 -10.96 -0.06 -13.45 16 18 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 19 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 20 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 21 N -0.87 -24.93 13.96 55.50 0.77 -24.16 16 22 Si 0.88 18.98 27.74 -169.99 -4.71 14.26 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.44 6.32 -51.93 -0.33 0.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.11 5.95 -51.93 -0.31 0.81 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.87 6.17 -51.93 -0.32 0.55 16 39 H 0.41 6.29 7.44 -40.82 -0.30 5.99 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 43 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -31.19 340.03 -7.18 -38.37 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -6.96 Total: 12.80 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -1.17 Total: 2.04 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.38 Total: -48.95 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.16 Total: -23.65 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.19 -7.18 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.594 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds