Wall clock time and date at job start Tue Mar 31 2020 02:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46765 * 124.34844 * 2 1 4 4 C 1.54480 * 105.47306 * 163.00486 * 3 2 1 5 5 C 1.54637 * 101.79655 * 25.39729 * 4 3 2 6 6 H 1.09001 * 110.48391 * 93.89928 * 5 4 3 7 7 C 1.50698 * 110.48195 * 216.53924 * 5 4 3 8 8 O 1.21274 * 120.00447 * 0.02562 * 7 5 4 9 9 N 1.34783 * 119.99404 * 180.02562 * 7 5 4 10 10 C 1.46506 * 119.99604 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.46859 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47091 * 300.00170 * 11 10 9 13 13 C 1.53002 * 109.46992 * 59.99891 * 11 10 9 14 14 C 1.53000 * 109.46954 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46805 * 180.02562 * 14 11 10 16 16 H 1.07999 * 119.99964 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99697 * 180.02562 * 15 14 11 18 18 N 1.31517 * 120.00250 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99932 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47074 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47282 * 119.99745 * 19 17 15 22 22 H 1.48500 * 109.46950 * 239.99770 * 19 17 15 23 23 C 1.34412 * 124.35012 * 180.02562 * 2 1 3 24 24 O 1.21283 * 124.94095 * 0.38910 * 23 2 1 25 25 H 1.08997 * 109.47143 * 89.99850 * 1 2 3 26 26 H 1.08999 * 109.46787 * 209.99873 * 1 2 3 27 27 H 1.09004 * 109.46951 * 330.00108 * 1 2 3 28 28 H 1.09000 * 110.24541 * 44.00914 * 3 2 1 29 29 H 1.08997 * 110.24493 * 282.00636 * 3 2 1 30 30 H 1.09002 * 110.96988 * 143.53587 * 4 3 2 31 31 H 1.09003 * 110.97155 * 267.26099 * 4 3 2 32 32 H 0.96996 * 120.00415 * 359.97438 * 9 7 5 33 33 H 1.09000 * 109.47039 * 299.99640 * 10 9 7 34 34 H 1.08997 * 109.47248 * 60.00291 * 10 9 7 35 35 H 1.08997 * 109.47533 * 60.00014 * 12 11 10 36 36 H 1.09002 * 109.46793 * 179.97438 * 12 11 10 37 37 H 1.09003 * 109.46853 * 299.99720 * 12 11 10 38 38 H 1.09000 * 109.47343 * 59.99982 * 13 11 10 39 39 H 1.08994 * 109.47120 * 180.02562 * 13 11 10 40 40 H 1.09004 * 109.46905 * 299.99901 * 13 11 10 41 41 H 1.09000 * 109.47092 * 299.99841 * 14 11 10 42 42 H 1.08997 * 109.47101 * 60.00433 * 14 11 10 43 43 H 0.97000 * 120.00147 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7012 0.7487 0.4352 5 6 3.6905 -0.7381 0.0100 6 1 4.1202 -0.8533 -0.9851 7 6 4.4413 -1.5782 1.0108 8 8 4.9462 -1.0571 1.9825 9 7 4.5516 -2.9087 0.8258 10 6 5.2810 -3.7255 1.7990 11 6 5.2560 -5.1899 1.3563 12 6 3.8065 -5.6720 1.2702 13 6 5.9188 -5.3190 -0.0167 14 6 6.0183 -6.0428 2.3722 15 6 5.9942 -7.4851 1.9359 16 1 5.4857 -7.7653 1.0252 17 6 6.6205 -8.4470 2.6997 18 7 7.2394 -8.1058 3.8089 19 14 6.5901 -10.2348 2.1592 20 1 5.8340 -10.3544 0.8868 21 1 7.9808 -10.7143 1.9561 22 1 5.9308 -11.0570 3.2054 23 6 2.2235 -1.1097 -0.0005 24 8 1.7946 -2.2442 -0.0078 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.8987 1.9381 0.7105 29 1 2.3303 1.6432 -1.0003 30 1 4.4754 1.3011 -0.0973 31 1 3.8276 0.8451 1.5135 32 1 4.1474 -3.3255 0.0488 33 1 6.3135 -3.3817 1.8605 34 1 4.8086 -3.6339 2.7769 35 1 3.2638 -5.0643 0.5462 36 1 3.7888 -6.7151 0.9544 37 1 3.3344 -5.5800 2.2483 38 1 6.9514 -4.9755 0.0445 39 1 5.9006 -6.3621 -0.3323 40 1 5.3760 -4.7112 -0.7407 41 1 7.0510 -5.6992 2.4331 42 1 5.5465 -5.9510 3.3505 43 1 7.6797 -8.7826 4.3465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588783935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:23 Heat of formation + Delta-G solvation = -85.275506 kcal Electronic energy + Delta-G solvation = -22826.522273 eV Core-core repulsion = 19485.157240 eV Total energy + Delta-G solvation = -3341.365033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07023 -39.05311 -37.13097 -36.56544 -33.56673 -33.05635 -31.99619 -28.55957 -27.13501 -26.98272 -26.40805 -25.90149 -23.21487 -22.12433 -20.70390 -19.66978 -18.29481 -17.39212 -17.01635 -16.39763 -16.27596 -15.62318 -15.13184 -14.77617 -14.46357 -14.08515 -13.91024 -13.86390 -13.21278 -13.06306 -13.03102 -12.76625 -12.68466 -12.50535 -12.09330 -12.01874 -11.96488 -11.37487 -11.08578 -10.96062 -10.78612 -10.57321 -10.34855 -10.19665 -10.11691 -9.81996 -9.80291 -9.11969 -9.05698 -8.86255 -8.67463 -8.32116 -5.96084 -3.96814 2.17923 2.55119 2.88990 3.33216 3.40581 3.42124 3.45238 3.97811 4.13807 4.48900 4.60227 4.63664 4.90205 4.95808 4.98152 5.16567 5.20815 5.39648 5.40080 5.52190 5.58362 5.69785 5.80701 5.85167 6.13813 6.26200 6.33079 6.34979 6.49179 6.62963 6.71232 6.72696 6.84249 7.13213 7.16917 7.19934 7.68840 7.75980 7.81654 7.85724 8.03284 8.38079 8.46304 9.08242 9.66111 11.15514 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034258 B = 0.003463 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.135772 B = 8084.104951 C = 8503.051999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.623 5.623 3 C 0.102 3.898 4 C -0.117 4.117 5 C -0.151 4.151 6 H 0.133 0.867 7 C 0.525 3.475 8 O -0.542 6.542 9 N -0.706 5.706 10 C 0.128 3.872 11 C -0.072 4.072 12 C -0.128 4.128 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.509 4.509 16 H 0.060 0.940 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.526 3.474 24 O -0.512 6.512 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.404 0.596 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.028 0.972 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.633 19.976 -10.576 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.359 5.359 3 C -0.021 4.021 4 C -0.155 4.155 5 C -0.175 4.175 6 H 0.151 0.849 7 C 0.308 3.692 8 O -0.420 6.420 9 N -0.356 5.356 10 C 0.005 3.995 11 C -0.073 4.073 12 C -0.185 4.185 13 C -0.184 4.184 14 C -0.001 4.001 15 C -0.547 4.547 16 H 0.078 0.922 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 C 0.312 3.688 24 O -0.386 6.386 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.241 0.759 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.494 19.634 -9.734 24.298 hybrid contribution -0.180 -1.145 -0.615 1.312 sum -10.674 18.489 -10.348 23.725 Atomic orbital electron populations 1.21569 0.77603 1.03378 1.01951 1.48085 1.06653 1.07259 1.73866 1.22192 0.90625 0.87310 1.01996 1.22605 0.96111 0.91931 1.04838 1.22196 0.94910 0.97929 1.02505 0.84947 1.19649 0.80568 0.82905 0.86055 1.90691 1.48618 1.72362 1.30289 1.46169 1.54775 1.06713 1.27973 1.21669 0.95761 0.90730 0.91340 1.20907 0.96812 0.91843 0.97725 1.21758 0.94898 1.01450 1.00402 1.21761 0.99276 1.01991 0.95383 1.19095 0.94674 0.93562 0.92804 1.21239 1.33398 0.92041 1.08013 0.92167 1.25015 0.95642 0.98823 0.95078 1.69978 1.35773 1.33435 1.14318 0.86592 0.77615 0.85527 0.78600 1.19781 1.21163 1.21157 1.20366 0.87990 0.84701 0.75754 1.90789 1.78000 1.20632 1.49212 0.92456 0.90485 0.90909 0.89942 0.90782 0.88548 0.87926 0.75920 0.91659 0.91835 0.94644 0.91587 0.93524 0.93391 0.91406 0.95250 0.96362 0.96363 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 10.96 59.85 0.66 1.35 16 2 N -0.62 -5.78 3.33 -180.26 -0.60 -6.38 16 3 C 0.10 0.63 7.35 -3.12 -0.02 0.60 16 4 C -0.12 -0.94 6.48 -25.09 -0.16 -1.10 16 5 C -0.15 -1.64 3.33 -91.75 -0.31 -1.95 16 6 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 7 C 0.52 8.06 7.12 -10.98 -0.08 7.98 16 8 O -0.54 -9.94 15.49 5.56 0.09 -9.86 16 9 N -0.71 -11.36 4.69 -60.29 -0.28 -11.64 16 10 C 0.13 2.40 4.57 -4.04 -0.02 2.38 16 11 C -0.07 -1.46 0.54 -154.50 -0.08 -1.54 16 12 C -0.13 -2.50 8.05 37.16 0.30 -2.20 16 13 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 14 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 15 C -0.51 -13.86 7.65 -34.44 -0.26 -14.13 16 16 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.53 6.57 7.44 -10.84 -0.08 6.49 16 24 O -0.51 -8.23 16.74 5.56 0.09 -8.14 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 1.04 7.00 -51.93 -0.36 0.68 16 32 H 0.40 6.11 5.69 -40.82 -0.23 5.88 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.03 0.62 6.86 -51.93 -0.36 0.26 16 36 H 0.07 1.36 6.62 -51.93 -0.34 1.01 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 40 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -33.88 344.70 -6.68 -40.56 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.91 Total: 1.68 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 0.03 Total: -1.88 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.15 Total: -44.16 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.18 Total: -18.00 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.88 -6.68 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588783935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.714 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds