Wall clock time and date at job start Tue Mar 31 2020 02:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 110.57942 * 2 1 4 4 C 1.55037 * 110.65955 * 123.15568 * 2 1 3 5 5 C 1.54130 * 102.80151 * 155.47560 * 4 2 1 6 6 C 1.53502 * 105.62349 * 338.30573 * 5 4 2 7 7 N 1.48040 * 106.87922 * 358.68825 * 6 5 4 8 8 C 1.46901 * 110.99840 * 145.74422 * 7 6 5 9 9 C 1.50703 * 109.47376 * 65.72345 * 8 7 6 10 10 O 1.21297 * 119.99893 * 6.19880 * 9 8 7 11 11 N 1.34769 * 120.00375 * 186.19406 * 9 8 7 12 12 C 1.37098 * 120.00249 * 179.97438 * 11 9 8 13 13 H 1.08000 * 119.99997 * 0.02562 * 12 11 9 14 14 C 1.38948 * 119.99882 * 180.02562 * 12 11 9 15 15 N 1.31416 * 120.00456 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99847 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47110 * 59.99793 * 16 14 12 18 18 H 1.48500 * 109.47037 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46905 * 299.99833 * 16 14 12 20 20 C 1.52682 * 109.98758 * 97.40219 * 5 4 2 21 21 C 1.53196 * 109.16063 * 65.89610 * 20 5 4 22 22 O 1.42915 * 109.35782 * 56.70521 * 21 20 5 23 23 C 1.42906 * 114.22341 * 298.38251 * 22 21 20 24 24 C 1.52606 * 110.00821 * 219.15827 * 5 4 2 25 25 H 1.09000 * 109.46908 * 181.52292 * 1 2 3 26 26 H 1.09004 * 109.47507 * 301.52189 * 1 2 3 27 27 H 1.09000 * 109.47680 * 61.52158 * 1 2 3 28 28 H 1.09000 * 110.74080 * 37.14993 * 4 2 1 29 29 H 1.09007 * 110.74340 * 273.80687 * 4 2 1 30 30 H 1.08998 * 109.98070 * 118.04784 * 6 5 4 31 31 H 1.09000 * 109.97848 * 239.29877 * 6 5 4 32 32 H 1.09001 * 109.47044 * 185.72139 * 8 7 6 33 33 H 1.08995 * 109.47336 * 305.72102 * 8 7 6 34 34 H 0.97003 * 119.99757 * 0.02562 * 11 9 8 35 35 H 0.96993 * 120.00064 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.55334 * 305.97761 * 20 5 4 37 37 H 1.08999 * 109.51131 * 185.78811 * 20 5 4 38 38 H 1.08998 * 109.49439 * 296.73831 * 21 20 5 39 39 H 1.08997 * 109.49410 * 176.68082 * 21 20 5 40 40 H 1.08999 * 109.49494 * 181.55312 * 23 22 21 41 41 H 1.08992 * 109.49594 * 301.60743 * 23 22 21 42 42 H 1.09002 * 109.51912 * 174.20395 * 24 5 4 43 43 H 1.08998 * 109.56530 * 54.06727 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0206 0.0000 4 6 2.0770 -0.7934 1.2145 5 6 3.4769 -1.2266 0.7369 6 6 3.4267 -1.1697 -0.7962 7 7 2.0541 -0.7566 -1.1663 8 6 2.0635 0.0787 -2.3746 9 6 2.5271 -0.7429 -3.5498 10 8 2.7128 -1.9347 -3.4210 11 7 2.7352 -0.1538 -4.7439 12 6 3.1574 -0.9012 -5.8128 13 1 3.3228 -1.9623 -5.6981 14 6 3.3724 -0.2936 -7.0438 15 7 3.1716 0.9976 -7.1833 16 14 3.9471 -1.3122 -8.5005 17 1 2.9449 -2.3684 -8.7920 18 1 4.1003 -0.4345 -9.6885 19 1 5.2523 -1.9433 -8.1790 20 6 4.5323 -0.2608 1.2703 21 6 4.5948 -0.3770 2.7965 22 8 4.8665 -1.7328 3.1577 23 6 3.8672 -2.6634 2.7361 24 6 3.7723 -2.6481 1.2071 25 1 -0.3633 -1.0273 0.0273 26 1 -0.3634 0.5373 0.8760 27 1 -0.3634 0.4900 -0.9033 28 1 1.4529 -1.6631 1.4202 29 1 2.1498 -0.1525 2.0932 30 1 4.1475 -0.4403 -1.1657 31 1 3.6453 -2.1529 -1.2128 32 1 1.0574 0.4517 -2.5664 33 1 2.7412 0.9200 -2.2296 34 1 2.5869 0.7993 -4.8468 35 1 3.3214 1.4217 -8.0427 36 1 4.2665 0.7594 0.9933 37 1 5.5041 -0.5128 0.8458 38 1 3.6399 -0.0712 3.2240 39 1 5.3871 0.2669 3.1782 40 1 4.1366 -3.6642 3.0738 41 1 2.9048 -2.3821 3.1634 42 1 4.7174 -2.9839 0.7802 43 1 2.9708 -3.3129 0.8853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592181507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:33 Heat of formation + Delta-G solvation = -85.300499 kcal Electronic energy + Delta-G solvation = -23271.193950 eV Core-core repulsion = 19929.827833 eV Total energy + Delta-G solvation = -3341.366117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59611 -38.47740 -37.30764 -34.04599 -33.62820 -31.54424 -31.28891 -31.14944 -28.35969 -26.40044 -25.51444 -23.93948 -23.78318 -22.27216 -20.15624 -19.11077 -18.70932 -17.82554 -16.43953 -16.15872 -15.77770 -15.61448 -15.20331 -14.66594 -14.48740 -14.30244 -14.00864 -13.76851 -13.53495 -13.14070 -12.87378 -12.42650 -12.27732 -12.05498 -11.98668 -11.65081 -11.48503 -11.35677 -11.29663 -11.17975 -11.07505 -10.80984 -10.55976 -10.43124 -10.34933 -10.19394 -10.14214 -9.51506 -9.45519 -8.42157 -7.96254 -7.88819 -6.39607 -3.80340 3.21268 3.26609 3.31119 3.76810 3.94165 4.04025 4.25799 4.48372 4.54148 4.65112 4.92126 4.98563 5.03506 5.12737 5.14217 5.26354 5.32569 5.34348 5.44863 5.52997 5.54677 5.61649 5.64762 5.71386 5.79378 5.85128 5.90232 5.97735 6.01016 6.04505 6.10096 6.17106 6.28249 6.33673 6.39230 6.57371 7.08391 7.25610 7.32333 7.56778 8.08478 8.64608 9.20474 9.57133 10.09486 10.78268 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.003867 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.409724 B = 7238.662693 C = 7709.566864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.057 3.943 3 H 0.048 0.952 4 C -0.110 4.110 5 C -0.071 4.071 6 C 0.058 3.942 7 N -0.486 5.486 8 C 0.037 3.963 9 C 0.444 3.556 10 O -0.577 6.577 11 N -0.566 5.566 12 C -0.298 4.298 13 H 0.102 0.898 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 0.930 3.070 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.143 4.143 21 C 0.062 3.938 22 O -0.386 6.386 23 C 0.061 3.939 24 C -0.139 4.139 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.391 0.609 35 H 0.271 0.729 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 0.873 18.633 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.051 4.051 3 H 0.066 0.934 4 C -0.148 4.148 5 C -0.071 4.071 6 C -0.070 4.070 7 N -0.210 5.210 8 C -0.095 4.095 9 C 0.230 3.770 10 O -0.460 6.460 11 N -0.203 5.203 12 C -0.428 4.428 13 H 0.120 0.880 14 C -0.179 4.179 15 N -0.545 5.545 16 Si 0.757 3.243 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.181 4.181 21 C -0.015 4.015 22 O -0.304 6.304 23 C -0.015 4.015 24 C -0.176 4.176 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.224 0.776 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.264 -0.316 18.504 18.550 hybrid contribution 0.451 1.118 -1.093 1.627 sum -0.813 0.801 17.412 17.449 Atomic orbital electron populations 1.21671 0.93989 1.02481 1.01124 1.22810 0.95993 0.95527 0.90786 0.93400 1.22680 0.95277 1.00049 0.96789 1.21099 0.94849 0.95189 0.96012 1.22858 0.89374 1.02772 0.91983 1.64528 1.19616 1.35787 1.01082 1.22077 1.01654 0.94441 0.91296 1.19736 0.84629 0.88642 0.84032 1.90509 1.56251 1.15280 1.83995 1.41863 1.59243 1.11023 1.08191 1.19642 1.41242 0.94407 0.87489 0.88024 1.25245 0.97712 0.95960 0.98998 1.69604 1.49440 1.09368 1.26088 0.85931 0.79351 0.79102 0.79912 1.19902 1.20991 1.19942 1.22225 0.99812 0.99671 0.96413 1.22622 1.00966 0.83627 0.94262 1.87895 1.47225 1.16747 1.78565 1.22632 0.91555 0.93208 0.94136 1.22170 1.03177 0.96357 0.95929 0.91773 0.92721 0.92600 0.90478 0.91349 0.94142 0.88800 0.89330 0.93689 0.77567 0.91870 0.91055 0.90797 0.93144 0.89155 0.89082 0.93227 0.90947 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.48 37.16 0.35 -1.21 16 2 C 0.06 0.74 2.93 -65.71 -0.19 0.55 16 3 H 0.05 0.60 8.01 -51.92 -0.42 0.18 16 4 C -0.11 -1.24 4.51 -25.06 -0.11 -1.35 16 5 C -0.07 -0.88 0.63 -154.02 -0.10 -0.97 16 6 C 0.06 0.95 4.98 -2.94 -0.01 0.93 16 7 N -0.49 -8.18 4.69 -224.16 -1.05 -9.23 16 8 C 0.04 0.68 5.17 -4.97 -0.03 0.66 16 9 C 0.44 10.66 7.46 -10.99 -0.08 10.58 16 10 O -0.58 -15.75 14.62 5.54 0.08 -15.67 16 11 N -0.57 -14.56 5.29 -10.96 -0.06 -14.61 16 12 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 13 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 16 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.14 -1.59 4.66 -26.79 -0.12 -1.71 16 21 C 0.06 0.61 6.63 37.26 0.25 0.86 16 22 O -0.39 -4.53 10.75 -35.23 -0.38 -4.91 16 23 C 0.06 0.63 6.65 37.26 0.25 0.87 16 24 C -0.14 -1.63 4.58 -26.83 -0.12 -1.75 16 25 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.67 7.40 -51.93 -0.38 0.29 16 28 H 0.08 0.87 7.67 -51.93 -0.40 0.47 16 29 H 0.07 0.65 6.19 -51.93 -0.32 0.33 16 30 H 0.04 0.69 7.18 -51.93 -0.37 0.32 16 31 H 0.09 1.81 6.88 -51.93 -0.36 1.46 16 32 H 0.09 1.50 7.34 -51.93 -0.38 1.12 16 33 H 0.05 0.77 7.94 -51.93 -0.41 0.35 16 34 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.45 6.52 -51.93 -0.34 0.11 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.46 7.51 -51.93 -0.39 0.07 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.96 8.06 -51.93 -0.42 0.55 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -31.21 333.18 -7.83 -39.05 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.98 Total: 8.79 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.17 Total: -0.59 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.39 Total: -47.91 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.30 Total: -20.58 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.21 -7.83 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592181507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.254 kcal (2) G-P(sol) polarization free energy of solvation -31.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds