Wall clock time and date at job start Tue Mar 31 2020 01:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.87009 * 2 1 4 4 C 1.54103 * 109.87329 * 121.00725 * 2 1 3 5 5 C 1.54809 * 104.18558 * 117.39707 * 4 2 1 6 6 H 1.08998 * 110.91300 * 97.35318 * 5 4 2 7 7 N 1.46906 * 110.90599 * 220.91652 * 5 4 2 8 8 C 1.46897 * 111.00041 * 189.99751 * 7 5 4 9 9 C 1.53246 * 109.33522 * 187.25454 * 8 7 5 10 10 N 1.47078 * 108.52375 * 306.16748 * 9 8 7 11 11 C 1.34767 * 120.88538 * 231.18573 * 10 9 8 12 12 O 1.21694 * 120.00127 * 5.23772 * 11 10 9 13 13 C 1.46375 * 120.00475 * 185.23182 * 11 10 9 14 14 H 1.08001 * 119.99645 * 354.99815 * 13 11 10 15 15 C 1.40048 * 120.00531 * 175.00088 * 13 11 10 16 16 N 1.30673 * 119.99599 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00129 * 180.27759 * 15 13 11 18 18 H 1.48501 * 109.47085 * 179.72446 * 17 15 13 19 19 H 1.48497 * 109.47011 * 299.71934 * 17 15 13 20 20 H 1.48497 * 109.47274 * 59.72530 * 17 15 13 21 21 C 1.47082 * 118.23081 * 51.46463 * 10 9 8 22 22 C 1.46900 * 111.00224 * 314.30548 * 7 5 4 23 23 C 1.54997 * 102.09428 * 339.11343 * 5 4 2 24 24 O 1.43749 * 109.87825 * 238.83517 * 2 1 3 25 25 H 1.08990 * 109.46933 * 298.99883 * 1 2 3 26 26 H 1.09006 * 109.46462 * 58.99828 * 1 2 3 27 27 H 1.08997 * 109.47188 * 178.98707 * 1 2 3 28 28 H 1.09004 * 109.46799 * 181.00116 * 3 2 1 29 29 H 1.08993 * 109.47188 * 301.00264 * 3 2 1 30 30 H 1.09005 * 109.47338 * 61.00858 * 3 2 1 31 31 H 1.08999 * 110.48956 * 358.71817 * 4 2 1 32 32 H 1.09004 * 110.48313 * 236.06645 * 4 2 1 33 33 H 1.08995 * 109.49188 * 67.29830 * 8 7 5 34 34 H 1.08991 * 109.51723 * 307.22587 * 8 7 5 35 35 H 1.09003 * 109.62355 * 186.46404 * 9 8 7 36 36 H 1.08997 * 109.62929 * 65.88358 * 9 8 7 37 37 H 0.96998 * 119.99621 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.63017 * 68.24894 * 21 10 9 39 39 H 1.09005 * 109.62208 * 188.82787 * 21 10 9 40 40 H 1.09004 * 109.48958 * 292.70219 * 22 7 5 41 41 H 1.09000 * 109.49515 * 52.75196 * 22 7 5 42 42 H 1.08998 * 110.61608 * 155.52423 * 23 5 4 43 43 H 1.08994 * 110.61622 * 278.52678 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0539 -0.7466 1.2422 5 6 2.8324 -1.9516 0.6603 6 1 3.9003 -1.7386 0.6129 7 7 2.5773 -3.1680 1.4434 8 6 3.4876 -4.2504 1.0462 9 6 3.0733 -5.5462 1.7516 10 7 3.0060 -5.2898 3.1983 11 6 3.6456 -6.0907 4.0733 12 8 4.3665 -6.9829 3.6670 13 6 3.4734 -5.8874 5.5126 14 1 2.8994 -5.0471 5.8744 15 6 4.0528 -6.7824 6.4207 16 7 4.7469 -7.7993 5.9829 17 14 3.8265 -6.5272 8.2572 18 1 4.5278 -7.6070 8.9971 19 1 4.3928 -5.2112 8.6476 20 1 2.3789 -6.5608 8.5869 21 6 2.2169 -4.1396 3.6650 22 6 2.6696 -2.8958 2.8840 23 6 2.2280 -2.0725 -0.7619 24 8 2.0188 -0.6996 -1.1567 25 1 -0.3633 0.4982 0.8988 26 1 -0.3632 0.5294 -0.8809 27 1 -0.3633 -1.0275 -0.0182 28 1 3.1399 1.4313 -0.0180 29 1 1.6758 1.9605 -0.8808 30 1 1.7051 1.9499 0.8989 31 1 1.2236 -1.0906 1.8589 32 1 2.7197 -0.1054 1.8200 33 1 4.5072 -3.9911 1.3311 34 1 3.4363 -4.3915 -0.0333 35 1 3.8107 -6.3237 1.5516 36 1 2.0953 -5.8634 1.3900 37 1 5.1486 -8.4190 6.6118 38 1 1.1581 -4.3242 3.4838 39 1 2.3877 -3.9868 4.7307 40 1 3.7007 -2.6553 3.1434 41 1 2.0251 -2.0539 3.1372 42 1 2.9295 -2.5632 -1.4365 43 1 1.2814 -2.6118 -0.7320 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595513020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:07 Heat of formation + Delta-G solvation = -69.853620 kcal Electronic energy + Delta-G solvation = -23237.946011 eV Core-core repulsion = 19897.249721 eV Total energy + Delta-G solvation = -3340.696290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28659 -38.48729 -36.42360 -33.57811 -33.28955 -32.50963 -30.85908 -29.92925 -27.59028 -26.91792 -25.90239 -25.22714 -22.90170 -21.40281 -20.43575 -20.02909 -18.86838 -16.99084 -16.27573 -16.06439 -15.61428 -15.16525 -14.64627 -14.45681 -14.34998 -14.22439 -13.96124 -13.78869 -13.32117 -13.08520 -12.72890 -12.54008 -12.33329 -12.04661 -11.90415 -11.78883 -11.54747 -11.44123 -11.18186 -11.01898 -10.93003 -10.81966 -10.67588 -10.59741 -10.38076 -10.24630 -9.97636 -9.75476 -8.87747 -8.24752 -7.61233 -7.21240 -6.22203 -4.67538 3.13160 3.18357 3.19833 3.60027 4.00358 4.08725 4.39597 4.52492 4.57141 4.61513 4.70212 4.93910 5.08493 5.15350 5.30435 5.40274 5.46681 5.48095 5.50446 5.61385 5.66077 5.68253 5.70201 5.72660 5.81421 5.82169 5.84352 5.91323 5.97353 6.07807 6.11040 6.23777 6.43089 6.51268 6.68213 6.81988 7.21913 7.22521 7.42421 7.58774 8.10289 8.33608 8.99272 9.41709 10.55014 10.73549 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031303 B = 0.003817 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.266597 B = 7333.425584 C = 7921.931411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 C -0.143 4.143 4 C -0.144 4.144 5 C 0.049 3.951 6 H 0.055 0.945 7 N -0.524 5.524 8 C 0.044 3.956 9 C 0.126 3.874 10 N -0.644 5.644 11 C 0.559 3.441 12 O -0.579 6.579 13 C -0.545 4.545 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.768 5.768 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.268 1.268 20 H -0.267 1.267 21 C 0.129 3.871 22 C 0.037 3.963 23 C 0.059 3.941 24 O -0.371 6.371 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.269 0.731 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.035 0.965 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 15.590 -8.812 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 C -0.200 4.200 4 C -0.182 4.182 5 C -0.060 4.060 6 H 0.073 0.927 7 N -0.251 5.251 8 C -0.084 4.084 9 C 0.001 3.999 10 N -0.383 5.383 11 C 0.365 3.635 12 O -0.461 6.461 13 C -0.582 4.582 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.193 1.193 20 H -0.192 1.192 21 C 0.004 3.996 22 C -0.091 4.091 23 C -0.018 4.018 24 O -0.290 6.290 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.865 14.843 -9.289 18.808 hybrid contribution 0.659 0.383 1.241 1.457 sum -6.205 15.226 -8.048 18.306 Atomic orbital electron populations 1.22237 0.94763 1.02735 1.02153 1.22061 0.93762 0.92952 0.85313 1.21905 1.01671 0.94182 1.02269 1.23196 1.01012 0.96178 0.97801 1.23178 0.98162 0.90254 0.94375 0.92697 1.62027 1.52866 1.05497 1.04666 1.22556 0.93941 0.92514 0.99424 1.21198 1.00708 0.95103 0.82863 1.48240 1.54700 1.30824 1.04553 1.18249 0.78625 0.80207 0.86371 1.90590 1.41215 1.34830 1.79512 1.20933 1.35378 1.12573 0.89293 0.91014 1.25727 0.93114 0.94009 1.00357 1.70004 1.24012 1.10124 1.35537 0.86450 0.79168 0.78606 0.82651 1.20538 1.19281 1.19197 1.21576 0.94590 0.84580 0.98845 1.22760 1.00034 0.99242 0.87073 1.23501 1.00568 0.83637 0.94108 1.88883 1.86076 1.20933 1.33133 0.91673 0.92147 0.91916 0.92017 0.92025 0.91334 0.89074 0.90567 0.94644 0.90890 0.89526 0.93236 0.92012 0.93179 0.88759 0.94622 0.90367 0.89364 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.61 37.16 0.32 -1.15 16 2 C 0.10 1.01 1.19 -90.04 -0.11 0.90 16 3 C -0.14 -1.24 8.67 37.16 0.32 -0.92 16 4 C -0.14 -1.53 4.70 -25.20 -0.12 -1.64 16 5 C 0.05 0.61 2.89 -65.70 -0.19 0.42 16 6 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 7 N -0.52 -7.59 4.50 -223.65 -1.01 -8.59 16 8 C 0.04 0.71 5.51 -3.70 -0.02 0.69 16 9 C 0.13 2.47 6.61 -3.60 -0.02 2.45 16 10 N -0.64 -14.64 3.00 -173.84 -0.52 -15.16 16 11 C 0.56 15.88 7.63 -12.99 -0.10 15.78 16 12 O -0.58 -18.70 14.49 5.19 0.08 -18.62 16 13 C -0.55 -15.12 8.86 -35.63 -0.32 -15.44 16 14 H 0.07 1.80 5.74 -52.49 -0.30 1.49 16 15 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 16 N -0.77 -22.90 11.84 55.55 0.66 -22.24 16 17 Si 0.91 19.82 29.56 -169.99 -5.02 14.80 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 C 0.13 2.38 6.50 -3.37 -0.02 2.35 16 22 C 0.04 0.57 5.26 -3.47 -0.02 0.55 16 23 C 0.06 0.69 6.77 38.21 0.26 0.95 16 24 O -0.37 -4.61 10.86 -35.23 -0.38 -4.99 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.97 6.21 -51.93 -0.32 0.64 16 32 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.99 7.57 -51.93 -0.39 0.60 16 35 H 0.09 1.89 7.04 -51.93 -0.37 1.52 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.80 5.46 -51.93 -0.28 1.51 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.99 5.81 -51.93 -0.30 0.69 16 42 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 43 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -33.37 333.72 -8.27 -41.64 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.99 Total: 0.87 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -0.11 Total: 7.27 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.87 Total: -46.00 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.31 Total: -23.61 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.37 -8.27 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595513020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.210 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds