Wall clock time and date at job start Tue Mar 31 2020 01:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.86964 * 2 1 4 4 C 1.54096 * 109.87779 * 238.83550 * 2 1 3 5 5 C 1.54808 * 104.18751 * 242.60257 * 4 2 1 6 6 H 1.09001 * 110.94086 * 262.66783 * 5 4 2 7 7 N 1.46908 * 110.90496 * 139.07931 * 5 4 2 8 8 C 1.46897 * 110.99710 * 61.54022 * 7 5 4 9 9 C 1.53245 * 109.33706 * 187.25195 * 8 7 5 10 10 N 1.47084 * 108.52125 * 306.16875 * 9 8 7 11 11 C 1.34767 * 120.88420 * 231.16115 * 10 9 8 12 12 O 1.21698 * 120.00086 * 355.14438 * 11 10 9 13 13 C 1.46370 * 120.00313 * 175.14056 * 11 10 9 14 14 H 1.07998 * 119.99909 * 351.78949 * 13 11 10 15 15 C 1.40051 * 120.00067 * 171.78806 * 13 11 10 16 16 N 1.30673 * 120.00132 * 0.02562 * 15 13 11 17 17 Si 1.86808 * 119.99901 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47087 * 89.99556 * 17 15 13 19 19 H 1.48501 * 109.46848 * 210.00312 * 17 15 13 20 20 H 1.48504 * 109.46626 * 329.99785 * 17 15 13 21 21 C 1.47084 * 118.23458 * 51.18880 * 10 9 8 22 22 C 1.46900 * 110.99964 * 185.84397 * 7 5 4 23 23 C 1.54992 * 102.09328 * 20.88303 * 5 4 2 24 24 O 1.43745 * 109.87689 * 121.00408 * 2 1 3 25 25 H 1.09001 * 109.46982 * 300.44671 * 1 2 3 26 26 H 1.09000 * 109.47144 * 60.44832 * 1 2 3 27 27 H 1.08995 * 109.46803 * 180.44747 * 1 2 3 28 28 H 1.08998 * 109.47208 * 179.55582 * 3 2 1 29 29 H 1.09005 * 109.47183 * 299.55155 * 3 2 1 30 30 H 1.09002 * 109.47480 * 59.54804 * 3 2 1 31 31 H 1.09009 * 110.48849 * 123.92673 * 4 2 1 32 32 H 1.08999 * 110.48963 * 1.28373 * 4 2 1 33 33 H 1.09004 * 109.49130 * 67.29657 * 8 7 5 34 34 H 1.08999 * 109.49705 * 307.21523 * 8 7 5 35 35 H 1.08997 * 109.62677 * 186.46284 * 9 8 7 36 36 H 1.09001 * 109.62650 * 65.88168 * 9 8 7 37 37 H 0.96997 * 119.99767 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.62727 * 68.51846 * 21 10 9 39 39 H 1.08995 * 109.62676 * 188.90581 * 21 10 9 40 40 H 1.08997 * 109.49090 * 52.78560 * 22 7 5 41 41 H 1.09006 * 109.49223 * 292.70698 * 22 7 5 42 42 H 1.09006 * 110.62029 * 81.47431 * 23 5 4 43 43 H 1.08995 * 110.62330 * 204.47380 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0540 -0.7499 -1.2400 5 6 2.8325 -1.9533 -0.6548 6 1 3.9005 -1.7405 -0.6075 7 7 2.5774 -3.1719 -1.4347 8 6 3.0281 -3.0120 -2.8236 9 6 2.5834 -4.2272 -3.6445 10 7 3.0607 -5.4452 -2.9721 11 6 3.7502 -6.3843 -3.6494 12 8 3.9095 -6.2741 -4.8509 13 6 4.3077 -7.5370 -2.9401 14 1 4.2831 -7.5704 -1.8610 15 6 4.8729 -8.5964 -3.6609 16 7 4.9030 -8.5557 -4.9667 17 14 5.5837 -10.0678 -2.7556 18 1 4.5240 -11.0904 -2.5642 19 1 6.6947 -10.6490 -3.5513 20 1 6.0973 -9.6334 -1.4317 21 6 2.7649 -5.6113 -1.5409 22 6 3.2024 -4.3416 -0.8029 23 6 2.2282 -2.0703 0.7676 24 8 2.0188 -0.6963 1.1587 25 1 -0.3633 0.5208 0.8860 26 1 -0.3633 0.5069 -0.8940 27 1 -0.3633 -1.0276 0.0080 28 1 3.1400 1.4314 0.0080 29 1 1.6969 1.9529 -0.8940 30 1 1.6838 1.9577 0.8859 31 1 2.7197 -0.1103 -1.8197 32 1 1.2238 -1.0957 -1.8559 33 1 4.1152 -2.9355 -2.8467 34 1 2.5904 -2.1076 -3.2463 35 1 3.0117 -4.1697 -4.6451 36 1 1.4955 -4.2471 -3.7093 37 1 5.2948 -9.2894 -5.4658 38 1 1.6944 -5.7641 -1.4036 39 1 3.3104 -6.4709 -1.1517 40 1 2.8910 -4.4015 0.2399 41 1 4.2871 -4.2466 -0.8542 42 1 1.2814 -2.6098 0.7393 43 1 2.9295 -2.5591 1.4437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595513021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:09 Heat of formation + Delta-G solvation = -72.143505 kcal Electronic energy + Delta-G solvation = -23217.694433 eV Core-core repulsion = 19876.898846 eV Total energy + Delta-G solvation = -3340.795587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27278 -38.50317 -36.42710 -33.58113 -33.28182 -32.52096 -30.76646 -30.08437 -27.59147 -26.70334 -26.14930 -25.17222 -22.85670 -21.38543 -20.43663 -20.09457 -18.83054 -17.04030 -16.19057 -16.11271 -15.63089 -15.16734 -14.75694 -14.43749 -14.22736 -14.18787 -13.96196 -13.80642 -13.37992 -13.08648 -12.74746 -12.51254 -12.37092 -12.06814 -11.82798 -11.80280 -11.54415 -11.42094 -11.20167 -11.04424 -10.94309 -10.80328 -10.71454 -10.64701 -10.35075 -10.22255 -9.97674 -9.75549 -8.88598 -8.26775 -7.61063 -7.22201 -6.22736 -4.67099 3.11823 3.18839 3.21763 3.58371 4.01038 4.09232 4.40939 4.52054 4.57920 4.60335 4.70845 4.94355 5.05849 5.15258 5.30218 5.40528 5.46953 5.47562 5.49518 5.61549 5.65541 5.68672 5.70015 5.72073 5.80679 5.82808 5.84962 5.92203 5.97511 6.07858 6.11395 6.22633 6.43573 6.50366 6.68509 6.81411 7.20411 7.22513 7.42938 7.58382 8.10464 8.33824 8.99589 9.41398 10.54804 10.73164 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.003691 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.265122 B = 7583.891072 C = 8036.971868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 C -0.143 4.143 4 C -0.139 4.139 5 C 0.050 3.950 6 H 0.053 0.947 7 N -0.524 5.524 8 C 0.045 3.955 9 C 0.126 3.874 10 N -0.644 5.644 11 C 0.560 3.440 12 O -0.579 6.579 13 C -0.545 4.545 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.769 5.769 17 Si 0.907 3.093 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.265 1.265 21 C 0.128 3.872 22 C 0.039 3.961 23 C 0.057 3.943 24 O -0.371 6.371 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.269 0.731 38 H 0.050 0.950 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.038 14.588 10.734 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 C -0.200 4.200 4 C -0.177 4.177 5 C -0.059 4.059 6 H 0.071 0.929 7 N -0.250 5.250 8 C -0.084 4.084 9 C 0.002 3.998 10 N -0.383 5.383 11 C 0.366 3.634 12 O -0.461 6.461 13 C -0.582 4.582 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.398 5.398 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.189 1.189 21 C 0.003 3.997 22 C -0.090 4.090 23 C -0.020 4.020 24 O -0.290 6.290 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.353 14.565 10.066 18.810 hybrid contribution 1.178 -0.654 0.362 1.395 sum -5.175 13.911 10.428 18.139 Atomic orbital electron populations 1.22235 0.94767 1.02728 1.02135 1.22073 0.93769 0.92973 0.85277 1.21904 1.01658 0.94183 1.02269 1.23076 1.00950 0.95982 0.97674 1.23159 0.98055 0.90724 0.94009 0.92871 1.62064 1.58818 1.01951 1.02201 1.22546 0.98116 0.99407 0.88342 1.21197 0.97954 0.84059 0.96619 1.48249 1.60176 1.21031 1.08805 1.18257 0.77073 0.81568 0.86475 1.90590 1.62962 1.77541 1.15053 1.20945 1.40715 1.02919 0.93606 0.90950 1.25728 0.94027 0.98861 0.94579 1.70005 1.33501 1.29704 1.06568 0.86390 0.78979 0.81394 0.80124 1.19685 1.20453 1.18879 1.21487 0.99653 0.95946 0.82584 1.22614 0.97051 0.91316 0.98016 1.23538 1.00525 0.83845 0.94121 1.88887 1.86075 1.20827 1.33165 0.92159 0.91682 0.91923 0.92018 0.91350 0.92017 0.90720 0.89213 0.94762 0.90753 0.89659 0.93281 0.92060 0.93215 0.88577 0.90718 0.94453 0.91004 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.61 37.16 0.32 -1.16 16 2 C 0.10 1.01 1.19 -90.04 -0.11 0.91 16 3 C -0.14 -1.24 8.68 37.16 0.32 -0.91 16 4 C -0.14 -1.48 4.75 -25.21 -0.12 -1.60 16 5 C 0.05 0.61 2.81 -65.70 -0.18 0.43 16 6 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 7 N -0.52 -7.56 4.47 -223.94 -1.00 -8.56 16 8 C 0.04 0.70 5.46 -3.70 -0.02 0.68 16 9 C 0.13 2.48 6.58 -3.60 -0.02 2.45 16 10 N -0.64 -14.63 3.01 -174.12 -0.52 -15.15 16 11 C 0.56 15.90 7.61 -12.99 -0.10 15.80 16 12 O -0.58 -18.71 14.55 5.19 0.08 -18.63 16 13 C -0.55 -15.12 8.85 -35.63 -0.32 -15.43 16 14 H 0.07 1.82 5.73 -52.49 -0.30 1.52 16 15 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 16 N -0.77 -22.92 11.86 55.55 0.66 -22.27 16 17 Si 0.91 19.86 29.56 -169.99 -5.02 14.83 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 21 C 0.13 2.37 6.52 -3.60 -0.02 2.34 16 22 C 0.04 0.59 5.48 -3.70 -0.02 0.57 16 23 C 0.06 0.66 6.06 38.21 0.23 0.89 16 24 O -0.37 -4.57 10.86 -35.23 -0.38 -4.95 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.74 7.70 -51.92 -0.40 0.34 16 32 H 0.09 0.99 7.29 -51.93 -0.38 0.61 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.00 6.79 -51.93 -0.35 0.65 16 35 H 0.09 1.85 7.09 -51.93 -0.37 1.49 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.27 7.26 8.29 -40.82 -0.34 6.93 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.84 5.38 -51.93 -0.28 1.56 16 40 H 0.07 0.95 6.79 -51.93 -0.35 0.59 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 43 H 0.09 0.96 7.86 -51.93 -0.41 0.55 16 LS Contribution 334.31 15.07 5.04 5.04 Total: -1.00 -33.38 334.31 -8.34 -41.72 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.05 Total: 0.68 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -0.14 Total: 7.29 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.87 Total: -45.98 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.31 Total: -23.59 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.38 -8.34 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595513021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.420 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds