Wall clock time and date at job start Tue Mar 31 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.86964 * 2 1 4 4 C 1.54096 * 109.87779 * 238.83550 * 2 1 3 5 5 C 1.54808 * 104.18751 * 242.60257 * 4 2 1 6 6 H 1.09001 * 110.94086 * 262.66783 * 5 4 2 7 7 N 1.46908 * 110.90496 * 139.07931 * 5 4 2 8 8 C 1.46897 * 110.99710 * 61.54022 * 7 5 4 9 9 C 1.53245 * 109.33706 * 187.25195 * 8 7 5 10 10 N 1.47084 * 108.52125 * 306.16875 * 9 8 7 11 11 C 1.34767 * 120.88420 * 231.16115 * 10 9 8 12 12 O 1.21698 * 120.00086 * 355.14438 * 11 10 9 13 13 C 1.46370 * 120.00313 * 175.14056 * 11 10 9 14 14 H 1.07998 * 119.99909 * 351.78949 * 13 11 10 15 15 C 1.40051 * 120.00067 * 171.78806 * 13 11 10 16 16 N 1.30673 * 120.00132 * 0.02562 * 15 13 11 17 17 Si 1.86808 * 119.99901 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47087 * 89.99556 * 17 15 13 19 19 H 1.48501 * 109.46848 * 210.00312 * 17 15 13 20 20 H 1.48504 * 109.46626 * 329.99785 * 17 15 13 21 21 C 1.47084 * 118.23458 * 51.18880 * 10 9 8 22 22 C 1.46900 * 110.99964 * 185.84397 * 7 5 4 23 23 C 1.54992 * 102.09328 * 20.88303 * 5 4 2 24 24 O 1.43745 * 109.87689 * 121.00408 * 2 1 3 25 25 H 1.09001 * 109.46982 * 300.44671 * 1 2 3 26 26 H 1.09000 * 109.47144 * 60.44832 * 1 2 3 27 27 H 1.08995 * 109.46803 * 180.44747 * 1 2 3 28 28 H 1.08998 * 109.47208 * 179.55582 * 3 2 1 29 29 H 1.09005 * 109.47183 * 299.55155 * 3 2 1 30 30 H 1.09002 * 109.47480 * 59.54804 * 3 2 1 31 31 H 1.09009 * 110.48849 * 123.92673 * 4 2 1 32 32 H 1.08999 * 110.48963 * 1.28373 * 4 2 1 33 33 H 1.09004 * 109.49130 * 67.29657 * 8 7 5 34 34 H 1.08999 * 109.49705 * 307.21523 * 8 7 5 35 35 H 1.08997 * 109.62677 * 186.46284 * 9 8 7 36 36 H 1.09001 * 109.62650 * 65.88168 * 9 8 7 37 37 H 0.96997 * 119.99767 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.62727 * 68.51846 * 21 10 9 39 39 H 1.08995 * 109.62676 * 188.90581 * 21 10 9 40 40 H 1.08997 * 109.49090 * 52.78560 * 22 7 5 41 41 H 1.09006 * 109.49223 * 292.70698 * 22 7 5 42 42 H 1.09006 * 110.62029 * 81.47431 * 23 5 4 43 43 H 1.08995 * 110.62330 * 204.47380 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0540 -0.7499 -1.2400 5 6 2.8325 -1.9533 -0.6548 6 1 3.9005 -1.7405 -0.6075 7 7 2.5774 -3.1719 -1.4347 8 6 3.0281 -3.0120 -2.8236 9 6 2.5834 -4.2272 -3.6445 10 7 3.0607 -5.4452 -2.9721 11 6 3.7502 -6.3843 -3.6494 12 8 3.9095 -6.2741 -4.8509 13 6 4.3077 -7.5370 -2.9401 14 1 4.2831 -7.5704 -1.8610 15 6 4.8729 -8.5964 -3.6609 16 7 4.9030 -8.5557 -4.9667 17 14 5.5837 -10.0678 -2.7556 18 1 4.5240 -11.0904 -2.5642 19 1 6.6947 -10.6490 -3.5513 20 1 6.0973 -9.6334 -1.4317 21 6 2.7649 -5.6113 -1.5409 22 6 3.2024 -4.3416 -0.8029 23 6 2.2282 -2.0703 0.7676 24 8 2.0188 -0.6963 1.1587 25 1 -0.3633 0.5208 0.8860 26 1 -0.3633 0.5069 -0.8940 27 1 -0.3633 -1.0276 0.0080 28 1 3.1400 1.4314 0.0080 29 1 1.6969 1.9529 -0.8940 30 1 1.6838 1.9577 0.8859 31 1 2.7197 -0.1103 -1.8197 32 1 1.2238 -1.0957 -1.8559 33 1 4.1152 -2.9355 -2.8467 34 1 2.5904 -2.1076 -3.2463 35 1 3.0117 -4.1697 -4.6451 36 1 1.4955 -4.2471 -3.7093 37 1 5.2948 -9.2894 -5.4658 38 1 1.6944 -5.7641 -1.4036 39 1 3.3104 -6.4709 -1.1517 40 1 2.8910 -4.4015 0.2399 41 1 4.2871 -4.2466 -0.8542 42 1 1.2814 -2.6098 0.7393 43 1 2.9295 -2.5591 1.4437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595513021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:08 Heat of formation + Delta-G solvation = -96.264574 kcal Electronic energy + Delta-G solvation = -23218.740401 eV Core-core repulsion = 19876.898846 eV Total energy + Delta-G solvation = -3341.841555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26614 -40.05455 -38.14531 -35.22942 -34.62300 -34.08256 -32.22835 -31.29471 -28.64245 -28.26686 -27.17966 -26.63065 -24.26294 -22.87680 -21.70574 -20.93007 -20.51021 -18.64146 -17.89594 -17.28247 -16.96168 -16.29120 -16.17390 -15.90806 -15.78207 -15.60913 -15.30064 -14.92480 -14.44170 -14.24410 -14.12194 -13.77028 -13.41291 -13.30152 -13.21658 -12.97023 -12.83290 -12.74777 -12.68632 -12.55138 -12.30951 -12.19063 -12.01102 -11.86369 -11.71852 -11.61725 -11.44113 -10.93839 -10.61617 -9.80511 -9.54061 -9.04270 -8.30248 -6.84421 1.39945 1.41412 1.56447 2.22937 2.44845 2.54578 2.87820 3.05195 3.50870 3.58251 3.76378 3.91609 3.96803 4.09556 4.15140 4.19803 4.26068 4.35109 4.39962 4.45968 4.63506 4.70841 4.72412 4.76971 4.77796 4.80074 4.89792 4.93109 4.94765 4.99112 5.04073 5.05017 5.18178 5.29058 5.38196 5.40335 5.71976 5.91554 5.94779 6.12703 6.13432 6.40245 6.87357 7.41213 8.45206 8.66330 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.003691 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.265122 B = 7583.891072 C = 8036.971868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.094 3.906 3 C -0.142 4.142 4 C -0.136 4.136 5 C 0.049 3.951 6 H 0.048 0.952 7 N -0.520 5.520 8 C 0.059 3.941 9 C 0.124 3.876 10 N -0.648 5.648 11 C 0.541 3.459 12 O -0.634 6.634 13 C -0.569 4.569 14 H 0.095 0.905 15 C 0.028 3.972 16 N -0.825 5.825 17 Si 0.996 3.004 18 H -0.260 1.260 19 H -0.276 1.276 20 H -0.247 1.247 21 C 0.124 3.876 22 C 0.048 3.952 23 C 0.060 3.940 24 O -0.386 6.386 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.017 0.983 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.274 0.726 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.023 0.977 42 H 0.073 0.927 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.546 15.188 13.194 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 C -0.199 4.199 4 C -0.173 4.173 5 C -0.059 4.059 6 H 0.066 0.934 7 N -0.246 5.246 8 C -0.069 4.069 9 C 0.000 4.000 10 N -0.385 5.385 11 C 0.347 3.653 12 O -0.522 6.522 13 C -0.605 4.605 14 H 0.113 0.887 15 C -0.187 4.187 16 N -0.455 5.455 17 Si 0.815 3.185 18 H -0.184 1.184 19 H -0.201 1.201 20 H -0.170 1.170 21 C 0.001 3.999 22 C -0.081 4.081 23 C -0.017 4.017 24 O -0.305 6.305 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.035 0.965 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.041 0.959 42 H 0.091 0.909 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.897 15.218 12.586 20.918 hybrid contribution 1.260 -0.747 -0.398 1.518 sum -5.637 14.471 12.189 19.742 Atomic orbital electron populations 1.22219 0.93921 1.02451 1.03019 1.22250 0.94467 0.93504 0.84333 1.21918 1.01376 0.93309 1.03274 1.23083 1.00860 0.95396 0.98006 1.23194 0.98113 0.90128 0.94500 0.93449 1.62045 1.58283 1.02749 1.01548 1.22346 0.97111 0.98423 0.89064 1.21299 0.98317 0.84555 0.95841 1.48139 1.58910 1.20845 1.10557 1.18689 0.77566 0.82867 0.86157 1.90536 1.65191 1.79103 1.17346 1.21477 1.40940 1.03199 0.94889 0.88741 1.27007 0.93817 1.02494 0.95347 1.70186 1.34893 1.31333 1.09046 0.85042 0.78143 0.76358 0.78921 1.18414 1.20074 1.17036 1.21674 1.00386 0.97610 0.80247 1.22514 0.96215 0.90093 0.99263 1.23530 1.00703 0.83914 0.93538 1.88883 1.86308 1.21105 1.34205 0.91900 0.90242 0.92746 0.92467 0.89638 0.91790 0.89804 0.89192 0.96516 0.87831 0.92712 0.92089 0.91630 0.91843 0.89372 0.87323 0.95875 0.90874 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.61 71.98 0.62 -1.88 16 2 C 0.09 1.68 1.19 -10.42 -0.01 1.67 16 3 C -0.14 -2.09 8.68 71.98 0.62 -1.46 16 4 C -0.14 -2.54 4.75 31.58 0.15 -2.39 16 5 C 0.05 1.10 2.81 46.21 0.13 1.23 16 6 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 7 N -0.52 -13.98 4.47 -862.41 -3.86 -17.84 16 8 C 0.06 1.83 5.46 86.39 0.47 2.30 16 9 C 0.12 4.94 6.58 86.35 0.57 5.50 16 10 N -0.65 -29.94 3.01 -823.01 -2.48 -32.42 16 11 C 0.54 31.83 7.61 86.36 0.66 32.49 16 12 O -0.63 -43.21 14.55 -4.34 -0.06 -43.27 16 13 C -0.57 -32.02 8.85 24.83 0.22 -31.80 16 14 H 0.09 4.71 5.73 -2.91 -0.02 4.69 16 15 C 0.03 1.57 5.50 85.30 0.47 2.04 16 16 N -0.82 -50.83 11.86 21.84 0.26 -50.57 16 17 Si 1.00 40.64 29.56 68.60 2.03 42.67 16 18 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 20 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 21 C 0.12 4.47 6.52 86.35 0.56 5.04 16 22 C 0.05 1.37 5.48 86.38 0.47 1.84 16 23 C 0.06 1.23 6.06 72.66 0.44 1.67 16 24 O -0.39 -8.61 10.86 -148.98 -1.62 -10.22 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.43 7.70 -2.38 -0.02 1.41 16 32 H 0.09 1.71 7.29 -2.39 -0.02 1.69 16 33 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 2.59 6.79 -2.39 -0.02 2.57 16 35 H 0.05 2.51 7.09 -2.39 -0.02 2.49 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.09 3.30 5.38 -2.39 -0.01 3.28 16 40 H 0.11 2.41 6.79 -2.39 -0.02 2.39 16 41 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.07 1.50 8.13 -2.38 -0.02 1.48 16 43 H 0.10 1.82 7.86 -2.39 -0.02 1.80 16 Total: -1.00 -75.58 334.31 0.63 -74.95 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.99 Total: 20.46 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 5.37 Total: 16.24 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -6.07 Total: -100.83 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -1.68 Total: -53.50 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -75.58 0.63 -74.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595513021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.312 kcal (2) G-P(sol) polarization free energy of solvation -75.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds