Wall clock time and date at job start Tue Mar 31 2020 02:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46828 * 2 1 4 4 C 1.53002 * 109.47152 * 119.99743 * 2 1 3 5 5 C 1.52990 * 109.47179 * 65.00304 * 4 2 1 6 6 N 1.46495 * 109.47279 * 182.73146 * 5 4 2 7 7 C 1.46501 * 120.00201 * 265.51914 * 6 5 4 8 8 C 1.50695 * 109.47520 * 264.37584 * 7 6 5 9 9 H 1.07997 * 120.00122 * 5.29628 * 8 7 6 10 10 C 1.37878 * 119.99946 * 185.28668 * 8 7 6 11 11 N 1.31513 * 120.00249 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99922 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47236 * 60.00561 * 12 10 8 14 14 H 1.48506 * 109.47277 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47726 * 300.00497 * 12 10 8 16 16 C 1.34784 * 120.00008 * 85.52500 * 6 5 4 17 17 O 1.21276 * 119.99641 * 4.81568 * 16 6 5 18 18 C 1.50695 * 119.99999 * 184.54507 * 16 6 5 19 19 H 1.09007 * 110.43860 * 25.20559 * 18 16 6 20 20 C 1.54630 * 110.48531 * 147.88777 * 18 16 6 21 21 C 1.54482 * 101.76404 * 143.47761 * 20 18 16 22 22 N 1.46767 * 105.47102 * 334.58309 * 21 20 18 23 23 C 1.34415 * 111.30127 * 17.02212 * 22 21 20 24 24 O 1.21284 * 124.94323 * 179.62914 * 23 22 21 25 25 H 1.08992 * 109.47741 * 299.99846 * 1 2 3 26 26 H 1.09008 * 109.47294 * 60.00549 * 1 2 3 27 27 H 1.09009 * 109.46857 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47575 * 240.00346 * 2 1 3 29 29 H 1.09001 * 109.46895 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46756 * 299.99751 * 3 2 1 31 31 H 1.09000 * 109.47218 * 60.00113 * 3 2 1 32 32 H 1.09002 * 109.47075 * 304.99988 * 4 2 1 33 33 H 1.08996 * 109.47062 * 185.00569 * 4 2 1 34 34 H 1.09007 * 109.47599 * 62.73071 * 5 4 2 35 35 H 1.09000 * 109.47268 * 302.73541 * 5 4 2 36 36 H 1.09004 * 109.46891 * 24.38018 * 7 6 5 37 37 H 1.09006 * 109.46783 * 144.37051 * 7 6 5 38 38 H 0.97001 * 120.00410 * 180.02562 * 11 10 8 39 39 H 1.09002 * 110.96875 * 261.59057 * 20 18 16 40 40 H 1.08994 * 110.97171 * 25.35874 * 20 18 16 41 41 H 1.08993 * 110.24518 * 215.58724 * 21 20 18 42 42 H 1.08992 * 110.24816 * 93.58401 * 21 20 18 43 43 H 0.97006 * 124.34594 * 196.99386 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1953 1.1881 6 7 2.0667 -2.8715 2.4140 7 6 3.3508 -3.5759 2.4490 8 6 3.1292 -5.0390 2.1643 9 1 2.1460 -5.3933 1.8920 10 6 4.1817 -5.9253 2.2512 11 7 5.3790 -5.4940 2.5831 12 14 3.9069 -7.7391 1.8990 13 1 3.4130 -7.9040 0.5082 14 1 5.1870 -8.4743 2.0606 15 1 2.9021 -8.2811 2.8485 16 6 1.2821 -2.8457 3.5096 17 8 0.1818 -2.3387 3.4556 18 6 1.7698 -3.4522 4.8000 19 1 2.8594 -3.4582 4.8300 20 6 1.1965 -2.6807 6.0113 21 6 0.9545 -3.8209 7.0251 22 7 0.7737 -5.0322 6.2162 23 6 1.2281 -4.8552 4.9637 24 8 1.2063 -5.6975 4.0913 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6053 -0.2616 2.1370 33 1 3.1262 -0.6442 1.2952 34 1 2.1092 -2.6669 0.3271 35 1 0.5521 -2.2712 1.0932 36 1 4.0163 -3.1557 1.6949 37 1 3.8010 -3.4616 3.4352 38 1 6.1196 -6.1175 2.6439 39 1 1.9221 -1.9641 6.3962 40 1 0.2613 -2.1852 5.7510 41 1 0.0572 -3.6210 7.6105 42 1 1.8174 -3.9313 7.6818 43 1 0.3775 -5.8549 6.5437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597144560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:22 Heat of formation + Delta-G solvation = -84.293296 kcal Electronic energy + Delta-G solvation = -23610.898644 eV Core-core repulsion = 20269.576203 eV Total energy + Delta-G solvation = -3341.322441 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30899 -38.41797 -36.50138 -35.72602 -34.67768 -32.39231 -31.22166 -29.21604 -27.45215 -27.01399 -26.67091 -23.45674 -22.91994 -21.56948 -20.60477 -19.72519 -18.03869 -16.87581 -16.82449 -16.43635 -15.48961 -15.33566 -14.90482 -14.50555 -14.24909 -13.85692 -13.56568 -13.40812 -13.18588 -12.95492 -12.61228 -12.32582 -12.25820 -12.07869 -12.00595 -11.75055 -11.51774 -11.40054 -10.97239 -10.89901 -10.79237 -10.69088 -10.45556 -10.42845 -10.19180 -9.87679 -9.61069 -9.15634 -9.00634 -8.70493 -8.35596 -7.65735 -5.99968 -4.00886 3.08625 3.32928 3.41934 3.43063 3.54902 3.75315 4.02308 4.55470 4.70455 4.92528 5.02316 5.10221 5.14898 5.19176 5.34511 5.36933 5.48424 5.61192 5.72901 5.75208 5.82170 5.84744 5.90828 5.99061 6.02398 6.03202 6.12384 6.28348 6.30397 6.35250 6.40344 6.63589 6.69626 6.81239 7.20619 7.22025 7.40650 7.59995 8.00438 8.21664 8.33542 8.82041 8.94621 9.12261 9.65490 11.07708 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.007068 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.897513 B = 3960.765210 C = 5577.644157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.118 3.882 6 N -0.587 5.587 7 C 0.236 3.764 8 C -0.508 4.508 9 H 0.069 0.931 10 C 0.063 3.937 11 N -0.905 5.905 12 Si 0.895 3.105 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.272 1.272 16 C 0.540 3.460 17 O -0.571 6.571 18 C -0.144 4.144 19 H 0.133 0.867 20 C -0.123 4.123 21 C 0.107 3.893 22 N -0.743 5.743 23 C 0.534 3.466 24 O -0.479 6.479 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.261 0.739 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 9.694 4.775 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.005 4.005 6 N -0.315 5.315 7 C 0.116 3.884 8 C -0.546 4.546 9 H 0.087 0.913 10 C -0.137 4.137 11 N -0.545 5.545 12 Si 0.724 3.276 13 H -0.205 1.205 14 H -0.217 1.217 15 H -0.198 1.198 16 C 0.327 3.673 17 O -0.452 6.452 18 C -0.169 4.169 19 H 0.151 0.849 20 C -0.161 4.161 21 C -0.018 4.018 22 N -0.402 5.402 23 C 0.317 3.683 24 O -0.349 6.349 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.152 9.521 4.194 12.086 hybrid contribution 0.074 -1.486 0.123 1.493 sum -6.078 8.035 4.317 10.961 Atomic orbital electron populations 1.21874 0.95324 1.02129 1.01089 1.21048 0.95883 0.95875 0.98502 1.21820 1.00862 0.96207 1.01270 1.21999 1.00952 0.95913 0.97688 1.21391 1.00500 0.91130 0.87493 1.48193 1.22169 1.50860 1.10280 1.19530 0.78649 0.91992 0.98214 1.21474 0.95918 0.91431 1.45796 0.91329 1.24827 0.94884 0.98851 0.95187 1.69922 1.00215 1.35132 1.49274 0.86576 0.76982 0.85109 0.78979 1.20471 1.21748 1.19762 1.19532 0.84322 0.78675 0.84803 1.90572 1.20713 1.48742 1.85212 1.22048 1.04585 0.95331 0.94902 0.84915 1.22634 1.03225 0.97030 0.93231 1.21956 1.01393 0.84620 0.93794 1.46138 1.65187 1.16044 1.12849 1.20095 0.77305 0.88797 0.82072 1.90881 1.53160 1.47617 1.43292 0.92766 0.93340 0.92217 0.91200 0.92793 0.93081 0.92912 0.91948 0.91869 0.90506 0.90894 0.94748 0.94677 0.92940 0.89414 0.88640 0.90693 0.91434 0.75551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.95 37.16 0.33 -1.54 16 2 C -0.09 -1.22 2.92 -90.62 -0.26 -1.49 16 3 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 4 C -0.13 -1.99 4.98 -26.74 -0.13 -2.12 16 5 C 0.12 2.22 5.19 -4.05 -0.02 2.20 16 6 N -0.59 -12.67 2.48 -175.07 -0.43 -13.11 16 7 C 0.24 5.72 4.94 -5.20 -0.03 5.69 16 8 C -0.51 -13.98 7.60 -34.44 -0.26 -14.24 16 9 H 0.07 2.03 7.08 -52.49 -0.37 1.66 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.91 -25.91 13.29 55.43 0.74 -25.18 16 12 Si 0.90 22.75 29.54 -169.99 -5.02 17.73 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.27 -7.14 7.11 56.52 0.40 -6.74 16 16 C 0.54 11.52 6.58 -10.98 -0.07 11.44 16 17 O -0.57 -12.82 15.46 5.56 0.09 -12.74 16 18 C -0.14 -2.72 2.76 -91.79 -0.25 -2.97 16 19 H 0.13 2.58 5.88 -51.93 -0.31 2.28 16 20 C -0.12 -1.68 6.65 -25.10 -0.17 -1.85 16 21 C 0.11 1.24 7.78 -3.12 -0.02 1.21 16 22 N -0.74 -11.30 6.24 -59.20 -0.37 -11.67 16 23 C 0.53 10.96 7.85 -10.86 -0.09 10.87 16 24 O -0.48 -12.15 15.28 5.55 0.08 -12.06 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.06 0.82 6.51 -51.92 -0.34 0.48 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.44 8.04 -51.92 -0.42 1.02 16 35 H 0.07 1.41 5.79 -51.93 -0.30 1.11 16 36 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 37 H 0.04 0.88 5.92 -51.93 -0.31 0.57 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 1.40 7.02 -51.93 -0.36 1.04 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.41 5.32 8.96 -40.82 -0.37 4.96 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -33.05 345.57 -7.41 -40.46 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.97 Total: 3.72 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.73 Total: 7.63 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.07 Total: -49.95 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.17 Total: -24.80 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.05 -7.41 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.831 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds