Wall clock time and date at job start Tue Mar 31 2020 02:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46828 * 2 1 4 4 C 1.53002 * 109.47152 * 119.99743 * 2 1 3 5 5 C 1.52990 * 109.47179 * 65.00304 * 4 2 1 6 6 N 1.46495 * 109.47279 * 182.73146 * 5 4 2 7 7 C 1.46501 * 120.00201 * 265.51914 * 6 5 4 8 8 C 1.50695 * 109.47520 * 264.37584 * 7 6 5 9 9 H 1.07997 * 120.00122 * 5.29628 * 8 7 6 10 10 C 1.37878 * 119.99946 * 185.28668 * 8 7 6 11 11 N 1.31513 * 120.00249 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99922 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47236 * 60.00561 * 12 10 8 14 14 H 1.48506 * 109.47277 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47726 * 300.00497 * 12 10 8 16 16 C 1.34784 * 120.00008 * 85.52500 * 6 5 4 17 17 O 1.21276 * 119.99641 * 4.81568 * 16 6 5 18 18 C 1.50695 * 119.99999 * 184.54507 * 16 6 5 19 19 H 1.09007 * 110.43860 * 25.20559 * 18 16 6 20 20 C 1.54630 * 110.48531 * 147.88777 * 18 16 6 21 21 C 1.54482 * 101.76404 * 143.47761 * 20 18 16 22 22 N 1.46767 * 105.47102 * 334.58309 * 21 20 18 23 23 C 1.34415 * 111.30127 * 17.02212 * 22 21 20 24 24 O 1.21284 * 124.94323 * 179.62914 * 23 22 21 25 25 H 1.08992 * 109.47741 * 299.99846 * 1 2 3 26 26 H 1.09008 * 109.47294 * 60.00549 * 1 2 3 27 27 H 1.09009 * 109.46857 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47575 * 240.00346 * 2 1 3 29 29 H 1.09001 * 109.46895 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46756 * 299.99751 * 3 2 1 31 31 H 1.09000 * 109.47218 * 60.00113 * 3 2 1 32 32 H 1.09002 * 109.47075 * 304.99988 * 4 2 1 33 33 H 1.08996 * 109.47062 * 185.00569 * 4 2 1 34 34 H 1.09007 * 109.47599 * 62.73071 * 5 4 2 35 35 H 1.09000 * 109.47268 * 302.73541 * 5 4 2 36 36 H 1.09004 * 109.46891 * 24.38018 * 7 6 5 37 37 H 1.09006 * 109.46783 * 144.37051 * 7 6 5 38 38 H 0.97001 * 120.00410 * 180.02562 * 11 10 8 39 39 H 1.09002 * 110.96875 * 261.59057 * 20 18 16 40 40 H 1.08994 * 110.97171 * 25.35874 * 20 18 16 41 41 H 1.08993 * 110.24518 * 215.58724 * 21 20 18 42 42 H 1.08992 * 110.24816 * 93.58401 * 21 20 18 43 43 H 0.97006 * 124.34594 * 196.99386 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1953 1.1881 6 7 2.0667 -2.8715 2.4140 7 6 3.3508 -3.5759 2.4490 8 6 3.1292 -5.0390 2.1643 9 1 2.1460 -5.3933 1.8920 10 6 4.1817 -5.9253 2.2512 11 7 5.3790 -5.4940 2.5831 12 14 3.9069 -7.7391 1.8990 13 1 3.4130 -7.9040 0.5082 14 1 5.1870 -8.4743 2.0606 15 1 2.9021 -8.2811 2.8485 16 6 1.2821 -2.8457 3.5096 17 8 0.1818 -2.3387 3.4556 18 6 1.7698 -3.4522 4.8000 19 1 2.8594 -3.4582 4.8300 20 6 1.1965 -2.6807 6.0113 21 6 0.9545 -3.8209 7.0251 22 7 0.7737 -5.0322 6.2162 23 6 1.2281 -4.8552 4.9637 24 8 1.2063 -5.6975 4.0913 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6053 -0.2616 2.1370 33 1 3.1262 -0.6442 1.2952 34 1 2.1092 -2.6669 0.3271 35 1 0.5521 -2.2712 1.0932 36 1 4.0163 -3.1557 1.6949 37 1 3.8010 -3.4616 3.4352 38 1 6.1196 -6.1175 2.6439 39 1 1.9221 -1.9641 6.3962 40 1 0.2613 -2.1852 5.7510 41 1 0.0572 -3.6210 7.6105 42 1 1.8174 -3.9313 7.6818 43 1 0.3775 -5.8549 6.5437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597144560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:22 Heat of formation + Delta-G solvation = -106.867951 kcal Electronic energy + Delta-G solvation = -23611.877555 eV Core-core repulsion = 20269.576203 eV Total energy + Delta-G solvation = -3342.301352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82646 -39.99296 -37.85668 -37.17819 -36.38250 -34.43076 -32.59816 -30.64947 -29.02870 -28.30862 -27.99339 -24.94434 -24.82319 -22.75577 -22.07546 -20.86562 -19.70496 -18.58458 -18.41359 -18.20297 -17.06442 -16.92029 -16.33816 -16.07103 -15.90240 -15.30791 -14.76290 -14.66635 -14.58245 -14.53404 -14.11114 -14.05336 -13.67264 -13.60278 -13.32625 -13.09057 -12.88205 -12.77130 -12.69399 -12.62387 -12.21519 -12.10483 -11.93294 -11.84086 -11.56392 -11.51711 -11.39987 -10.84755 -10.71451 -10.49275 -9.97433 -9.44861 -8.15930 -6.21171 1.34096 1.37932 1.44413 1.50695 1.74295 2.29349 2.44811 2.62757 3.16016 3.43557 3.59120 3.76755 3.97350 3.98814 4.08527 4.17442 4.20160 4.35686 4.55250 4.55938 4.68844 4.77308 4.78025 4.83473 4.90974 4.96052 4.99561 5.03763 5.13499 5.15924 5.18234 5.24142 5.33999 5.48574 5.51730 5.72464 5.87667 5.93477 6.08505 6.13368 6.53339 6.89151 7.26527 7.38238 7.47631 8.90020 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.007068 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.897513 B = 3960.765210 C = 5577.644157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.114 4.114 5 C 0.114 3.886 6 N -0.593 5.593 7 C 0.253 3.747 8 C -0.507 4.507 9 H 0.042 0.958 10 C 0.026 3.974 11 N -0.924 5.924 12 Si 0.940 3.060 13 H -0.275 1.275 14 H -0.277 1.277 15 H -0.288 1.288 16 C 0.533 3.467 17 O -0.586 6.586 18 C -0.149 4.149 19 H 0.124 0.876 20 C -0.114 4.114 21 C 0.107 3.893 22 N -0.727 5.727 23 C 0.519 3.481 24 O -0.543 6.543 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.032 0.968 38 H 0.264 0.736 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 10.910 5.977 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.197 4.197 4 C -0.152 4.152 5 C -0.008 4.008 6 N -0.322 5.322 7 C 0.132 3.868 8 C -0.546 4.546 9 H 0.061 0.939 10 C -0.173 4.173 11 N -0.565 5.565 12 Si 0.768 3.232 13 H -0.201 1.201 14 H -0.202 1.202 15 H -0.214 1.214 16 C 0.321 3.679 17 O -0.468 6.468 18 C -0.174 4.174 19 H 0.141 0.859 20 C -0.152 4.152 21 C -0.016 4.016 22 N -0.385 5.385 23 C 0.303 3.697 24 O -0.419 6.419 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.138 0.862 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.115 0.885 43 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -6.305 10.763 5.445 13.610 hybrid contribution 0.043 -1.842 -0.206 1.854 sum -6.262 8.921 5.238 12.093 Atomic orbital electron populations 1.21846 0.95076 1.01268 1.01952 1.21058 0.96069 0.96975 0.97007 1.21778 1.01029 0.94654 1.02235 1.21876 1.00759 0.93689 0.98887 1.21542 0.99880 0.93015 0.86401 1.48226 1.21510 1.50994 1.11458 1.19150 0.79650 0.90497 0.97487 1.21490 0.94581 0.93171 1.45316 0.93941 1.25338 0.94910 1.01613 0.95421 1.69965 1.00518 1.36000 1.50009 0.85880 0.76908 0.81987 0.78453 1.20075 1.20182 1.21419 1.20010 0.84045 0.78297 0.85547 1.90548 1.21151 1.49470 1.85681 1.22109 1.04099 0.95449 0.95717 0.85890 1.22727 1.03288 0.97883 0.91264 1.22324 1.04548 0.81746 0.93016 1.46138 1.63041 1.17780 1.11502 1.20514 0.77249 0.88859 0.83067 1.90837 1.56095 1.49363 1.45618 0.93198 0.91157 0.93930 0.90844 0.92529 0.91302 0.92777 0.92799 0.91994 0.91039 0.91735 0.95503 0.95052 0.92684 0.86187 0.89502 0.86906 0.88541 0.74300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.95 71.98 0.64 -2.89 16 2 C -0.09 -2.30 2.92 -10.79 -0.03 -2.33 16 3 C -0.14 -2.83 9.19 71.98 0.66 -2.17 16 4 C -0.11 -3.55 4.98 30.59 0.15 -3.40 16 5 C 0.11 4.41 5.19 86.38 0.45 4.86 16 6 N -0.59 -26.35 2.48 -826.17 -2.05 -28.40 16 7 C 0.25 12.59 4.94 85.63 0.42 13.01 16 8 C -0.51 -28.71 7.60 25.60 0.19 -28.52 16 9 H 0.04 2.61 7.08 -2.91 -0.02 2.59 16 10 C 0.03 1.48 5.46 84.66 0.46 1.94 16 11 N -0.92 -53.12 13.29 21.45 0.28 -52.83 16 12 Si 0.94 47.32 29.54 68.60 2.03 49.35 16 13 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 14 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 15 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 16 C 0.53 23.10 6.58 87.65 0.58 23.68 16 17 O -0.59 -26.60 15.46 -3.02 -0.05 -26.65 16 18 C -0.15 -5.59 2.76 -11.55 -0.03 -5.62 16 19 H 0.12 4.81 5.88 -2.38 -0.01 4.79 16 20 C -0.11 -2.82 6.65 31.65 0.21 -2.61 16 21 C 0.11 2.06 7.78 86.83 0.68 2.73 16 22 N -0.73 -20.84 6.24 -459.82 -2.87 -23.71 16 23 C 0.52 21.41 7.85 87.90 0.69 22.10 16 24 O -0.54 -28.51 15.28 -3.04 -0.05 -28.56 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.04 1.17 6.51 -2.38 -0.02 1.16 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.78 8.04 -2.38 -0.02 2.76 16 35 H 0.06 2.59 5.79 -2.39 -0.01 2.57 16 36 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 37 H 0.03 1.60 5.92 -2.38 -0.01 1.58 16 38 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.09 2.36 7.02 -2.39 -0.02 2.34 16 41 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.42 10.21 8.96 -92.70 -0.83 9.38 16 Total: -1.00 -73.65 345.57 2.55 -71.10 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.17 Total: 18.93 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 5.08 Total: 20.78 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -4.63 Total: -104.94 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -0.09 Total: -55.20 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -73.65 2.55 -71.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.772 kcal (2) G-P(sol) polarization free energy of solvation -73.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds