Wall clock time and date at job start Tue Mar 31 2020 02:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47255 * 2 1 4 4 C 1.53001 * 109.47415 * 239.99551 * 2 1 3 5 5 C 1.53007 * 109.46915 * 119.99726 * 2 1 3 6 6 N 1.46496 * 109.46970 * 47.14576 * 5 2 1 7 7 C 1.46507 * 120.00264 * 81.47766 * 6 5 2 8 8 C 1.50692 * 109.46853 * 261.18066 * 7 6 5 9 9 H 1.08004 * 120.00665 * 4.60128 * 8 7 6 10 10 C 1.37884 * 119.99986 * 184.59981 * 8 7 6 11 11 N 1.31513 * 119.99748 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99880 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46664 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47305 * 299.99916 * 12 10 8 15 15 H 1.48497 * 109.47432 * 60.00160 * 12 10 8 16 16 C 1.34773 * 119.99816 * 261.47635 * 6 5 2 17 17 O 1.21283 * 120.00135 * 184.40666 * 16 6 5 18 18 C 1.50702 * 120.00088 * 4.40135 * 16 6 5 19 19 H 1.08994 * 110.43384 * 40.48151 * 18 16 6 20 20 C 1.54624 * 110.48505 * 163.16503 * 18 16 6 21 21 C 1.54484 * 101.76652 * 143.47484 * 20 18 16 22 22 N 1.46762 * 105.47254 * 334.58779 * 21 20 18 23 23 C 1.34423 * 111.29820 * 17.00920 * 22 21 20 24 24 O 1.21285 * 124.93449 * 179.63262 * 23 22 21 25 25 H 1.08997 * 109.47091 * 307.26699 * 1 2 3 26 26 H 1.09006 * 109.46871 * 67.26527 * 1 2 3 27 27 H 1.09001 * 109.47173 * 187.26715 * 1 2 3 28 28 H 1.08997 * 109.47067 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47000 * 299.99962 * 3 2 1 30 30 H 1.09002 * 109.47354 * 59.99905 * 3 2 1 31 31 H 1.08999 * 109.46900 * 314.89952 * 4 2 1 32 32 H 1.09009 * 109.46557 * 74.89997 * 4 2 1 33 33 H 1.09000 * 109.47221 * 194.89799 * 4 2 1 34 34 H 1.09001 * 109.47321 * 287.14095 * 5 2 1 35 35 H 1.08999 * 109.46828 * 167.14306 * 5 2 1 36 36 H 1.08995 * 109.46852 * 141.17927 * 7 6 5 37 37 H 1.09002 * 109.46359 * 21.17612 * 7 6 5 38 38 H 0.96998 * 120.00142 * 179.97438 * 11 10 8 39 39 H 1.09000 * 110.97200 * 261.59676 * 20 18 16 40 40 H 1.08998 * 110.97409 * 25.35897 * 20 18 16 41 41 H 1.08997 * 110.24678 * 215.58140 * 21 20 18 42 42 H 1.09003 * 110.23938 * 93.58297 * 21 20 18 43 43 H 0.97003 * 124.34951 * 197.03900 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.3170 -1.9848 1.4130 7 6 1.7234 -3.1659 0.6472 8 6 0.8268 -3.3184 -0.5543 9 1 0.0820 -2.5670 -0.7713 10 6 0.9573 -4.4173 -1.3768 11 7 1.8646 -5.3321 -1.1129 12 14 -0.1545 -4.6067 -2.8658 13 1 0.1846 -5.8638 -3.5800 14 1 -1.5711 -4.6564 -2.4228 15 1 0.0385 -3.4510 -3.7781 16 6 0.2780 -2.0609 2.2680 17 8 -0.2698 -3.1251 2.4636 18 6 -0.2032 -0.8235 2.9811 19 1 -0.1956 0.0320 2.3059 20 6 -1.6198 -1.0482 3.5587 21 6 -1.5459 -0.2647 4.8881 22 7 -0.1238 -0.2415 5.2503 23 6 0.6534 -0.5462 4.1968 24 8 1.8652 -0.5928 4.2181 25 1 -0.3633 0.6223 0.8178 26 1 -0.3633 0.3972 -0.9479 27 1 -0.3633 -1.0194 0.1300 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.4772 -1.6439 -1.3912 32 1 1.9087 -0.0779 -2.1193 33 1 3.0974 -0.9559 -1.1270 34 1 1.8755 -0.0925 2.1244 35 1 3.1056 -0.9236 1.1424 36 1 1.6421 -4.0523 1.2762 37 1 2.7557 -3.0475 0.3177 38 1 1.9562 -6.1054 -1.6913 39 1 -2.3805 -0.6286 2.9004 40 1 -1.8039 -2.1071 3.7398 41 1 -2.1233 -0.7748 5.6591 42 1 -1.9161 0.7509 4.7484 43 1 0.2120 -0.0334 6.1363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597160959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:24 Heat of formation + Delta-G solvation = -93.281481 kcal Electronic energy + Delta-G solvation = -24497.402354 eV Core-core repulsion = 21155.690156 eV Total energy + Delta-G solvation = -3341.712198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12578 -40.15948 -38.47990 -37.36167 -35.48843 -34.40018 -32.62617 -30.11629 -28.81623 -27.99795 -27.74323 -26.70771 -25.15036 -22.85485 -22.27125 -20.47160 -19.17106 -18.80960 -18.37408 -18.29229 -17.29033 -17.05355 -16.17172 -16.03306 -15.54170 -15.08001 -14.93674 -14.79485 -14.66958 -14.27949 -14.20292 -13.97317 -13.68220 -13.54537 -13.20207 -13.00266 -12.77863 -12.72413 -12.51578 -12.38115 -12.31799 -12.12923 -11.99363 -11.96422 -11.55260 -11.45353 -11.02856 -10.91190 -10.66443 -10.54735 -10.07660 -9.33785 -8.15125 -6.22464 1.30296 1.39004 1.42697 1.48966 1.73850 2.26969 2.43984 2.55743 3.13592 3.35007 3.39733 3.74786 3.92244 3.98602 4.05477 4.15671 4.25990 4.46937 4.59188 4.67642 4.80118 4.81860 4.93974 4.95315 5.01295 5.01704 5.05613 5.20150 5.20308 5.23956 5.31676 5.33771 5.46203 5.51285 5.75954 5.76380 5.90002 5.94554 5.99316 6.14722 6.71528 6.84767 7.16418 7.31868 7.47391 8.92844 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.006674 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.145389 B = 4194.553046 C = 4813.767960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.130 4.130 4 C -0.170 4.170 5 C 0.118 3.882 6 N -0.586 5.586 7 C 0.266 3.734 8 C -0.508 4.508 9 H 0.075 0.925 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.957 3.043 13 H -0.286 1.286 14 H -0.275 1.275 15 H -0.258 1.258 16 C 0.519 3.481 17 O -0.585 6.585 18 C -0.157 4.157 19 H 0.155 0.845 20 C -0.123 4.123 21 C 0.107 3.893 22 N -0.714 5.714 23 C 0.523 3.477 24 O -0.563 6.563 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.030 0.970 34 H 0.093 0.907 35 H 0.056 0.944 36 H -0.013 1.013 37 H 0.014 0.986 38 H 0.263 0.737 39 H 0.121 0.879 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 17.982 8.172 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.188 4.188 4 C -0.227 4.227 5 C -0.005 4.005 6 N -0.315 5.315 7 C 0.145 3.855 8 C -0.546 4.546 9 H 0.093 0.907 10 C -0.194 4.194 11 N -0.573 5.573 12 Si 0.782 3.218 13 H -0.212 1.212 14 H -0.200 1.200 15 H -0.182 1.182 16 C 0.307 3.693 17 O -0.466 6.466 18 C -0.181 4.181 19 H 0.172 0.828 20 C -0.161 4.161 21 C -0.016 4.016 22 N -0.369 5.369 23 C 0.308 3.692 24 O -0.442 6.442 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.005 0.995 37 H 0.032 0.968 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -7.347 17.213 8.115 20.399 hybrid contribution 0.320 -0.977 -0.535 1.159 sum -7.027 16.236 7.579 19.247 Atomic orbital electron populations 1.22080 0.94482 1.01454 1.02171 1.20891 0.96399 0.96022 0.94651 1.21798 1.01035 0.93285 1.02683 1.22436 1.00709 1.02975 0.96551 1.21903 0.95488 0.84308 0.98758 1.48037 1.30831 1.12444 1.40145 1.18744 0.94610 0.82316 0.89837 1.21539 1.18245 1.06341 1.08517 0.90706 1.25816 0.96976 0.95271 1.01303 1.70075 1.35646 1.11666 1.39905 0.85619 0.79000 0.77909 0.79301 1.21165 1.20048 1.18217 1.20308 0.79913 0.89793 0.79330 1.90629 1.58127 1.32113 1.65761 1.22506 0.99049 0.99049 0.97492 0.82807 1.22743 0.93084 1.02822 0.97431 1.22400 0.80103 1.02660 0.96448 1.46106 1.08840 1.69703 1.12277 1.20508 0.86868 0.75515 0.86286 1.90749 1.14403 1.54041 1.84998 0.90856 0.91775 0.93979 0.92759 0.91271 0.91432 0.89562 0.92887 0.95041 0.88884 0.92553 0.99473 0.96774 0.92802 0.86025 0.90760 0.87460 0.86900 0.73640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 6.99 71.98 0.50 -3.73 16 2 C -0.08 -2.45 0.86 -52.18 -0.05 -2.49 16 3 C -0.13 -3.00 8.38 71.98 0.60 -2.40 16 4 C -0.17 -6.27 7.91 71.98 0.57 -5.71 16 5 C 0.12 4.33 4.23 86.38 0.37 4.69 16 6 N -0.59 -26.44 1.74 -826.15 -1.44 -27.87 16 7 C 0.27 14.76 4.48 85.63 0.38 15.14 16 8 C -0.51 -28.26 6.31 25.60 0.16 -28.10 16 9 H 0.08 3.99 5.00 -2.91 -0.01 3.98 16 10 C 0.00 0.26 5.46 84.66 0.46 0.73 16 11 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 12 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 16 C 0.52 22.50 5.31 87.66 0.47 22.97 16 17 O -0.59 -30.72 15.24 -3.04 -0.05 -30.77 16 18 C -0.16 -4.60 2.17 -11.55 -0.03 -4.63 16 19 H 0.15 3.76 4.12 -2.39 -0.01 3.75 16 20 C -0.12 -2.63 6.60 31.65 0.21 -2.42 16 21 C 0.11 1.34 7.78 86.83 0.68 2.02 16 22 N -0.71 -13.58 6.24 -459.80 -2.87 -16.45 16 23 C 0.52 15.53 7.46 87.90 0.66 16.19 16 24 O -0.56 -21.28 15.97 -3.05 -0.05 -21.33 16 25 H 0.07 1.63 5.90 -2.39 -0.01 1.62 16 26 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.04 1.55 4.16 -2.39 -0.01 1.54 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 3.88 3.49 -2.39 -0.01 3.87 16 32 H 0.05 1.69 8.06 -2.38 -0.02 1.68 16 33 H 0.03 1.19 7.89 -2.39 -0.02 1.17 16 34 H 0.09 3.10 4.38 -2.39 -0.01 3.09 16 35 H 0.06 2.18 7.76 -2.39 -0.02 2.16 16 36 H -0.01 -0.84 7.64 -2.39 -0.02 -0.85 16 37 H 0.01 0.82 7.90 -2.39 -0.02 0.80 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 2.09 6.88 -2.39 -0.02 2.08 16 41 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.42 6.19 8.96 -92.71 -0.83 5.36 16 Total: -1.00 -78.77 324.69 3.10 -75.67 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.21 Total: 18.82 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 4.98 Total: 12.28 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -4.02 Total: -101.32 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -0.09 Total: -52.10 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -78.77 3.10 -75.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597160959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.607 kcal (2) G-P(sol) polarization free energy of solvation -78.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds