Wall clock time and date at job start Tue Mar 31 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 120.00046 * 2 1 4 4 C 1.52996 * 109.47014 * 120.00295 * 3 2 1 5 5 O 1.42900 * 109.46949 * 359.97438 * 3 2 1 6 6 C 1.50699 * 109.46984 * 240.00310 * 3 2 1 7 7 O 1.21287 * 120.00279 * 334.99697 * 6 3 2 8 8 N 1.34778 * 119.99799 * 155.00142 * 6 3 2 9 9 C 1.46502 * 119.99922 * 179.97438 * 8 6 3 10 10 C 1.52995 * 109.47165 * 180.02562 * 9 8 6 11 11 C 1.53042 * 109.45721 * 295.02759 * 10 9 8 12 12 C 1.53198 * 109.31114 * 178.60398 * 11 10 9 13 13 N 1.46922 * 108.76641 * 54.64908 * 12 11 10 14 14 C 1.36940 * 120.62725 * 126.40419 * 13 12 11 15 15 H 1.07999 * 120.00289 * 331.83022 * 14 13 12 16 16 C 1.38814 * 120.00043 * 151.82156 * 14 13 12 17 17 N 1.31618 * 119.99636 * 343.08692 * 16 14 13 18 18 Si 1.86798 * 120.00416 * 163.08008 * 16 14 13 19 19 H 1.48504 * 109.46907 * 60.00080 * 18 16 14 20 20 H 1.48497 * 109.47421 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47179 * 300.00549 * 18 16 14 22 22 C 1.46919 * 118.74238 * 306.38456 * 13 12 11 23 23 C 1.53035 * 109.46214 * 174.97015 * 10 9 8 24 24 H 1.08001 * 120.00161 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00278 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99977 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46978 * 299.99914 * 4 3 2 28 28 H 1.09004 * 109.47406 * 59.99902 * 4 3 2 29 29 H 1.08997 * 109.46914 * 180.02562 * 4 3 2 30 30 H 0.96698 * 114.00319 * 300.00319 * 5 3 2 31 31 H 0.96996 * 120.00043 * 0.02562 * 8 6 3 32 32 H 1.09009 * 109.46815 * 299.99750 * 9 8 6 33 33 H 1.08996 * 109.47054 * 59.99428 * 9 8 6 34 34 H 1.09003 * 109.45979 * 54.99576 * 10 9 8 35 35 H 1.09003 * 109.49506 * 298.55958 * 11 10 9 36 36 H 1.08997 * 109.50044 * 58.66121 * 11 10 9 37 37 H 1.08997 * 109.59738 * 294.86185 * 12 11 10 38 38 H 1.08994 * 109.70098 * 174.50382 * 12 11 10 39 39 H 0.97001 * 119.99850 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.58750 * 293.82413 * 22 13 12 41 41 H 1.09007 * 109.70483 * 173.46379 * 22 13 12 42 42 H 1.09004 * 109.50082 * 301.33534 * 23 10 9 43 43 H 1.09005 * 109.49803 * 61.42982 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9298 1.3849 -1.2305 7 8 3.3001 0.3683 -1.7785 8 7 3.2933 2.5862 -1.7220 9 6 4.1359 2.6638 -2.9179 10 6 4.3999 4.1311 -3.2613 11 6 3.0835 4.8090 -3.6480 12 6 3.3461 6.2862 -3.9575 13 7 4.3945 6.3752 -4.9830 14 6 4.1874 7.0908 -6.1321 15 1 3.1872 7.2086 -6.5221 16 6 5.2631 7.6648 -6.7956 17 7 6.4141 7.8160 -6.1754 18 14 5.0773 8.2226 -8.5686 19 1 4.0116 9.2533 -8.6541 20 1 6.3614 8.7970 -9.0441 21 1 4.7110 7.0603 -9.4174 22 6 5.6693 5.6823 -4.7521 23 6 5.3806 4.2119 -4.4334 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 2.3165 1.3284 2.1392 28 1 3.6515 0.5576 1.2492 29 1 3.4878 2.3303 1.2494 30 1 0.5438 2.4030 -0.7658 31 1 2.9975 3.3992 -1.2834 32 1 5.0834 2.1593 -2.7281 33 1 3.6278 2.1806 -3.7523 34 1 4.8273 4.6357 -2.3948 35 1 2.6681 4.3208 -4.5297 36 1 2.3773 4.7306 -2.8215 37 1 3.6760 6.7963 -3.0525 38 1 2.4328 6.7522 -4.3272 39 1 7.1660 8.2168 -6.6391 40 1 6.1886 6.1431 -3.9119 41 1 6.2901 5.7475 -5.6457 42 1 6.3097 3.7085 -4.1659 43 1 4.9434 3.7293 -5.3076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597294919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:48 Heat of formation + Delta-G solvation = -55.054211 kcal Electronic energy + Delta-G solvation = -22713.763326 eV Core-core repulsion = 19373.708786 eV Total energy + Delta-G solvation = -3340.054539 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.46457 -38.15490 -37.34878 -35.05820 -33.23445 -32.78607 -31.03206 -30.54847 -29.70876 -27.01854 -24.80355 -23.74066 -22.28166 -21.32342 -20.81558 -19.87002 -19.19165 -18.26675 -17.00830 -16.73124 -15.97052 -15.53454 -14.96178 -14.61447 -14.45867 -13.98231 -13.65252 -13.49822 -13.29350 -13.10930 -12.84156 -12.55606 -12.49753 -12.36779 -12.32165 -11.87010 -11.83032 -11.35694 -11.11007 -10.98987 -10.72067 -10.52181 -10.26793 -10.23750 -10.07151 -9.93330 -9.62808 -9.54980 -9.35061 -9.04273 -8.47034 -6.67462 -5.79458 -3.22011 1.84621 2.43769 3.12715 3.38081 3.43948 3.45270 3.72667 4.33747 4.49312 4.56515 4.76009 5.01270 5.08622 5.20547 5.32821 5.36279 5.37333 5.40602 5.58724 5.61177 5.74256 5.83825 5.90314 6.01853 6.11681 6.23457 6.30218 6.30967 6.39321 6.44459 6.58635 6.66892 6.74999 6.80005 6.96620 7.02164 7.35546 7.48127 7.64924 7.78756 8.10158 8.44952 9.21132 9.84607 10.41355 11.29078 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037922 B = 0.003231 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.189591 B = 8664.164484 C = 8824.686428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.167 4.167 3 C 0.147 3.853 4 C -0.132 4.132 5 O -0.546 6.546 6 C 0.489 3.511 7 O -0.537 6.537 8 N -0.714 5.714 9 C 0.121 3.879 10 C -0.090 4.090 11 C -0.127 4.127 12 C 0.145 3.855 13 N -0.592 5.592 14 C -0.254 4.254 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.172 3.828 23 C -0.133 4.133 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.124 0.876 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.383 0.617 31 H 0.406 0.594 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.053 0.947 39 H 0.254 0.746 40 H 0.017 0.983 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 -12.547 13.374 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.186 4.186 3 C 0.103 3.897 4 C -0.189 4.189 5 O -0.353 6.353 6 C 0.273 3.727 7 O -0.414 6.414 8 N -0.366 5.366 9 C -0.002 4.002 10 C -0.109 4.109 11 C -0.166 4.166 12 C 0.019 3.981 13 N -0.315 5.315 14 C -0.383 4.383 15 H 0.082 0.918 16 C -0.196 4.196 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.046 3.954 23 C -0.173 4.173 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.142 0.858 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.232 0.768 31 H 0.242 0.758 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.786 -13.023 13.444 20.272 hybrid contribution -0.419 0.504 -1.266 1.425 sum -8.204 -12.519 12.178 19.296 Atomic orbital electron populations 1.23857 0.95751 1.02610 0.99437 1.23220 0.96345 0.97980 1.01033 1.20393 0.88650 0.86193 0.94493 1.21686 0.98789 1.03547 0.94926 1.86587 1.50430 1.48317 1.49974 1.21215 0.81719 0.83944 0.85841 1.90710 1.55808 1.34829 1.60076 1.46124 1.52064 1.08419 1.29983 1.21633 0.94084 0.98162 0.86326 1.21312 0.97675 0.92466 0.99432 1.22075 0.95381 0.99270 0.99895 1.20885 0.92914 0.92202 0.92113 1.44040 1.12547 1.57089 1.17838 1.19147 0.93652 1.26194 0.99353 0.91792 1.25045 0.97021 0.98441 0.99113 1.70019 1.02654 1.46761 1.35342 0.86371 0.76819 0.78465 0.85116 1.20891 1.21629 1.21026 1.20752 0.88189 0.85837 1.00586 1.22185 0.96959 1.01728 0.96406 0.87730 0.87714 0.85770 0.90478 0.90278 0.90962 0.76807 0.75812 0.91755 0.91594 0.91276 0.92229 0.93404 0.96586 0.92875 0.93576 0.96464 0.89418 0.93078 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 13.93 29.02 0.40 -1.01 16 2 C -0.17 -1.59 8.15 -36.02 -0.29 -1.88 16 3 C 0.15 1.45 1.29 -92.92 -0.12 1.33 16 4 C -0.13 -1.13 8.81 37.16 0.33 -0.81 16 5 O -0.55 -4.82 11.26 -35.23 -0.40 -5.22 16 6 C 0.49 6.24 6.68 -10.99 -0.07 6.16 16 7 O -0.54 -8.79 16.26 5.55 0.09 -8.70 16 8 N -0.71 -8.65 5.18 -60.29 -0.31 -8.96 16 9 C 0.12 1.70 5.06 -4.04 -0.02 1.68 16 10 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 11 C -0.13 -2.05 5.25 -26.61 -0.14 -2.19 16 12 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 13 N -0.59 -14.60 2.99 -172.32 -0.52 -15.12 16 14 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 15 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 16 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 17 N -0.90 -26.08 11.19 55.49 0.62 -25.46 16 18 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 23 C -0.13 -2.44 5.36 -26.61 -0.14 -2.59 16 24 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 25 H 0.10 0.72 6.41 -52.48 -0.34 0.39 16 26 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.38 2.52 8.05 45.56 0.37 2.88 16 31 H 0.41 4.35 7.09 -40.82 -0.29 4.06 16 32 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.64 7.15 -51.93 -0.37 0.27 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 2.31 6.07 -51.93 -0.31 2.00 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 345.39 15.07 5.21 5.21 Total: -1.00 -31.39 345.39 -7.27 -38.66 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.40 Total: 4.10 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.53 Total: -1.08 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.21 Total: -49.54 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.31 Total: -13.92 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.39 -7.27 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597294919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.396 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds