Wall clock time and date at job start Tue Mar 31 2020 02:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 120.00046 * 2 1 4 4 C 1.52996 * 109.47014 * 120.00295 * 3 2 1 5 5 O 1.42900 * 109.46949 * 359.97438 * 3 2 1 6 6 C 1.50699 * 109.46984 * 240.00310 * 3 2 1 7 7 O 1.21287 * 120.00279 * 334.99697 * 6 3 2 8 8 N 1.34778 * 119.99799 * 155.00142 * 6 3 2 9 9 C 1.46502 * 119.99922 * 179.97438 * 8 6 3 10 10 C 1.52995 * 109.47165 * 180.02562 * 9 8 6 11 11 C 1.53042 * 109.45721 * 295.02759 * 10 9 8 12 12 C 1.53198 * 109.31114 * 178.60398 * 11 10 9 13 13 N 1.46922 * 108.76641 * 54.64908 * 12 11 10 14 14 C 1.36940 * 120.62725 * 126.40419 * 13 12 11 15 15 H 1.07999 * 120.00289 * 331.83022 * 14 13 12 16 16 C 1.38814 * 120.00043 * 151.82156 * 14 13 12 17 17 N 1.31618 * 119.99636 * 343.08692 * 16 14 13 18 18 Si 1.86798 * 120.00416 * 163.08008 * 16 14 13 19 19 H 1.48504 * 109.46907 * 60.00080 * 18 16 14 20 20 H 1.48497 * 109.47421 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47179 * 300.00549 * 18 16 14 22 22 C 1.46919 * 118.74238 * 306.38456 * 13 12 11 23 23 C 1.53035 * 109.46214 * 174.97015 * 10 9 8 24 24 H 1.08001 * 120.00161 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00278 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99977 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46978 * 299.99914 * 4 3 2 28 28 H 1.09004 * 109.47406 * 59.99902 * 4 3 2 29 29 H 1.08997 * 109.46914 * 180.02562 * 4 3 2 30 30 H 0.96698 * 114.00319 * 300.00319 * 5 3 2 31 31 H 0.96996 * 120.00043 * 0.02562 * 8 6 3 32 32 H 1.09009 * 109.46815 * 299.99750 * 9 8 6 33 33 H 1.08996 * 109.47054 * 59.99428 * 9 8 6 34 34 H 1.09003 * 109.45979 * 54.99576 * 10 9 8 35 35 H 1.09003 * 109.49506 * 298.55958 * 11 10 9 36 36 H 1.08997 * 109.50044 * 58.66121 * 11 10 9 37 37 H 1.08997 * 109.59738 * 294.86185 * 12 11 10 38 38 H 1.08994 * 109.70098 * 174.50382 * 12 11 10 39 39 H 0.97001 * 119.99850 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.58750 * 293.82413 * 22 13 12 41 41 H 1.09007 * 109.70483 * 173.46379 * 22 13 12 42 42 H 1.09004 * 109.50082 * 301.33534 * 23 10 9 43 43 H 1.09005 * 109.49803 * 61.42982 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9298 1.3849 -1.2305 7 8 3.3001 0.3683 -1.7785 8 7 3.2933 2.5862 -1.7220 9 6 4.1359 2.6638 -2.9179 10 6 4.3999 4.1311 -3.2613 11 6 3.0835 4.8090 -3.6480 12 6 3.3461 6.2862 -3.9575 13 7 4.3945 6.3752 -4.9830 14 6 4.1874 7.0908 -6.1321 15 1 3.1872 7.2086 -6.5221 16 6 5.2631 7.6648 -6.7956 17 7 6.4141 7.8160 -6.1754 18 14 5.0773 8.2226 -8.5686 19 1 4.0116 9.2533 -8.6541 20 1 6.3614 8.7970 -9.0441 21 1 4.7110 7.0603 -9.4174 22 6 5.6693 5.6823 -4.7521 23 6 5.3806 4.2119 -4.4334 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 2.3165 1.3284 2.1392 28 1 3.6515 0.5576 1.2492 29 1 3.4878 2.3303 1.2494 30 1 0.5438 2.4030 -0.7658 31 1 2.9975 3.3992 -1.2834 32 1 5.0834 2.1593 -2.7281 33 1 3.6278 2.1806 -3.7523 34 1 4.8273 4.6357 -2.3948 35 1 2.6681 4.3208 -4.5297 36 1 2.3773 4.7306 -2.8215 37 1 3.6760 6.7963 -3.0525 38 1 2.4328 6.7522 -4.3272 39 1 7.1660 8.2168 -6.6391 40 1 6.1886 6.1431 -3.9119 41 1 6.2901 5.7475 -5.6457 42 1 6.3097 3.7085 -4.1659 43 1 4.9434 3.7293 -5.3076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597294919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:47 Heat of formation + Delta-G solvation = -77.274868 kcal Electronic energy + Delta-G solvation = -22714.726886 eV Core-core repulsion = 19373.708786 eV Total energy + Delta-G solvation = -3341.018099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41135 -39.53598 -38.32767 -36.47066 -34.52530 -33.79856 -32.57625 -31.55848 -31.24447 -28.52016 -26.15418 -24.98331 -23.83280 -22.76563 -21.86693 -20.81911 -20.52297 -19.24467 -18.60793 -17.72417 -17.02384 -16.83176 -16.51692 -15.85427 -15.49884 -15.39968 -15.30221 -14.90263 -14.70950 -14.04165 -14.03335 -13.80110 -13.61316 -13.38959 -13.23694 -13.15940 -13.00297 -12.80206 -12.55310 -12.49080 -12.28519 -12.02573 -11.86183 -11.82427 -11.63583 -11.24519 -11.11790 -10.80522 -10.53248 -10.29972 -10.12570 -8.66766 -7.87265 -5.32390 1.17435 1.46395 1.46702 1.49050 1.55565 2.18189 2.51527 3.06164 3.27175 3.62678 3.70643 3.71102 3.83639 3.93127 4.06242 4.08210 4.38499 4.49991 4.53518 4.67721 4.70791 4.71395 4.75063 4.80255 4.93172 5.01200 5.02196 5.11964 5.13843 5.27766 5.28700 5.35701 5.43583 5.54852 5.60859 5.65773 5.66650 5.78421 6.32674 6.40033 6.61757 7.13787 7.15953 7.88295 8.38999 9.18772 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037922 B = 0.003231 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.189591 B = 8664.164484 C = 8824.686428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.191 4.191 3 C 0.157 3.843 4 C -0.133 4.133 5 O -0.545 6.545 6 C 0.488 3.512 7 O -0.576 6.576 8 N -0.705 5.705 9 C 0.134 3.866 10 C -0.078 4.078 11 C -0.113 4.113 12 C 0.139 3.861 13 N -0.612 5.612 14 C -0.265 4.265 15 H 0.065 0.935 16 C -0.051 4.051 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.279 1.279 22 C 0.178 3.822 23 C -0.122 4.122 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.393 0.607 31 H 0.416 0.584 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.017 0.983 38 H 0.052 0.948 39 H 0.250 0.750 40 H -0.002 1.002 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.333 -13.260 14.422 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.210 4.210 3 C 0.113 3.887 4 C -0.191 4.191 5 O -0.354 6.354 6 C 0.274 3.726 7 O -0.456 6.456 8 N -0.357 5.357 9 C 0.010 3.990 10 C -0.097 4.097 11 C -0.152 4.152 12 C 0.014 3.986 13 N -0.336 5.336 14 C -0.395 4.395 15 H 0.083 0.917 16 C -0.246 4.246 17 N -0.581 5.581 18 Si 0.794 3.206 19 H -0.200 1.200 20 H -0.220 1.220 21 H -0.206 1.206 22 C 0.052 3.948 23 C -0.162 4.162 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.244 0.756 31 H 0.253 0.747 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.016 0.984 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.637 -13.727 14.517 22.182 hybrid contribution 0.082 0.743 -1.553 1.723 sum -9.555 -12.984 12.965 20.687 Atomic orbital electron populations 1.24089 0.95229 1.03826 0.96927 1.23196 0.96970 0.97491 1.03361 1.20263 0.88510 0.86746 0.93201 1.21731 0.98886 1.03639 0.94812 1.86586 1.50315 1.47826 1.50627 1.21806 0.81341 0.83204 0.86217 1.90694 1.57360 1.36116 1.61392 1.46004 1.51535 1.08931 1.29274 1.21313 0.94344 0.96409 0.86910 1.21144 0.96599 0.93693 0.98268 1.21920 0.96361 0.95964 1.00965 1.21073 0.91541 0.95069 0.90890 1.44328 1.13660 1.57210 1.18406 1.19489 0.93737 1.25775 1.00503 0.91709 1.25787 0.96874 0.99232 1.02726 1.70172 1.03237 1.48063 1.36622 0.85372 0.76553 0.78115 0.80601 1.20046 1.22039 1.20555 1.20551 0.87429 0.88716 0.98074 1.21985 0.98751 0.97967 0.97501 0.86530 0.86466 0.86705 0.89272 0.90353 0.90774 0.75594 0.74665 0.91959 0.92434 0.90637 0.93031 0.89666 0.96519 0.92958 0.94127 0.98429 0.93093 0.91316 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 13.93 67.78 0.94 -1.21 16 2 C -0.19 -3.28 8.15 25.65 0.21 -3.07 16 3 C 0.16 2.75 1.29 -12.29 -0.02 2.73 16 4 C -0.13 -2.01 8.81 71.98 0.63 -1.37 16 5 O -0.55 -7.90 11.26 -148.98 -1.68 -9.57 16 6 C 0.49 11.56 6.68 87.66 0.59 12.14 16 7 O -0.58 -18.28 16.26 -3.05 -0.05 -18.33 16 8 N -0.71 -15.31 5.18 -463.05 -2.40 -17.71 16 9 C 0.13 3.49 5.06 86.38 0.44 3.93 16 10 C -0.08 -2.28 2.19 -10.77 -0.02 -2.31 16 11 C -0.11 -3.40 5.25 30.67 0.16 -3.24 16 12 C 0.14 5.50 6.52 86.37 0.56 6.06 16 13 N -0.61 -30.40 2.99 -699.11 -2.09 -32.49 16 14 C -0.26 -14.58 9.58 84.03 0.81 -13.78 16 15 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 16 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 17 N -0.93 -55.45 11.19 21.65 0.24 -55.21 16 18 Si 0.97 44.97 29.59 68.60 2.03 47.00 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 C 0.18 8.48 5.30 86.37 0.46 8.94 16 23 C -0.12 -4.43 5.36 30.67 0.16 -4.27 16 24 H 0.12 1.23 8.06 -2.91 -0.02 1.21 16 25 H 0.12 1.22 6.41 -2.91 -0.02 1.21 16 26 H 0.11 2.16 8.06 -2.91 -0.02 2.14 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.39 3.82 8.05 -74.06 -0.60 3.22 16 31 H 0.42 7.50 7.09 -92.71 -0.66 6.84 16 32 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.95 7.15 -2.39 -0.02 1.93 16 37 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 39 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.05 2.79 6.07 -2.38 -0.01 2.77 16 42 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -68.59 345.39 1.14 -67.45 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -0.26 Total: 16.73 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 5.34 Total: 2.13 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -4.25 Total: -105.40 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -1.73 Total: -27.90 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -68.59 1.14 -67.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597294919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.823 kcal (2) G-P(sol) polarization free energy of solvation -68.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds