Wall clock time and date at job start Tue Mar 31 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47394 * 2 1 4 4 C 1.47206 * 109.46790 * 240.00120 * 2 1 3 5 5 N 2.60805 * 109.46866 * 240.00212 * 2 1 3 6 6 C 1.52996 * 109.47255 * 120.00434 * 2 1 3 7 7 C 1.52997 * 109.47499 * 185.54274 * 6 2 1 8 8 H 1.09004 * 109.47010 * 54.28705 * 7 6 2 9 9 O 1.42904 * 109.47305 * 294.29206 * 7 6 2 10 10 C 1.52998 * 109.47413 * 174.28493 * 7 6 2 11 11 N 1.46900 * 109.46869 * 185.00022 * 10 7 6 12 12 C 1.47842 * 111.00015 * 69.16160 * 11 10 7 13 13 C 1.54914 * 104.79609 * 146.35862 * 12 11 10 14 14 C 1.55401 * 101.74101 * 323.01969 * 13 12 11 15 15 O 1.42894 * 110.67664 * 277.17463 * 14 13 12 16 16 C 1.50703 * 110.84358 * 153.86311 * 14 13 12 17 17 H 1.08005 * 119.99814 * 246.46590 * 16 14 13 18 18 C 1.37874 * 120.00107 * 66.45948 * 16 14 13 19 19 N 1.31519 * 120.00144 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00088 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47132 * 90.00246 * 20 18 16 22 22 H 1.48497 * 109.47442 * 210.00684 * 20 18 16 23 23 H 1.48505 * 109.47243 * 330.00575 * 20 18 16 24 24 C 1.47452 * 110.99819 * 190.00239 * 11 10 7 25 25 H 1.09000 * 109.46739 * 299.99875 * 1 2 3 26 26 H 1.09001 * 109.46744 * 59.99022 * 1 2 3 27 27 H 1.08992 * 109.47362 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47565 * 185.61376 * 3 2 1 29 29 H 1.08999 * 109.47662 * 305.61526 * 3 2 1 30 30 H 1.09001 * 109.47303 * 65.61508 * 3 2 1 31 31 H 1.09010 * 109.47068 * 65.54300 * 6 2 1 32 32 H 1.08999 * 109.47513 * 305.54660 * 6 2 1 33 33 H 0.96700 * 113.99428 * 299.99566 * 9 7 6 34 34 H 1.08998 * 109.46747 * 65.00446 * 10 7 6 35 35 H 1.08996 * 109.46962 * 305.00612 * 10 7 6 36 36 H 1.08990 * 110.37372 * 265.18733 * 12 11 10 37 37 H 1.09002 * 110.37394 * 27.53244 * 12 11 10 38 38 H 1.09003 * 110.98695 * 81.02271 * 13 12 11 39 39 H 1.08998 * 110.98793 * 204.80081 * 13 12 11 40 40 H 0.96699 * 114.00443 * 293.43440 * 15 14 13 41 41 H 0.96993 * 120.00093 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.88633 * 356.14935 * 24 11 10 43 43 H 1.08996 * 109.88717 * 117.16949 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0206 -0.6939 -1.2020 5 7 2.3993 -1.2294 -2.1295 6 6 2.0401 -0.7213 1.2491 7 6 3.5637 -0.6018 1.3208 8 1 3.8486 0.4489 1.2669 9 8 4.1491 -1.3108 0.2269 10 6 4.0606 -1.1979 2.6394 11 7 5.5076 -0.9763 2.7624 12 6 5.8088 0.4569 2.9645 13 6 7.0537 0.4733 3.8863 14 6 6.7650 -0.7278 4.8291 15 8 5.8959 -0.3361 5.8936 16 6 8.0475 -1.3044 5.3711 17 1 8.3538 -2.3006 5.0877 18 6 8.8298 -0.5603 6.2285 19 7 8.4566 0.6526 6.5738 20 14 10.4191 -1.2753 6.9008 21 1 11.5392 -0.9396 5.9855 22 1 10.6896 -0.7040 8.2445 23 1 10.2921 -2.7511 7.0070 24 6 6.0642 -1.7375 3.8959 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1254 1.4441 -0.1005 29 1 1.5970 1.9845 -0.8354 30 1 1.7612 1.9264 0.9360 31 1 1.7600 -1.7737 1.2008 32 1 1.5979 -0.2682 2.1364 33 1 3.9373 -2.2542 0.2113 34 1 3.8543 -2.2681 2.6549 35 1 3.5472 -0.7168 3.4719 36 1 6.0359 0.9350 2.0117 37 1 4.9704 0.9561 3.4502 38 1 7.9660 0.3069 3.3134 39 1 7.1120 1.4062 4.4470 40 1 6.2886 0.2980 6.5090 41 1 9.0071 1.1763 7.1767 42 1 5.2616 -2.2432 4.4328 43 1 6.7856 -2.4693 3.5326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598626379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:04 Heat of formation + Delta-G solvation = -81.021211 kcal Electronic energy + Delta-G solvation = -23056.675945 eV Core-core repulsion = 19715.495392 eV Total energy + Delta-G solvation = -3341.180553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.47571 -38.18491 -36.35572 -34.86984 -34.43634 -32.08314 -30.93777 -28.90453 -28.10856 -27.71520 -25.75232 -24.04987 -22.68561 -21.62541 -20.02562 -19.44935 -17.29385 -17.13959 -16.18585 -15.73870 -15.02466 -14.90813 -14.87502 -14.61639 -14.11583 -13.92597 -13.74909 -13.31380 -13.30065 -12.70550 -12.59136 -12.23425 -12.14224 -11.99457 -11.89207 -11.81146 -11.66606 -11.38373 -11.29503 -11.26718 -11.18253 -10.91910 -10.60060 -10.50650 -10.42510 -10.33329 -10.00097 -9.61670 -9.23627 -8.62640 -8.10674 -7.60103 -6.22363 -4.29108 2.82672 2.88125 3.22595 3.29644 3.33580 3.76804 4.16014 4.30941 4.49403 4.56202 4.73988 4.80085 5.02774 5.06714 5.19212 5.27113 5.33266 5.41393 5.51108 5.57020 5.57086 5.69783 5.72777 5.80878 5.92398 5.94334 6.03831 6.12554 6.24952 6.30382 6.41987 6.54406 6.94631 7.06557 7.41685 7.47408 7.64055 7.65764 7.73935 7.81792 7.86672 8.13777 8.72336 9.38731 9.50396 10.84954 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038869 B = 0.003534 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.199542 B = 7922.127116 C = 8119.615719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.040 3.960 3 C -0.148 4.148 4 C 0.222 3.778 5 N -0.434 5.434 6 C -0.144 4.144 7 C 0.104 3.896 8 H 0.105 0.895 9 O -0.543 6.543 10 C 0.022 3.978 11 N -0.520 5.520 12 C 0.041 3.959 13 C -0.131 4.131 14 C 0.237 3.763 15 O -0.593 6.593 16 C -0.531 4.531 17 H 0.062 0.938 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.058 3.942 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.366 0.634 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.384 0.616 41 H 0.267 0.733 42 H 0.044 0.956 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.931 1.628 -7.987 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 C -0.206 4.206 4 C -0.096 4.096 5 N -0.109 5.109 6 C -0.183 4.183 7 C 0.045 3.955 8 H 0.123 0.877 9 O -0.346 6.346 10 C -0.107 4.107 11 N -0.243 5.243 12 C -0.086 4.086 13 C -0.170 4.170 14 C 0.197 3.803 15 O -0.403 6.403 16 C -0.570 4.570 17 H 0.080 0.920 18 C -0.132 4.132 19 N -0.540 5.540 20 Si 0.728 3.272 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.069 4.069 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.212 0.788 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.235 0.765 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.242 0.966 -10.192 17.539 hybrid contribution 0.577 0.013 2.024 2.105 sum -13.665 0.979 -8.168 15.950 Atomic orbital electron populations 1.21903 0.91716 1.03046 1.03343 1.18179 0.96086 0.94942 0.87114 1.21995 1.02727 0.92623 1.03265 1.28794 0.92973 0.93788 0.94060 1.81147 1.08619 1.09090 1.12094 1.22494 0.97760 1.01484 0.96571 1.22098 0.89266 0.97765 0.86385 0.87728 1.86649 1.75767 1.24379 1.47850 1.22942 0.90737 1.00524 0.96530 1.63629 1.10120 1.08133 1.42457 1.23079 0.98564 0.88444 0.98531 1.23205 0.95178 1.01492 0.97132 1.19746 0.87438 0.89081 0.84077 1.86056 1.45028 1.67169 1.42084 1.21616 1.05520 1.01764 1.28057 0.91961 1.25008 0.98085 0.94570 0.95562 1.69586 1.39220 1.09737 1.35487 0.86450 0.83062 0.79421 0.78220 1.20491 1.21112 1.19779 1.22840 0.98092 0.96693 0.89322 0.90441 0.91754 0.91807 0.90919 0.91790 0.90437 0.90686 0.88858 0.78751 0.91380 0.93916 0.92084 0.94657 0.91862 0.91006 0.76475 0.92298 0.93775 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.43 37.16 0.31 -0.49 16 2 C 0.04 0.32 0.74 -157.30 -0.12 0.21 16 3 C -0.15 -1.12 7.74 37.15 0.29 -0.83 16 4 C 0.22 2.56 11.62 -20.76 -0.24 2.31 16 5 N -0.43 -6.27 18.50 42.15 0.78 -5.49 16 6 C -0.14 -1.19 4.06 -26.73 -0.11 -1.30 16 7 C 0.10 1.24 2.65 -26.73 -0.07 1.17 16 8 H 0.11 1.32 5.34 -51.93 -0.28 1.04 16 9 O -0.54 -7.52 11.08 -35.23 -0.39 -7.91 16 10 C 0.02 0.32 4.20 -3.82 -0.02 0.30 16 11 N -0.52 -9.75 5.11 -231.25 -1.18 -10.93 16 12 C 0.04 0.79 5.71 -2.30 -0.01 0.78 16 13 C -0.13 -3.02 5.68 -24.45 -0.14 -3.15 16 14 C 0.24 5.82 0.86 -89.81 -0.08 5.74 16 15 O -0.59 -15.16 13.09 -35.23 -0.46 -15.62 16 16 C -0.53 -14.22 8.22 -34.44 -0.28 -14.50 16 17 H 0.06 1.66 7.53 -52.48 -0.40 1.27 16 18 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 19 N -0.90 -23.86 10.72 55.43 0.59 -23.26 16 20 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.06 1.25 6.21 -2.83 -0.02 1.23 16 25 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.37 4.34 9.05 45.56 0.41 4.75 16 34 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 35 H 0.04 0.64 7.85 -51.93 -0.41 0.24 16 36 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 37 H 0.04 0.66 7.62 -51.93 -0.40 0.26 16 38 H 0.06 1.52 8.04 -51.93 -0.42 1.10 16 39 H 0.07 1.73 7.78 -51.93 -0.40 1.33 16 40 H 0.38 10.06 6.99 45.56 0.32 10.37 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.04 0.93 7.47 -51.93 -0.39 0.55 16 43 H 0.08 1.72 7.63 -51.93 -0.40 1.32 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -30.02 344.06 -6.70 -36.71 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.62 Total: 12.47 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.58 Total: -6.79 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.19 Total: -39.69 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.85 Total: -23.53 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.02 -6.70 -36.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598626379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.306 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds