Wall clock time and date at job start Tue Mar 31 2020 02:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47111 * 2 1 4 4 C 1.47203 * 109.47351 * 239.99854 * 2 1 3 5 5 N 2.60801 * 109.47163 * 240.00042 * 2 1 3 6 6 C 1.53001 * 109.46826 * 119.99912 * 2 1 3 7 7 C 1.53005 * 109.47049 * 54.74429 * 6 2 1 8 8 H 1.08993 * 109.47014 * 305.50080 * 7 6 2 9 9 O 1.42899 * 109.47175 * 65.50200 * 7 6 2 10 10 C 1.52998 * 109.47001 * 185.50034 * 7 6 2 11 11 N 1.46896 * 109.47124 * 179.97438 * 10 7 6 12 12 C 1.48561 * 111.00062 * 290.12607 * 11 10 7 13 13 C 1.54383 * 104.59578 * 200.95816 * 12 11 10 14 14 C 1.54261 * 105.05857 * 23.85296 * 13 12 11 15 15 O 1.42902 * 110.32383 * 118.99834 * 14 13 12 16 16 C 1.50701 * 110.32252 * 241.10379 * 14 13 12 17 17 H 1.08000 * 120.00180 * 118.55257 * 16 14 13 18 18 C 1.37877 * 119.99817 * 298.81666 * 16 14 13 19 19 N 1.31511 * 120.00260 * 359.73565 * 18 16 14 20 20 Si 1.86801 * 119.99588 * 179.72504 * 18 16 14 21 21 H 1.48497 * 109.47459 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47123 * 120.00810 * 20 18 16 23 23 H 1.48504 * 109.47129 * 240.00481 * 20 18 16 24 24 C 1.48566 * 111.00064 * 174.70798 * 11 10 7 25 25 H 1.09001 * 109.47222 * 294.40856 * 1 2 3 26 26 H 1.09001 * 109.47116 * 54.40687 * 1 2 3 27 27 H 1.09002 * 109.47078 * 174.40137 * 1 2 3 28 28 H 1.09002 * 109.46957 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47433 * 299.99898 * 3 2 1 30 30 H 1.08999 * 109.46977 * 60.00391 * 3 2 1 31 31 H 1.08990 * 109.47663 * 294.73852 * 6 2 1 32 32 H 1.09006 * 109.46943 * 174.73649 * 6 2 1 33 33 H 0.96695 * 114.00214 * 59.99574 * 9 7 6 34 34 H 1.09003 * 109.47422 * 59.99833 * 10 7 6 35 35 H 1.09001 * 109.46998 * 299.99893 * 10 7 6 36 36 H 1.09007 * 110.40742 * 82.18297 * 12 11 10 37 37 H 1.08994 * 110.41028 * 319.73839 * 12 11 10 38 38 H 1.08997 * 110.32190 * 264.96074 * 13 12 11 39 39 H 1.08999 * 110.41049 * 142.79082 * 13 12 11 40 40 H 0.96695 * 113.99924 * 62.82301 * 15 14 13 41 41 H 0.97003 * 120.00004 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.41009 * 40.26012 * 24 11 10 43 43 H 1.08999 * 110.40929 * 277.81840 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 6 2.0399 -0.7212 1.2493 7 6 1.4248 -2.1206 1.3171 8 1 0.3389 -2.0430 1.2643 9 8 1.9003 -2.9036 0.2203 10 6 1.8250 -2.7903 2.6332 11 7 1.2340 -4.1335 2.6986 12 6 -0.2401 -4.0590 2.8680 13 6 -0.6350 -5.4338 3.4487 14 6 0.6436 -5.9632 4.1304 15 8 0.4170 -6.1570 5.5279 16 6 1.0830 -7.2538 3.4883 17 1 2.0470 -7.3158 3.0052 18 6 0.2522 -8.3538 3.5128 19 7 -0.9216 -8.2784 4.1010 20 14 0.7937 -9.9513 2.7102 21 1 2.1460 -9.7763 2.1220 22 1 0.8340 -11.0293 3.7308 23 1 -0.1682 -10.3186 1.6401 24 6 1.7034 -4.8637 3.9043 25 1 -0.3634 0.4247 0.9358 26 1 -0.3633 0.5981 -0.8357 27 1 -0.3633 -1.0228 -0.1003 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.7556 -0.1560 2.1367 32 1 3.1259 -0.8036 1.2034 33 1 2.8607 -3.0145 0.2035 34 1 1.4624 -2.1931 3.4698 35 1 2.9110 -2.8678 2.6859 36 1 -0.7257 -3.8992 1.9052 37 1 -0.5028 -3.2625 3.5642 38 1 -0.9446 -6.1074 2.6497 39 1 -1.4353 -5.3218 4.1801 40 1 -0.2566 -6.8210 5.7288 41 1 -1.5063 -9.0522 4.1180 42 1 1.7448 -4.1932 4.7626 43 1 2.6811 -5.3098 3.7218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598626380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:06 Heat of formation + Delta-G solvation = -77.660974 kcal Electronic energy + Delta-G solvation = -23098.042895 eV Core-core repulsion = 19757.008053 eV Total energy + Delta-G solvation = -3341.034842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.47475 -38.16415 -36.35420 -34.87619 -34.52746 -32.05965 -30.96920 -28.90162 -27.91232 -27.73417 -25.68995 -24.06581 -22.70306 -21.67283 -20.15636 -19.34335 -17.32302 -16.98610 -16.17251 -15.76927 -15.13762 -14.92025 -14.77821 -14.58927 -14.22543 -13.76037 -13.74850 -13.42942 -13.23432 -12.68002 -12.59045 -12.24724 -12.20604 -12.03809 -11.97769 -11.80040 -11.63184 -11.42132 -11.33600 -11.23682 -11.10288 -10.91498 -10.54926 -10.47790 -10.36190 -10.27647 -9.97232 -9.60972 -8.98885 -8.52763 -8.09099 -7.77027 -6.12521 -4.17594 2.84041 2.89626 3.28593 3.36883 3.42715 3.76232 4.12091 4.39898 4.48145 4.53904 4.70198 4.78642 5.01080 5.12954 5.16337 5.24773 5.29681 5.38842 5.47374 5.52578 5.54432 5.66842 5.70950 5.78107 5.82836 5.90146 5.97815 6.09022 6.19889 6.24932 6.37923 6.53669 6.89326 7.09241 7.25126 7.58000 7.66581 7.70348 7.71896 7.87132 7.90370 8.25574 8.85160 9.46161 9.55009 10.94961 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.003996 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.752804 B = 7005.381309 C = 7495.526969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 C -0.142 4.142 4 C 0.220 3.780 5 N -0.431 5.431 6 C -0.143 4.143 7 C 0.105 3.895 8 H 0.104 0.896 9 O -0.539 6.539 10 C 0.012 3.988 11 N -0.488 5.488 12 C 0.032 3.968 13 C -0.120 4.120 14 C 0.249 3.751 15 O -0.596 6.596 16 C -0.516 4.516 17 H 0.062 0.938 18 C 0.065 3.935 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.053 3.947 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.368 0.632 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.382 0.618 41 H 0.264 0.736 42 H 0.028 0.972 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 18.786 -3.258 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.037 3.963 3 C -0.200 4.200 4 C -0.099 4.099 5 N -0.106 5.106 6 C -0.183 4.183 7 C 0.046 3.954 8 H 0.121 0.879 9 O -0.342 6.342 10 C -0.117 4.117 11 N -0.212 5.212 12 C -0.096 4.096 13 C -0.158 4.158 14 C 0.209 3.791 15 O -0.405 6.405 16 C -0.555 4.555 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.542 5.542 20 Si 0.727 3.273 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.075 4.075 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.214 0.786 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.233 0.767 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.876 18.017 -5.221 18.977 hybrid contribution -0.041 -0.662 0.813 1.050 sum 2.835 17.355 -4.408 18.129 Atomic orbital electron populations 1.21996 0.91647 1.03782 1.03189 1.18162 0.96836 0.94118 0.87139 1.21900 1.01817 0.92973 1.03301 1.28768 0.93752 0.93230 0.94109 1.81160 1.08659 1.08735 1.12080 1.22494 1.01693 0.97557 0.96529 1.22039 0.99658 0.87367 0.86360 0.87856 1.86666 1.26690 1.73690 1.47201 1.22963 1.00289 0.91725 0.96718 1.65293 1.04958 1.12601 1.38345 1.23170 0.88841 0.98630 0.98916 1.22830 0.99244 0.93280 1.00494 1.19254 0.88861 0.91840 0.79162 1.86071 1.64148 1.64135 1.26155 1.21683 1.03217 0.95488 1.35068 0.91979 1.24999 0.94592 0.99092 0.94899 1.69703 1.09129 1.30721 1.44638 0.86428 0.78896 0.83005 0.79009 1.19689 1.21052 1.20980 1.22994 0.99806 0.95476 0.89222 0.90534 0.91771 0.90879 0.91799 0.91733 0.90519 0.88991 0.90629 0.78584 0.94440 0.91047 0.91563 0.95573 0.90654 0.93159 0.76705 0.92575 0.95325 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 7.75 37.16 0.29 -0.79 16 2 C 0.04 0.32 0.74 -157.29 -0.12 0.20 16 3 C -0.14 -0.76 8.43 37.16 0.31 -0.45 16 4 C 0.22 2.56 11.60 -20.76 -0.24 2.32 16 5 N -0.43 -6.38 18.49 42.15 0.78 -5.60 16 6 C -0.14 -1.12 4.06 -26.73 -0.11 -1.23 16 7 C 0.11 1.23 2.62 -26.73 -0.07 1.16 16 8 H 0.10 1.26 5.27 -51.93 -0.27 0.99 16 9 O -0.54 -7.80 10.97 -35.23 -0.39 -8.19 16 10 C 0.01 0.17 4.47 -3.83 -0.02 0.16 16 11 N -0.49 -9.27 5.24 -229.97 -1.20 -10.47 16 12 C 0.03 0.62 5.74 -2.18 -0.01 0.61 16 13 C -0.12 -2.81 5.55 -25.35 -0.14 -2.95 16 14 C 0.25 6.24 1.06 -90.39 -0.10 6.14 16 15 O -0.60 -15.58 12.95 -35.23 -0.46 -16.03 16 16 C -0.52 -14.17 8.10 -34.44 -0.28 -14.45 16 17 H 0.06 1.73 7.53 -52.49 -0.40 1.34 16 18 C 0.07 1.76 5.01 -17.82 -0.09 1.67 16 19 N -0.90 -24.48 10.80 55.43 0.60 -23.88 16 20 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.05 1.14 5.76 -2.18 -0.01 1.12 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.68 6.56 -51.93 -0.34 0.34 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.37 4.65 9.04 45.56 0.41 5.06 16 34 H 0.04 0.49 7.88 -51.93 -0.41 0.08 16 35 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 36 H 0.07 1.21 7.76 -51.92 -0.40 0.81 16 37 H 0.03 0.46 7.82 -51.93 -0.41 0.05 16 38 H 0.07 1.96 7.22 -51.93 -0.38 1.58 16 39 H 0.05 1.18 7.98 -51.93 -0.41 0.76 16 40 H 0.38 10.13 7.31 45.56 0.33 10.47 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.03 0.60 7.94 -51.93 -0.41 0.18 16 43 H 0.07 1.65 7.67 -51.93 -0.40 1.25 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -31.27 343.61 -6.69 -37.96 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -5.60 Total: 11.14 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -0.58 Total: -6.48 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.17 Total: -39.95 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.84 Total: -24.22 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.27 -6.69 -37.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598626380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.703 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds