Wall clock time and date at job start Tue Mar 31 2020 02:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47111 * 2 1 4 4 C 1.47203 * 109.47351 * 239.99854 * 2 1 3 5 5 N 2.60801 * 109.47163 * 240.00042 * 2 1 3 6 6 C 1.53001 * 109.46826 * 119.99912 * 2 1 3 7 7 C 1.53005 * 109.47049 * 54.74429 * 6 2 1 8 8 H 1.08993 * 109.47014 * 305.50080 * 7 6 2 9 9 O 1.42899 * 109.47175 * 65.50200 * 7 6 2 10 10 C 1.52998 * 109.47001 * 185.50034 * 7 6 2 11 11 N 1.46896 * 109.47124 * 179.97438 * 10 7 6 12 12 C 1.48561 * 111.00062 * 290.12607 * 11 10 7 13 13 C 1.54383 * 104.59578 * 200.95816 * 12 11 10 14 14 C 1.54261 * 105.05857 * 23.85296 * 13 12 11 15 15 O 1.42902 * 110.32383 * 118.99834 * 14 13 12 16 16 C 1.50701 * 110.32252 * 241.10379 * 14 13 12 17 17 H 1.08000 * 120.00180 * 118.55257 * 16 14 13 18 18 C 1.37877 * 119.99817 * 298.81666 * 16 14 13 19 19 N 1.31511 * 120.00260 * 359.73565 * 18 16 14 20 20 Si 1.86801 * 119.99588 * 179.72504 * 18 16 14 21 21 H 1.48497 * 109.47459 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47123 * 120.00810 * 20 18 16 23 23 H 1.48504 * 109.47129 * 240.00481 * 20 18 16 24 24 C 1.48566 * 111.00064 * 174.70798 * 11 10 7 25 25 H 1.09001 * 109.47222 * 294.40856 * 1 2 3 26 26 H 1.09001 * 109.47116 * 54.40687 * 1 2 3 27 27 H 1.09002 * 109.47078 * 174.40137 * 1 2 3 28 28 H 1.09002 * 109.46957 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47433 * 299.99898 * 3 2 1 30 30 H 1.08999 * 109.46977 * 60.00391 * 3 2 1 31 31 H 1.08990 * 109.47663 * 294.73852 * 6 2 1 32 32 H 1.09006 * 109.46943 * 174.73649 * 6 2 1 33 33 H 0.96695 * 114.00214 * 59.99574 * 9 7 6 34 34 H 1.09003 * 109.47422 * 59.99833 * 10 7 6 35 35 H 1.09001 * 109.46998 * 299.99893 * 10 7 6 36 36 H 1.09007 * 110.40742 * 82.18297 * 12 11 10 37 37 H 1.08994 * 110.41028 * 319.73839 * 12 11 10 38 38 H 1.08997 * 110.32190 * 264.96074 * 13 12 11 39 39 H 1.08999 * 110.41049 * 142.79082 * 13 12 11 40 40 H 0.96695 * 113.99924 * 62.82301 * 15 14 13 41 41 H 0.97003 * 120.00004 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.41009 * 40.26012 * 24 11 10 43 43 H 1.08999 * 110.40929 * 277.81840 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 6 2.0399 -0.7212 1.2493 7 6 1.4248 -2.1206 1.3171 8 1 0.3389 -2.0430 1.2643 9 8 1.9003 -2.9036 0.2203 10 6 1.8250 -2.7903 2.6332 11 7 1.2340 -4.1335 2.6986 12 6 -0.2401 -4.0590 2.8680 13 6 -0.6350 -5.4338 3.4487 14 6 0.6436 -5.9632 4.1304 15 8 0.4170 -6.1570 5.5279 16 6 1.0830 -7.2538 3.4883 17 1 2.0470 -7.3158 3.0052 18 6 0.2522 -8.3538 3.5128 19 7 -0.9216 -8.2784 4.1010 20 14 0.7937 -9.9513 2.7102 21 1 2.1460 -9.7763 2.1220 22 1 0.8340 -11.0293 3.7308 23 1 -0.1682 -10.3186 1.6401 24 6 1.7034 -4.8637 3.9043 25 1 -0.3634 0.4247 0.9358 26 1 -0.3633 0.5981 -0.8357 27 1 -0.3633 -1.0228 -0.1003 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.7556 -0.1560 2.1367 32 1 3.1259 -0.8036 1.2034 33 1 2.8607 -3.0145 0.2035 34 1 1.4624 -2.1931 3.4698 35 1 2.9110 -2.8678 2.6859 36 1 -0.7257 -3.8992 1.9052 37 1 -0.5028 -3.2625 3.5642 38 1 -0.9446 -6.1074 2.6497 39 1 -1.4353 -5.3218 4.1801 40 1 -0.2566 -6.8210 5.7288 41 1 -1.5063 -9.0522 4.1180 42 1 1.7448 -4.1932 4.7626 43 1 2.6811 -5.3098 3.7218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598626380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:05 Heat of formation + Delta-G solvation = -102.947534 kcal Electronic energy + Delta-G solvation = -23099.139402 eV Core-core repulsion = 19757.008053 eV Total energy + Delta-G solvation = -3342.131350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52737 -39.55095 -37.51436 -36.24702 -35.67697 -34.15324 -32.29998 -30.15671 -29.62703 -28.22341 -27.12563 -25.59769 -23.64752 -22.67548 -21.60849 -21.18488 -19.04213 -18.15511 -17.19016 -16.92332 -16.70836 -16.56412 -15.94857 -15.68038 -15.54968 -15.28298 -14.65655 -14.60633 -14.34881 -14.03941 -13.80291 -13.60128 -13.38305 -13.20091 -13.04272 -12.91378 -12.79100 -12.64890 -12.52860 -12.40826 -12.33022 -12.25873 -12.05220 -12.03594 -11.88872 -11.84542 -11.35833 -10.95897 -10.66237 -10.53687 -10.11002 -9.21015 -8.19709 -6.31655 1.37374 1.40703 1.51480 1.96753 2.03839 2.39909 2.92304 3.06083 3.13300 3.63883 3.71902 3.93682 3.99722 4.06159 4.15909 4.28031 4.34752 4.39424 4.48710 4.52397 4.62378 4.69389 4.80099 4.87034 4.88009 4.98984 5.00917 5.02854 5.07267 5.15171 5.21431 5.28231 5.38238 5.41022 5.48036 5.67719 5.79419 6.02878 6.19595 6.33486 6.73140 6.80594 6.90412 7.36715 7.44993 8.86084 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.003996 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.752804 B = 7005.381309 C = 7495.526969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 C -0.138 4.138 4 C 0.240 3.760 5 N -0.497 5.497 6 C -0.133 4.133 7 C 0.107 3.893 8 H 0.100 0.900 9 O -0.565 6.565 10 C 0.011 3.989 11 N -0.504 5.504 12 C 0.045 3.955 13 C -0.114 4.114 14 C 0.230 3.770 15 O -0.602 6.602 16 C -0.541 4.541 17 H 0.047 0.953 18 C 0.026 3.974 19 N -0.914 5.914 20 Si 0.954 3.046 21 H -0.275 1.275 22 H -0.276 1.276 23 H -0.281 1.281 24 C 0.063 3.937 25 H 0.104 0.896 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.372 0.628 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.376 0.624 41 H 0.267 0.733 42 H 0.038 0.962 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 21.110 -2.725 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.039 3.961 3 C -0.196 4.196 4 C -0.077 4.077 5 N -0.173 5.173 6 C -0.172 4.172 7 C 0.047 3.953 8 H 0.118 0.882 9 O -0.370 6.370 10 C -0.117 4.117 11 N -0.228 5.228 12 C -0.083 4.083 13 C -0.152 4.152 14 C 0.191 3.809 15 O -0.410 6.410 16 C -0.579 4.579 17 H 0.066 0.934 18 C -0.173 4.173 19 N -0.555 5.555 20 Si 0.780 3.220 21 H -0.200 1.200 22 H -0.202 1.202 23 H -0.207 1.207 24 C -0.065 4.065 25 H 0.122 0.878 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.219 0.781 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.226 0.774 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.093 20.361 -4.687 21.121 hybrid contribution -0.131 -1.382 0.669 1.541 sum 2.962 18.979 -4.017 19.624 Atomic orbital electron populations 1.22035 0.91061 1.02595 1.04982 1.18472 0.97193 0.95228 0.85229 1.21921 1.01970 0.90967 1.04739 1.29669 0.92091 0.91886 0.94092 1.81169 1.10920 1.10939 1.14292 1.22440 1.01943 0.95125 0.97702 1.22137 0.99757 0.89006 0.84361 0.88235 1.86647 1.27247 1.74690 1.48436 1.23121 1.00653 0.89293 0.98656 1.65233 1.04774 1.15928 1.36903 1.23029 0.89204 0.96504 0.99571 1.22612 0.98320 0.95210 0.99100 1.19530 0.90702 0.92290 0.78401 1.86063 1.63981 1.63833 1.27111 1.21901 1.02889 0.97257 1.35849 0.93441 1.25629 0.94720 1.01653 0.95346 1.69772 1.09507 1.31400 1.44809 0.85570 0.78226 0.79866 0.78289 1.19988 1.20208 1.20702 1.22778 0.98120 0.94903 0.90722 0.87763 0.91263 0.93312 0.91637 0.91680 0.87767 0.85655 0.89802 0.78079 0.92370 0.90091 0.90772 0.93071 0.94145 0.93945 0.77414 0.92357 0.94381 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 7.75 71.98 0.56 -1.17 16 2 C 0.04 0.53 0.74 -53.99 -0.04 0.49 16 3 C -0.14 -0.95 8.43 71.98 0.61 -0.34 16 4 C 0.24 5.34 11.60 89.44 1.04 6.37 16 5 N -0.50 -14.82 18.49 20.01 0.37 -14.45 16 6 C -0.13 -1.56 4.06 30.60 0.12 -1.44 16 7 C 0.11 2.22 2.62 30.60 0.08 2.30 16 8 H 0.10 2.17 5.27 -2.39 -0.01 2.16 16 9 O -0.57 -15.90 10.97 -148.98 -1.63 -17.53 16 10 C 0.01 0.28 4.47 86.30 0.39 0.66 16 11 N -0.50 -18.44 5.24 -881.48 -4.62 -23.06 16 12 C 0.04 1.65 5.74 86.45 0.50 2.15 16 13 C -0.11 -5.37 5.55 31.49 0.17 -5.19 16 14 C 0.23 11.66 1.06 -10.64 -0.01 11.65 16 15 O -0.60 -31.75 12.95 -148.98 -1.93 -33.68 16 16 C -0.54 -30.28 8.10 25.60 0.21 -30.07 16 17 H 0.05 2.72 7.53 -2.91 -0.02 2.70 16 18 C 0.03 1.43 5.01 84.66 0.42 1.85 16 19 N -0.91 -50.34 10.80 21.45 0.23 -50.11 16 20 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 C 0.06 2.67 5.76 86.45 0.50 3.17 16 25 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.82 6.56 -2.39 -0.02 0.81 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.37 9.25 9.04 -74.06 -0.67 8.58 16 34 H 0.06 1.25 7.88 -2.39 -0.02 1.23 16 35 H 0.08 1.87 8.13 -2.39 -0.02 1.85 16 36 H 0.07 2.62 7.76 -2.38 -0.02 2.60 16 37 H 0.05 1.64 7.82 -2.39 -0.02 1.62 16 38 H 0.04 2.15 7.22 -2.39 -0.02 2.13 16 39 H 0.04 2.01 7.98 -2.39 -0.02 1.99 16 40 H 0.38 20.36 7.31 -74.06 -0.54 19.82 16 41 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.04 1.52 7.94 -2.39 -0.02 1.50 16 43 H 0.06 2.83 7.67 -2.39 -0.02 2.81 16 Total: -1.00 -69.75 343.61 -1.21 -70.96 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: -0.20 Total: 31.05 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 4.54 Total: -9.58 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -4.02 Total: -87.61 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -3.56 Total: -51.21 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.75 -1.21 -70.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598626380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.986 kcal (2) G-P(sol) polarization free energy of solvation -69.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds