Wall clock time and date at job start Tue Mar 31 2020 01:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34511 * 125.79057 * 2 1 4 4 C 1.41388 * 106.84043 * 180.02562 * 3 2 1 5 5 C 1.34507 * 106.84066 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.79074 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.47178 * 89.99721 * 6 5 4 8 8 C 1.46901 * 111.00024 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47409 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47406 * 59.99712 * 9 8 7 11 11 O 1.42905 * 109.46872 * 299.99796 * 9 8 7 12 12 C 1.52998 * 109.47318 * 179.97438 * 9 8 7 13 13 N 1.46906 * 109.47197 * 182.15693 * 12 9 8 14 14 C 1.46901 * 110.99925 * 199.76710 * 13 12 9 15 15 C 1.46892 * 110.99774 * 75.81142 * 13 12 9 16 16 C 1.50701 * 109.46993 * 189.99771 * 15 13 12 17 17 H 1.07994 * 120.00328 * 0.02562 * 16 15 13 18 18 C 1.37887 * 119.99865 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00027 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99584 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47258 * 90.00647 * 20 18 16 22 22 H 1.48502 * 109.47121 * 210.00245 * 20 18 16 23 23 H 1.48497 * 109.47375 * 330.00253 * 20 18 16 24 24 O 1.34308 * 108.42471 * 0.25746 * 5 4 3 25 25 H 1.09003 * 109.46821 * 90.00032 * 1 2 3 26 26 H 1.09001 * 109.47253 * 209.99785 * 1 2 3 27 27 H 1.08998 * 109.47352 * 330.00061 * 1 2 3 28 28 H 1.07994 * 126.58123 * 0.05609 * 3 2 1 29 29 H 1.08002 * 126.57948 * 180.02562 * 4 3 2 30 30 H 1.09006 * 109.46941 * 329.99425 * 6 5 4 31 31 H 1.08997 * 109.47222 * 210.00036 * 6 5 4 32 32 H 1.00899 * 111.00258 * 56.05122 * 7 6 5 33 33 H 1.08995 * 109.47180 * 59.99940 * 8 7 6 34 34 H 1.09002 * 109.47373 * 300.00035 * 8 7 6 35 35 H 0.96701 * 114.00201 * 299.99769 * 11 9 8 36 36 H 1.09000 * 109.47245 * 62.15773 * 12 9 8 37 37 H 1.09002 * 109.47237 * 302.15962 * 12 9 8 38 38 H 1.08999 * 109.47031 * 291.01429 * 14 13 12 39 39 H 1.09002 * 109.47006 * 51.00954 * 14 13 12 40 40 H 1.08993 * 109.46940 * 171.01218 * 14 13 12 41 41 H 1.08994 * 109.47530 * 310.00139 * 15 13 12 42 42 H 1.09008 * 109.47253 * 70.00012 * 15 13 12 43 43 H 0.97000 * 119.99606 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6380 -0.0019 7 7 5.1567 -1.9396 1.3829 8 6 6.3158 -2.8412 1.4218 9 6 6.6871 -3.1323 2.8772 10 1 5.8429 -3.6039 3.3803 11 8 7.0131 -1.9086 3.5394 12 6 7.8939 -4.0718 2.9177 13 7 8.2184 -4.3924 4.3141 14 6 9.5980 -4.8823 4.4349 15 6 7.2646 -5.3634 4.8666 16 6 7.4739 -5.4824 6.3542 17 1 8.2386 -4.8952 6.8407 18 6 6.6882 -6.3404 7.0945 19 7 5.7566 -7.0551 6.5022 20 14 6.9472 -6.4873 8.9386 21 1 6.0911 -5.4968 9.6392 22 1 6.5835 -7.8572 9.3819 23 1 8.3729 -6.2250 9.2607 24 8 2.2924 -1.0895 -0.0072 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9666 2.1203 0.0008 29 1 4.5213 1.2432 -0.0004 30 1 5.6041 -1.1585 -0.5153 31 1 4.5107 -2.5631 -0.5164 32 1 4.3803 -2.3259 1.8988 33 1 7.1598 -2.3698 0.9184 34 1 6.0671 -3.7748 0.9171 35 1 7.7572 -1.4338 3.1446 36 1 8.7490 -3.5853 2.4485 37 1 7.6579 -4.9899 2.3795 38 1 9.6775 -5.8632 3.9663 39 1 10.2753 -4.1868 3.9391 40 1 9.8649 -4.9604 5.4888 41 1 6.2472 -5.0263 4.6686 42 1 7.4230 -6.3350 4.3985 43 1 5.2042 -7.6590 7.0229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601968740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:21 Heat of formation + Delta-G solvation = -31.710924 kcal Electronic energy + Delta-G solvation = -21721.503972 eV Core-core repulsion = 18382.461674 eV Total energy + Delta-G solvation = -3339.042298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.67254 -38.18018 -36.14391 -34.98176 -33.28208 -32.46420 -32.18328 -30.04951 -27.98687 -27.22179 -25.42386 -23.87498 -22.95389 -21.90009 -21.52043 -20.26946 -20.00025 -17.00540 -16.52840 -16.35724 -16.19037 -15.52079 -15.07934 -14.71253 -14.62065 -14.45904 -14.16371 -13.51547 -13.43884 -13.30066 -13.12631 -12.91512 -12.80197 -12.43550 -12.29755 -12.01320 -11.88037 -11.68419 -11.36505 -11.09893 -10.92364 -10.67710 -10.59001 -10.35870 -9.96659 -9.74250 -9.51372 -9.11019 -8.60031 -8.39347 -8.33055 -7.17870 -5.99574 -3.99787 1.56145 2.50188 2.75096 3.35645 3.41133 3.44855 4.08122 4.46229 4.48446 4.70348 4.82293 4.94016 4.94942 5.00615 5.18347 5.18497 5.28893 5.34360 5.36186 5.45529 5.45999 5.61604 5.70203 5.71492 5.74644 5.89979 6.03301 6.05614 6.10323 6.36482 6.43488 6.50166 6.73038 6.82078 7.06461 7.23875 7.29339 7.32962 7.83501 8.11002 8.20018 8.29216 8.58615 9.07557 9.64074 11.11649 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019271 B = 0.003022 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.645077 B = 9264.618704 C =10195.293479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.015 4.015 3 C -0.215 4.215 4 C -0.185 4.185 5 C -0.014 4.014 6 C 0.141 3.859 7 N -0.674 5.674 8 C 0.027 3.973 9 C 0.119 3.881 10 H 0.100 0.900 11 O -0.530 6.530 12 C 0.026 3.974 13 N -0.531 5.531 14 C 0.041 3.959 15 C 0.193 3.807 16 C -0.503 4.503 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.274 1.274 24 O -0.177 6.177 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.349 0.651 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.361 0.639 36 H 0.061 0.939 37 H 0.030 0.970 38 H 0.011 0.989 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.030 0.970 42 H -0.012 1.012 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 12.926 -16.873 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C -0.234 4.234 4 C -0.205 4.205 5 C -0.064 4.064 6 C 0.012 3.988 7 N -0.306 5.306 8 C -0.103 4.103 9 C 0.058 3.942 10 H 0.118 0.882 11 O -0.332 6.332 12 C -0.104 4.104 13 N -0.255 5.255 14 C -0.107 4.107 15 C 0.068 3.932 16 C -0.542 4.542 17 H 0.081 0.919 18 C -0.147 4.147 19 N -0.541 5.541 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.199 1.199 24 O -0.074 6.074 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.164 0.836 29 H 0.166 0.834 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.168 0.832 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.206 0.794 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.029 0.971 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.006 0.994 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.985 13.292 -16.102 21.466 hybrid contribution 0.209 -1.476 -0.166 1.500 sum -4.776 11.816 -16.269 20.666 Atomic orbital electron populations 1.20296 0.85247 1.04133 1.03301 1.22426 0.93962 0.84224 1.05973 1.21576 0.92853 0.99295 1.09641 1.21540 0.98036 0.93825 1.07139 1.22227 0.82596 0.94722 1.06819 1.20323 0.91002 0.95917 0.91518 1.60419 1.09758 1.49272 1.11189 1.22757 0.93826 0.94535 0.99140 1.21854 0.97437 0.85373 0.89510 0.88211 1.86694 1.54080 1.34918 1.57553 1.22684 0.97527 0.98015 0.92154 1.62022 1.03091 1.46368 1.14053 1.22192 0.89996 0.96280 1.02260 1.19782 0.90883 0.87474 0.95106 1.21158 1.18078 1.22725 0.92203 0.91867 1.24992 0.95237 0.95710 0.98784 1.69955 1.21418 1.26894 1.35834 0.86488 0.78513 0.77083 0.85272 1.20579 1.21398 1.19886 1.83951 1.16524 1.35228 1.71683 0.90288 0.90510 0.89376 0.83618 0.83432 0.88152 0.93744 0.83234 0.90687 0.94324 0.79438 0.92085 0.95141 0.97076 0.93898 0.90935 0.95205 0.99391 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.01 0.38 -0.14 16 2 C -0.02 -0.17 7.32 -35.63 -0.26 -0.43 16 3 C -0.21 -2.32 10.81 -39.70 -0.43 -2.75 16 4 C -0.19 -2.15 10.81 -39.70 -0.43 -2.58 16 5 C -0.01 -0.17 6.83 -35.63 -0.24 -0.41 16 6 C 0.14 1.52 6.22 -4.98 -0.03 1.49 16 7 N -0.67 -8.60 6.36 -115.06 -0.73 -9.33 16 8 C 0.03 0.34 5.35 -3.82 -0.02 0.32 16 9 C 0.12 1.94 3.25 -26.73 -0.09 1.85 16 10 H 0.10 1.95 6.73 -51.93 -0.35 1.60 16 11 O -0.53 -9.22 13.11 -35.23 -0.46 -9.68 16 12 C 0.03 0.45 4.65 -3.82 -0.02 0.43 16 13 N -0.53 -11.59 4.59 -244.37 -1.12 -12.71 16 14 C 0.04 0.81 9.31 60.07 0.56 1.37 16 15 C 0.19 5.09 4.55 -4.98 -0.02 5.07 16 16 C -0.50 -14.48 8.58 -34.44 -0.30 -14.77 16 17 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 20 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 O -0.18 -2.30 10.65 5.67 0.06 -2.24 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.35 4.84 8.72 -39.29 -0.34 4.50 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.36 4.85 9.05 45.56 0.41 5.26 16 36 H 0.06 0.89 7.75 -51.93 -0.40 0.48 16 37 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 38 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 39 H 0.04 0.70 7.85 -51.93 -0.41 0.29 16 40 H 0.07 1.52 7.01 -51.93 -0.36 1.15 16 41 H 0.03 0.84 6.60 -51.93 -0.34 0.50 16 42 H -0.01 -0.33 8.07 -51.92 -0.42 -0.75 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -33.28 358.77 -8.49 -41.78 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.36 Total: 5.20 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.00 Total: -9.10 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -1.12 Total: -48.47 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.40 Total: -11.93 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.28 -8.49 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601968740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.066 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds